Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS08685 and LRK53_RS08690 are separated by 39 nucleotides LRK53_RS08690 and LRK53_RS08695 are separated by 27 nucleotides LRK53_RS08695 and LRK53_RS08700 are separated by 351 nucleotides
LRK53_RS08685: LRK53_RS08685 - SPOR domain-containing protein, at 1,951,474 to 1,952,499
_RS08685
LRK53_RS08690: LRK53_RS08690 - CvpA family protein, at 1,952,539 to 1,953,168
_RS08690
LRK53_RS08695: LRK53_RS08695 - amidophosphoribosyltransferase, at 1,953,196 to 1,954,671
_RS08695
LRK53_RS08700: LRK53_RS08700 - IS110 family transposase, at 1,955,023 to 1,956,045
_RS08700
Position (kb)
1953
1954
1955 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1952.597 kb on + strand at 1952.597 kb on + strand at 1952.597 kb on + strand at 1952.598 kb on - strand at 1952.598 kb on - strand at 1952.598 kb on - strand at 1952.598 kb on - strand at 1952.737 kb on + strand, within LRK53_RS08690 at 1952.765 kb on + strand, within LRK53_RS08690 at 1952.765 kb on + strand, within LRK53_RS08690 at 1952.765 kb on + strand, within LRK53_RS08690 at 1952.765 kb on + strand, within LRK53_RS08690 at 1952.766 kb on - strand, within LRK53_RS08690 at 1953.013 kb on + strand, within LRK53_RS08690 at 1953.014 kb on + strand, within LRK53_RS08690 at 1953.014 kb on - strand, within LRK53_RS08690 at 1953.014 kb on - strand, within LRK53_RS08690 at 1953.014 kb on - strand, within LRK53_RS08690 at 1953.014 kb on - strand, within LRK53_RS08690 at 1953.014 kb on - strand, within LRK53_RS08690 at 1953.014 kb on - strand, within LRK53_RS08690 at 1953.014 kb on - strand, within LRK53_RS08690 at 1953.247 kb on + strand at 1953.247 kb on + strand at 1953.247 kb on + strand at 1953.247 kb on + strand at 1953.247 kb on + strand at 1953.247 kb on + strand at 1953.248 kb on - strand at 1953.248 kb on - strand at 1953.460 kb on + strand, within LRK53_RS08695 at 1953.460 kb on + strand, within LRK53_RS08695 at 1953.460 kb on + strand, within LRK53_RS08695 at 1953.460 kb on + strand, within LRK53_RS08695 at 1953.461 kb on - strand, within LRK53_RS08695 at 1953.461 kb on - strand, within LRK53_RS08695 at 1953.461 kb on - strand, within LRK53_RS08695 at 1953.695 kb on - strand, within LRK53_RS08695 at 1953.695 kb on - strand, within LRK53_RS08695 at 1953.722 kb on - strand, within LRK53_RS08695 at 1953.802 kb on + strand, within LRK53_RS08695 at 1953.907 kb on + strand, within LRK53_RS08695 at 1953.907 kb on + strand, within LRK53_RS08695 at 1953.907 kb on + strand, within LRK53_RS08695 at 1953.907 kb on + strand, within LRK53_RS08695 at 1953.907 kb on + strand, within LRK53_RS08695 at 1953.907 kb on + strand, within LRK53_RS08695 at 1953.907 kb on + strand, within LRK53_RS08695 at 1953.907 kb on + strand, within LRK53_RS08695 at 1953.907 kb on + strand, within LRK53_RS08695 at 1953.907 kb on + strand, within LRK53_RS08695 at 1953.907 kb on + strand, within LRK53_RS08695 at 1953.908 kb on - strand, within LRK53_RS08695 at 1953.908 kb on - strand, within LRK53_RS08695 at 1953.908 kb on - strand, within LRK53_RS08695 at 1953.908 kb on - strand, within LRK53_RS08695 at 1953.908 kb on - strand, within LRK53_RS08695 at 1953.958 kb on + strand, within LRK53_RS08695 at 1953.958 kb on + strand, within LRK53_RS08695 at 1953.958 kb on + strand, within LRK53_RS08695 at 1953.958 kb on + strand, within LRK53_RS08695 at 1953.958 kb on + strand, within LRK53_RS08695 at 1953.958 kb on + strand, within LRK53_RS08695 at 1953.958 kb on + strand, within LRK53_RS08695 at 1953.958 kb on + strand, within LRK53_RS08695 at 1953.959 kb on - strand, within LRK53_RS08695 at 1953.959 kb on - strand, within LRK53_RS08695 at 1953.959 kb on - strand, within LRK53_RS08695 at 1953.959 kb on - strand, within LRK53_RS08695 at 1953.959 kb on - strand, within LRK53_RS08695 at 1953.959 kb on - strand, within LRK53_RS08695 at 1953.959 kb on - strand, within LRK53_RS08695 at 1953.959 kb on - strand, within LRK53_RS08695 at 1953.959 kb on - strand, within LRK53_RS08695 at 1953.959 kb on - strand, within LRK53_RS08695 at 1953.959 kb on - strand, within LRK53_RS08695 at 1953.964 kb on + strand, within LRK53_RS08695 at 1953.964 kb on + strand, within LRK53_RS08695 at 1953.964 kb on + strand, within LRK53_RS08695 at 1953.964 kb on + strand, within LRK53_RS08695 at 1953.964 kb on + strand, within LRK53_RS08695 at 1953.964 kb on + strand, within LRK53_RS08695 at 1953.964 kb on + strand, within LRK53_RS08695 at 1953.964 kb on + strand, within LRK53_RS08695 at 1953.964 kb on + strand, within LRK53_RS08695 at 1953.964 kb on + strand, within LRK53_RS08695 at 1953.964 kb on + strand, within LRK53_RS08695 at 1953.964 kb on + strand, within LRK53_RS08695 at 1953.965 kb on - strand, within LRK53_RS08695 at 1953.965 kb on - strand, within LRK53_RS08695 at 1953.965 kb on - strand, within LRK53_RS08695 at 1953.965 kb on - strand, within LRK53_RS08695 at 1953.965 kb on - strand, within LRK53_RS08695 at 1954.006 kb on + strand, within LRK53_RS08695 at 1954.006 kb on + strand, within LRK53_RS08695 at 1954.006 kb on + strand, within LRK53_RS08695 at 1954.006 kb on + strand, within LRK53_RS08695 at 1954.006 kb on + strand, within LRK53_RS08695 at 1954.007 kb on - strand, within LRK53_RS08695 at 1954.007 kb on - strand, within LRK53_RS08695 at 1954.177 kb on + strand, within LRK53_RS08695 at 1954.177 kb on + strand, within LRK53_RS08695 at 1954.178 kb on - strand, within LRK53_RS08695 at 1954.178 kb on - strand, within LRK53_RS08695 at 1954.363 kb on + strand, within LRK53_RS08695 at 1954.363 kb on + strand, within LRK53_RS08695 at 1954.363 kb on + strand, within LRK53_RS08695 at 1954.363 kb on + strand, within LRK53_RS08695 at 1954.364 kb on - strand, within LRK53_RS08695 at 1954.364 kb on - strand, within LRK53_RS08695 at 1954.364 kb on - strand, within LRK53_RS08695 at 1954.394 kb on - strand, within LRK53_RS08695 at 1954.405 kb on + strand, within LRK53_RS08695 at 1954.406 kb on - strand, within LRK53_RS08695 at 1954.406 kb on - strand, within LRK53_RS08695 at 1954.406 kb on - strand, within LRK53_RS08695 at 1954.406 kb on - strand, within LRK53_RS08695 at 1954.498 kb on + strand, within LRK53_RS08695 at 1954.498 kb on + strand, within LRK53_RS08695 at 1954.498 kb on + strand, within LRK53_RS08695 at 1954.498 kb on + strand, within LRK53_RS08695 at 1954.498 kb on + strand, within LRK53_RS08695 at 1954.498 kb on + strand, within LRK53_RS08695 at 1954.498 kb on + strand, within LRK53_RS08695 at 1954.498 kb on + strand, within LRK53_RS08695 at 1954.498 kb on + strand, within LRK53_RS08695 at 1954.498 kb on + strand, within LRK53_RS08695 at 1954.498 kb on + strand, within LRK53_RS08695 at 1954.499 kb on - strand, within LRK53_RS08695 at 1954.499 kb on - strand, within LRK53_RS08695 at 1954.499 kb on - strand, within LRK53_RS08695 at 1954.499 kb on - strand, within LRK53_RS08695 at 1954.499 kb on - strand, within LRK53_RS08695 at 1954.585 kb on + strand at 1954.585 kb on + strand at 1954.585 kb on + strand at 1954.586 kb on - strand at 1954.586 kb on - strand at 1954.586 kb on - strand at 1954.586 kb on - strand at 1954.609 kb on + strand at 1954.609 kb on + strand at 1954.609 kb on + strand at 1954.609 kb on + strand at 1954.609 kb on + strand at 1954.609 kb on + strand at 1954.610 kb on - strand at 1954.610 kb on - strand at 1954.610 kb on - strand at 1954.610 kb on - strand at 1954.610 kb on - strand at 1954.610 kb on - strand at 1954.610 kb on - strand at 1954.610 kb on - strand at 1954.610 kb on - strand at 1954.679 kb on - strand at 1954.679 kb on - strand at 1954.690 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 1,952,597 + +0.1 1,952,597 + -0.1 1,952,597 + -2.4 1,952,598 - -0.3 1,952,598 - -1.9 1,952,598 - +2.4 1,952,598 - -0.7 1,952,737 + LRK53_RS08690 0.31 +0.9 1,952,765 + LRK53_RS08690 0.36 -0.1 1,952,765 + LRK53_RS08690 0.36 -0.6 1,952,765 + LRK53_RS08690 0.36 -2.6 1,952,765 + LRK53_RS08690 0.36 +0.3 1,952,766 - LRK53_RS08690 0.36 -0.4 1,953,013 + LRK53_RS08690 0.75 +1.0 1,953,014 + LRK53_RS08690 0.75 -1.9 1,953,014 - LRK53_RS08690 0.75 +1.7 1,953,014 - LRK53_RS08690 0.75 -1.5 1,953,014 - LRK53_RS08690 0.75 +0.1 1,953,014 - LRK53_RS08690 0.75 -1.0 1,953,014 - LRK53_RS08690 0.75 -1.5 1,953,014 - LRK53_RS08690 0.75 +0.3 1,953,014 - LRK53_RS08690 0.75 +0.9 1,953,247 + +0.9 1,953,247 + -0.4 1,953,247 + +1.1 1,953,247 + +0.3 1,953,247 + +0.1 1,953,247 + -1.0 1,953,248 - -0.4 1,953,248 - -1.3 1,953,460 + LRK53_RS08695 0.18 +0.7 1,953,460 + LRK53_RS08695 0.18 +1.9 1,953,460 + LRK53_RS08695 0.18 +1.6 1,953,460 + LRK53_RS08695 0.18 +0.5 1,953,461 - LRK53_RS08695 0.18 +0.1 1,953,461 - LRK53_RS08695 0.18 -1.5 1,953,461 - LRK53_RS08695 0.18 +0.5 1,953,695 - LRK53_RS08695 0.34 +0.7 1,953,695 - LRK53_RS08695 0.34 +1.4 1,953,722 - LRK53_RS08695 0.36 -0.4 1,953,802 + LRK53_RS08695 0.41 -0.6 1,953,907 + LRK53_RS08695 0.48 +0.4 1,953,907 + LRK53_RS08695 0.48 +0.9 1,953,907 + LRK53_RS08695 0.48 +0.9 1,953,907 + LRK53_RS08695 0.48 -1.6 1,953,907 + LRK53_RS08695 0.48 -0.0 1,953,907 + LRK53_RS08695 0.48 +0.8 1,953,907 + LRK53_RS08695 0.48 +1.0 1,953,907 + LRK53_RS08695 0.48 -0.2 1,953,907 + LRK53_RS08695 0.48 +0.8 1,953,907 + LRK53_RS08695 0.48 +1.3 1,953,907 + LRK53_RS08695 0.48 +1.5 1,953,908 - LRK53_RS08695 0.48 +1.4 1,953,908 - LRK53_RS08695 0.48 +0.6 1,953,908 - LRK53_RS08695 0.48 -1.7 1,953,908 - LRK53_RS08695 0.48 -1.5 1,953,908 - LRK53_RS08695 0.48 +0.4 1,953,958 + LRK53_RS08695 0.52 -0.5 1,953,958 + LRK53_RS08695 0.52 -0.6 1,953,958 + LRK53_RS08695 0.52 -0.1 1,953,958 + LRK53_RS08695 0.52 +0.4 1,953,958 + LRK53_RS08695 0.52 -0.7 1,953,958 + LRK53_RS08695 0.52 -2.3 1,953,958 + LRK53_RS08695 0.52 +1.8 1,953,958 + LRK53_RS08695 0.52 +0.9 1,953,959 - LRK53_RS08695 0.52 -0.7 1,953,959 - LRK53_RS08695 0.52 +1.0 1,953,959 - LRK53_RS08695 0.52 +1.1 1,953,959 - LRK53_RS08695 0.52 +0.4 1,953,959 - LRK53_RS08695 0.52 +0.9 1,953,959 - LRK53_RS08695 0.52 -2.5 1,953,959 - LRK53_RS08695 0.52 +0.8 1,953,959 - LRK53_RS08695 0.52 +0.3 1,953,959 - LRK53_RS08695 0.52 +2.4 1,953,959 - LRK53_RS08695 0.52 +0.4 1,953,959 - LRK53_RS08695 0.52 +1.4 1,953,964 + LRK53_RS08695 0.52 -0.1 1,953,964 + LRK53_RS08695 0.52 +2.0 1,953,964 + LRK53_RS08695 0.52 -0.0 1,953,964 + LRK53_RS08695 0.52 +1.9 1,953,964 + LRK53_RS08695 0.52 +1.2 1,953,964 + LRK53_RS08695 0.52 +0.1 1,953,964 + LRK53_RS08695 0.52 -0.1 1,953,964 + LRK53_RS08695 0.52 -2.7 1,953,964 + LRK53_RS08695 0.52 -0.2 1,953,964 + LRK53_RS08695 0.52 +0.1 1,953,964 + LRK53_RS08695 0.52 +1.0 1,953,964 + LRK53_RS08695 0.52 +0.7 1,953,965 - LRK53_RS08695 0.52 +1.4 1,953,965 - LRK53_RS08695 0.52 +2.4 1,953,965 - LRK53_RS08695 0.52 +2.1 1,953,965 - LRK53_RS08695 0.52 -1.3 1,953,965 - LRK53_RS08695 0.52 +0.7 1,954,006 + LRK53_RS08695 0.55 -0.2 1,954,006 + LRK53_RS08695 0.55 +0.5 1,954,006 + LRK53_RS08695 0.55 +2.0 1,954,006 + LRK53_RS08695 0.55 +1.0 1,954,006 + LRK53_RS08695 0.55 +0.3 1,954,007 - LRK53_RS08695 0.55 -1.3 1,954,007 - LRK53_RS08695 0.55 +0.9 1,954,177 + LRK53_RS08695 0.66 +0.9 1,954,177 + LRK53_RS08695 0.66 +1.3 1,954,178 - LRK53_RS08695 0.67 +1.2 1,954,178 - LRK53_RS08695 0.67 -1.1 1,954,363 + LRK53_RS08695 0.79 +0.1 1,954,363 + LRK53_RS08695 0.79 -0.3 1,954,363 + LRK53_RS08695 0.79 +1.4 1,954,363 + LRK53_RS08695 0.79 +0.9 1,954,364 - LRK53_RS08695 0.79 -1.8 1,954,364 - LRK53_RS08695 0.79 -1.6 1,954,364 - LRK53_RS08695 0.79 +0.1 1,954,394 - LRK53_RS08695 0.81 +0.7 1,954,405 + LRK53_RS08695 0.82 -0.0 1,954,406 - LRK53_RS08695 0.82 +2.1 1,954,406 - LRK53_RS08695 0.82 +1.3 1,954,406 - LRK53_RS08695 0.82 +0.6 1,954,406 - LRK53_RS08695 0.82 -0.3 1,954,498 + LRK53_RS08695 0.88 +0.0 1,954,498 + LRK53_RS08695 0.88 -0.9 1,954,498 + LRK53_RS08695 0.88 +0.4 1,954,498 + LRK53_RS08695 0.88 -0.6 1,954,498 + LRK53_RS08695 0.88 -0.7 1,954,498 + LRK53_RS08695 0.88 +0.9 1,954,498 + LRK53_RS08695 0.88 +1.1 1,954,498 + LRK53_RS08695 0.88 +0.1 1,954,498 + LRK53_RS08695 0.88 +0.4 1,954,498 + LRK53_RS08695 0.88 +2.3 1,954,498 + LRK53_RS08695 0.88 -1.1 1,954,499 - LRK53_RS08695 0.88 -0.6 1,954,499 - LRK53_RS08695 0.88 +1.8 1,954,499 - LRK53_RS08695 0.88 -0.6 1,954,499 - LRK53_RS08695 0.88 -0.1 1,954,499 - LRK53_RS08695 0.88 -0.6 1,954,585 + -1.6 1,954,585 + +1.6 1,954,585 + +0.1 1,954,586 - -0.6 1,954,586 - -0.4 1,954,586 - +0.1 1,954,586 - -0.2 1,954,609 + -0.7 1,954,609 + -2.4 1,954,609 + -0.6 1,954,609 + -0.7 1,954,609 + +1.9 1,954,609 + +0.6 1,954,610 - -0.5 1,954,610 - -0.0 1,954,610 - +0.0 1,954,610 - +1.8 1,954,610 - -0.3 1,954,610 - -0.1 1,954,610 - -0.5 1,954,610 - -0.5 1,954,610 - -1.2 1,954,679 - +0.7 1,954,679 - -0.8 1,954,690 - +1.7
Or see this region's nucleotide sequence