Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS08700 and LRK53_RS08705 are separated by 32 nucleotides LRK53_RS08705 and LRK53_RS08710 are separated by 366 nucleotides
LRK53_RS08700: LRK53_RS08700 - IS110 family transposase, at 1,955,023 to 1,956,045
_RS08700
LRK53_RS08705: LRK53_RS08705 - ferritin-like domain-containing protein, at 1,956,078 to 1,956,929
_RS08705
LRK53_RS08710: LRK53_RS08710 - hypothetical protein, at 1,957,296 to 1,958,159
_RS08710
Position (kb)
1956
1957 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1956.061 kb on + strand at 1956.061 kb on + strand at 1956.061 kb on + strand at 1956.061 kb on + strand at 1956.065 kb on + strand at 1956.065 kb on + strand at 1956.372 kb on + strand, within LRK53_RS08705 at 1956.372 kb on + strand, within LRK53_RS08705 at 1956.373 kb on - strand, within LRK53_RS08705 at 1956.373 kb on - strand, within LRK53_RS08705 at 1956.373 kb on - strand, within LRK53_RS08705 at 1956.373 kb on - strand, within LRK53_RS08705 at 1956.399 kb on + strand, within LRK53_RS08705 at 1956.399 kb on + strand, within LRK53_RS08705 at 1956.399 kb on + strand, within LRK53_RS08705 at 1956.399 kb on + strand, within LRK53_RS08705 at 1956.400 kb on - strand, within LRK53_RS08705 at 1956.400 kb on - strand, within LRK53_RS08705 at 1956.400 kb on - strand, within LRK53_RS08705 at 1956.400 kb on - strand, within LRK53_RS08705 at 1956.400 kb on - strand, within LRK53_RS08705 at 1956.400 kb on - strand, within LRK53_RS08705 at 1956.400 kb on - strand, within LRK53_RS08705 at 1956.400 kb on - strand, within LRK53_RS08705 at 1956.400 kb on - strand, within LRK53_RS08705 at 1956.402 kb on + strand, within LRK53_RS08705 at 1956.402 kb on + strand, within LRK53_RS08705 at 1956.446 kb on + strand, within LRK53_RS08705 at 1956.446 kb on + strand, within LRK53_RS08705 at 1956.446 kb on + strand, within LRK53_RS08705 at 1956.447 kb on - strand, within LRK53_RS08705 at 1956.780 kb on + strand, within LRK53_RS08705 at 1956.780 kb on + strand, within LRK53_RS08705 at 1956.780 kb on + strand, within LRK53_RS08705 at 1956.780 kb on + strand, within LRK53_RS08705 at 1956.780 kb on + strand, within LRK53_RS08705 at 1956.780 kb on + strand, within LRK53_RS08705 at 1956.781 kb on - strand, within LRK53_RS08705 at 1956.781 kb on - strand, within LRK53_RS08705 at 1956.781 kb on - strand, within LRK53_RS08705 at 1956.781 kb on - strand, within LRK53_RS08705 at 1956.781 kb on - strand, within LRK53_RS08705 at 1956.781 kb on - strand, within LRK53_RS08705 at 1956.781 kb on - strand, within LRK53_RS08705 at 1956.781 kb on - strand, within LRK53_RS08705 at 1956.781 kb on - strand, within LRK53_RS08705 at 1956.939 kb on + strand at 1956.939 kb on + strand at 1956.939 kb on + strand at 1956.939 kb on + strand at 1956.939 kb on + strand at 1956.939 kb on + strand at 1956.939 kb on + strand at 1956.940 kb on - strand at 1956.940 kb on - strand at 1956.940 kb on - strand at 1957.042 kb on + strand at 1957.042 kb on + strand at 1957.042 kb on + strand at 1957.042 kb on + strand at 1957.042 kb on + strand at 1957.043 kb on - strand at 1957.043 kb on - strand at 1957.043 kb on - strand at 1957.043 kb on - strand at 1957.043 kb on - strand at 1957.043 kb on - strand at 1957.043 kb on - strand at 1957.043 kb on - strand at 1957.050 kb on + strand at 1957.197 kb on + strand at 1957.197 kb on + strand at 1957.213 kb on + strand at 1957.213 kb on + strand at 1957.298 kb on - strand at 1957.351 kb on + strand at 1957.352 kb on - strand at 1957.352 kb on - strand at 1957.352 kb on - strand at 1957.352 kb on - strand at 1957.454 kb on + strand, within LRK53_RS08710 at 1957.454 kb on + strand, within LRK53_RS08710 at 1957.757 kb on + strand, within LRK53_RS08710 at 1957.758 kb on - strand, within LRK53_RS08710 at 1957.857 kb on - strand, within LRK53_RS08710
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 1,956,061 + +0.3 1,956,061 + -0.3 1,956,061 + +0.2 1,956,061 + -1.6 1,956,065 + +1.1 1,956,065 + -0.1 1,956,372 + LRK53_RS08705 0.35 -2.1 1,956,372 + LRK53_RS08705 0.35 -0.0 1,956,373 - LRK53_RS08705 0.35 -0.0 1,956,373 - LRK53_RS08705 0.35 -1.7 1,956,373 - LRK53_RS08705 0.35 +0.1 1,956,373 - LRK53_RS08705 0.35 -1.0 1,956,399 + LRK53_RS08705 0.38 +0.7 1,956,399 + LRK53_RS08705 0.38 -0.8 1,956,399 + LRK53_RS08705 0.38 +0.9 1,956,399 + LRK53_RS08705 0.38 +0.3 1,956,400 - LRK53_RS08705 0.38 +0.9 1,956,400 - LRK53_RS08705 0.38 -0.8 1,956,400 - LRK53_RS08705 0.38 +0.7 1,956,400 - LRK53_RS08705 0.38 -0.4 1,956,400 - LRK53_RS08705 0.38 +0.9 1,956,400 - LRK53_RS08705 0.38 +0.8 1,956,400 - LRK53_RS08705 0.38 +1.7 1,956,400 - LRK53_RS08705 0.38 +0.2 1,956,400 - LRK53_RS08705 0.38 -1.4 1,956,402 + LRK53_RS08705 0.38 +0.4 1,956,402 + LRK53_RS08705 0.38 +0.6 1,956,446 + LRK53_RS08705 0.43 +0.1 1,956,446 + LRK53_RS08705 0.43 -0.4 1,956,446 + LRK53_RS08705 0.43 -0.6 1,956,447 - LRK53_RS08705 0.43 -0.4 1,956,780 + LRK53_RS08705 0.82 -0.1 1,956,780 + LRK53_RS08705 0.82 +3.0 1,956,780 + LRK53_RS08705 0.82 -1.2 1,956,780 + LRK53_RS08705 0.82 -1.6 1,956,780 + LRK53_RS08705 0.82 +1.4 1,956,780 + LRK53_RS08705 0.82 +1.5 1,956,781 - LRK53_RS08705 0.83 -0.9 1,956,781 - LRK53_RS08705 0.83 -1.4 1,956,781 - LRK53_RS08705 0.83 +0.4 1,956,781 - LRK53_RS08705 0.83 +0.1 1,956,781 - LRK53_RS08705 0.83 +3.6 1,956,781 - LRK53_RS08705 0.83 -3.6 1,956,781 - LRK53_RS08705 0.83 +0.6 1,956,781 - LRK53_RS08705 0.83 -0.4 1,956,781 - LRK53_RS08705 0.83 -0.1 1,956,939 + -0.9 1,956,939 + +1.1 1,956,939 + +1.1 1,956,939 + +0.1 1,956,939 + -0.0 1,956,939 + +3.0 1,956,939 + -0.3 1,956,940 - +0.9 1,956,940 - -0.5 1,956,940 - +0.6 1,957,042 + -0.6 1,957,042 + +0.8 1,957,042 + -1.3 1,957,042 + -1.1 1,957,042 + -0.3 1,957,043 - -1.3 1,957,043 - -0.5 1,957,043 - -0.6 1,957,043 - -1.0 1,957,043 - -1.1 1,957,043 - -1.8 1,957,043 - -1.3 1,957,043 - -0.9 1,957,050 + +0.3 1,957,197 + +0.8 1,957,197 + -2.5 1,957,213 + -0.3 1,957,213 + +0.1 1,957,298 - +0.4 1,957,351 + -3.5 1,957,352 - -2.1 1,957,352 - -0.6 1,957,352 - -1.0 1,957,352 - -0.4 1,957,454 + LRK53_RS08710 0.18 +0.1 1,957,454 + LRK53_RS08710 0.18 -1.1 1,957,757 + LRK53_RS08710 0.53 +0.8 1,957,758 - LRK53_RS08710 0.53 -0.4 1,957,857 - LRK53_RS08710 0.65 -0.2
Or see this region's nucleotide sequence