Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS08705

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS08700 and LRK53_RS08705 are separated by 32 nucleotidesLRK53_RS08705 and LRK53_RS08710 are separated by 366 nucleotides LRK53_RS08700: LRK53_RS08700 - IS110 family transposase, at 1,955,023 to 1,956,045 _RS08700 LRK53_RS08705: LRK53_RS08705 - ferritin-like domain-containing protein, at 1,956,078 to 1,956,929 _RS08705 LRK53_RS08710: LRK53_RS08710 - hypothetical protein, at 1,957,296 to 1,958,159 _RS08710 Position (kb) 1956 1957Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1956.061 kb on + strandat 1956.061 kb on + strandat 1956.061 kb on + strandat 1956.061 kb on + strandat 1956.065 kb on + strandat 1956.065 kb on + strandat 1956.372 kb on + strand, within LRK53_RS08705at 1956.372 kb on + strand, within LRK53_RS08705at 1956.373 kb on - strand, within LRK53_RS08705at 1956.373 kb on - strand, within LRK53_RS08705at 1956.373 kb on - strand, within LRK53_RS08705at 1956.373 kb on - strand, within LRK53_RS08705at 1956.399 kb on + strand, within LRK53_RS08705at 1956.399 kb on + strand, within LRK53_RS08705at 1956.399 kb on + strand, within LRK53_RS08705at 1956.399 kb on + strand, within LRK53_RS08705at 1956.400 kb on - strand, within LRK53_RS08705at 1956.400 kb on - strand, within LRK53_RS08705at 1956.400 kb on - strand, within LRK53_RS08705at 1956.400 kb on - strand, within LRK53_RS08705at 1956.400 kb on - strand, within LRK53_RS08705at 1956.400 kb on - strand, within LRK53_RS08705at 1956.400 kb on - strand, within LRK53_RS08705at 1956.400 kb on - strand, within LRK53_RS08705at 1956.400 kb on - strand, within LRK53_RS08705at 1956.402 kb on + strand, within LRK53_RS08705at 1956.402 kb on + strand, within LRK53_RS08705at 1956.446 kb on + strand, within LRK53_RS08705at 1956.446 kb on + strand, within LRK53_RS08705at 1956.446 kb on + strand, within LRK53_RS08705at 1956.447 kb on - strand, within LRK53_RS08705at 1956.780 kb on + strand, within LRK53_RS08705at 1956.780 kb on + strand, within LRK53_RS08705at 1956.780 kb on + strand, within LRK53_RS08705at 1956.780 kb on + strand, within LRK53_RS08705at 1956.780 kb on + strand, within LRK53_RS08705at 1956.780 kb on + strand, within LRK53_RS08705at 1956.781 kb on - strand, within LRK53_RS08705at 1956.781 kb on - strand, within LRK53_RS08705at 1956.781 kb on - strand, within LRK53_RS08705at 1956.781 kb on - strand, within LRK53_RS08705at 1956.781 kb on - strand, within LRK53_RS08705at 1956.781 kb on - strand, within LRK53_RS08705at 1956.781 kb on - strand, within LRK53_RS08705at 1956.781 kb on - strand, within LRK53_RS08705at 1956.781 kb on - strand, within LRK53_RS08705at 1956.939 kb on + strandat 1956.939 kb on + strandat 1956.939 kb on + strandat 1956.939 kb on + strandat 1956.939 kb on + strandat 1956.939 kb on + strandat 1956.939 kb on + strandat 1956.940 kb on - strandat 1956.940 kb on - strandat 1956.940 kb on - strandat 1957.042 kb on + strandat 1957.042 kb on + strandat 1957.042 kb on + strandat 1957.042 kb on + strandat 1957.042 kb on + strandat 1957.043 kb on - strandat 1957.043 kb on - strandat 1957.043 kb on - strandat 1957.043 kb on - strandat 1957.043 kb on - strandat 1957.043 kb on - strandat 1957.043 kb on - strandat 1957.043 kb on - strandat 1957.050 kb on + strandat 1957.197 kb on + strandat 1957.197 kb on + strandat 1957.213 kb on + strandat 1957.213 kb on + strandat 1957.298 kb on - strandat 1957.351 kb on + strandat 1957.352 kb on - strandat 1957.352 kb on - strandat 1957.352 kb on - strandat 1957.352 kb on - strandat 1957.454 kb on + strand, within LRK53_RS08710at 1957.454 kb on + strand, within LRK53_RS08710at 1957.757 kb on + strand, within LRK53_RS08710at 1957.758 kb on - strand, within LRK53_RS08710at 1957.857 kb on - strand, within LRK53_RS08710

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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1,956,061 + +0.3
1,956,061 + -0.3
1,956,061 + +0.2
1,956,061 + -1.6
1,956,065 + +1.1
1,956,065 + -0.1
1,956,372 + LRK53_RS08705 0.35 -2.1
1,956,372 + LRK53_RS08705 0.35 -0.0
1,956,373 - LRK53_RS08705 0.35 -0.0
1,956,373 - LRK53_RS08705 0.35 -1.7
1,956,373 - LRK53_RS08705 0.35 +0.1
1,956,373 - LRK53_RS08705 0.35 -1.0
1,956,399 + LRK53_RS08705 0.38 +0.7
1,956,399 + LRK53_RS08705 0.38 -0.8
1,956,399 + LRK53_RS08705 0.38 +0.9
1,956,399 + LRK53_RS08705 0.38 +0.3
1,956,400 - LRK53_RS08705 0.38 +0.9
1,956,400 - LRK53_RS08705 0.38 -0.8
1,956,400 - LRK53_RS08705 0.38 +0.7
1,956,400 - LRK53_RS08705 0.38 -0.4
1,956,400 - LRK53_RS08705 0.38 +0.9
1,956,400 - LRK53_RS08705 0.38 +0.8
1,956,400 - LRK53_RS08705 0.38 +1.7
1,956,400 - LRK53_RS08705 0.38 +0.2
1,956,400 - LRK53_RS08705 0.38 -1.4
1,956,402 + LRK53_RS08705 0.38 +0.4
1,956,402 + LRK53_RS08705 0.38 +0.6
1,956,446 + LRK53_RS08705 0.43 +0.1
1,956,446 + LRK53_RS08705 0.43 -0.4
1,956,446 + LRK53_RS08705 0.43 -0.6
1,956,447 - LRK53_RS08705 0.43 -0.4
1,956,780 + LRK53_RS08705 0.82 -0.1
1,956,780 + LRK53_RS08705 0.82 +3.0
1,956,780 + LRK53_RS08705 0.82 -1.2
1,956,780 + LRK53_RS08705 0.82 -1.6
1,956,780 + LRK53_RS08705 0.82 +1.4
1,956,780 + LRK53_RS08705 0.82 +1.5
1,956,781 - LRK53_RS08705 0.83 -0.9
1,956,781 - LRK53_RS08705 0.83 -1.4
1,956,781 - LRK53_RS08705 0.83 +0.4
1,956,781 - LRK53_RS08705 0.83 +0.1
1,956,781 - LRK53_RS08705 0.83 +3.6
1,956,781 - LRK53_RS08705 0.83 -3.6
1,956,781 - LRK53_RS08705 0.83 +0.6
1,956,781 - LRK53_RS08705 0.83 -0.4
1,956,781 - LRK53_RS08705 0.83 -0.1
1,956,939 + -0.9
1,956,939 + +1.1
1,956,939 + +1.1
1,956,939 + +0.1
1,956,939 + -0.0
1,956,939 + +3.0
1,956,939 + -0.3
1,956,940 - +0.9
1,956,940 - -0.5
1,956,940 - +0.6
1,957,042 + -0.6
1,957,042 + +0.8
1,957,042 + -1.3
1,957,042 + -1.1
1,957,042 + -0.3
1,957,043 - -1.3
1,957,043 - -0.5
1,957,043 - -0.6
1,957,043 - -1.0
1,957,043 - -1.1
1,957,043 - -1.8
1,957,043 - -1.3
1,957,043 - -0.9
1,957,050 + +0.3
1,957,197 + +0.8
1,957,197 + -2.5
1,957,213 + -0.3
1,957,213 + +0.1
1,957,298 - +0.4
1,957,351 + -3.5
1,957,352 - -2.1
1,957,352 - -0.6
1,957,352 - -1.0
1,957,352 - -0.4
1,957,454 + LRK53_RS08710 0.18 +0.1
1,957,454 + LRK53_RS08710 0.18 -1.1
1,957,757 + LRK53_RS08710 0.53 +0.8
1,957,758 - LRK53_RS08710 0.53 -0.4
1,957,857 - LRK53_RS08710 0.65 -0.2

Or see this region's nucleotide sequence