Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS08690

Experiment: Biofilm; Day2; SGW; pH7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS08685 and LRK53_RS08690 are separated by 39 nucleotidesLRK53_RS08690 and LRK53_RS08695 are separated by 27 nucleotides LRK53_RS08685: LRK53_RS08685 - SPOR domain-containing protein, at 1,951,474 to 1,952,499 _RS08685 LRK53_RS08690: LRK53_RS08690 - CvpA family protein, at 1,952,539 to 1,953,168 _RS08690 LRK53_RS08695: LRK53_RS08695 - amidophosphoribosyltransferase, at 1,953,196 to 1,954,671 _RS08695 Position (kb) 1952 1953 1954Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1952.597 kb on + strandat 1952.597 kb on + strandat 1952.598 kb on - strandat 1952.598 kb on - strandat 1952.598 kb on - strandat 1952.598 kb on - strandat 1952.737 kb on + strand, within LRK53_RS08690at 1952.765 kb on + strand, within LRK53_RS08690at 1952.765 kb on + strand, within LRK53_RS08690at 1952.765 kb on + strand, within LRK53_RS08690at 1952.766 kb on - strand, within LRK53_RS08690at 1953.013 kb on + strand, within LRK53_RS08690at 1953.013 kb on + strand, within LRK53_RS08690at 1953.014 kb on + strand, within LRK53_RS08690at 1953.014 kb on - strand, within LRK53_RS08690at 1953.014 kb on - strand, within LRK53_RS08690at 1953.014 kb on - strand, within LRK53_RS08690at 1953.014 kb on - strand, within LRK53_RS08690at 1953.014 kb on - strand, within LRK53_RS08690at 1953.014 kb on - strand, within LRK53_RS08690at 1953.014 kb on - strand, within LRK53_RS08690at 1953.014 kb on - strand, within LRK53_RS08690at 1953.247 kb on + strandat 1953.247 kb on + strandat 1953.247 kb on + strandat 1953.247 kb on + strandat 1953.247 kb on + strandat 1953.247 kb on + strandat 1953.248 kb on - strandat 1953.248 kb on - strandat 1953.248 kb on - strandat 1953.460 kb on + strand, within LRK53_RS08695at 1953.460 kb on + strand, within LRK53_RS08695at 1953.460 kb on + strand, within LRK53_RS08695at 1953.460 kb on + strand, within LRK53_RS08695at 1953.461 kb on - strand, within LRK53_RS08695at 1953.461 kb on - strand, within LRK53_RS08695at 1953.461 kb on - strand, within LRK53_RS08695at 1953.695 kb on - strand, within LRK53_RS08695at 1953.695 kb on - strand, within LRK53_RS08695at 1953.722 kb on - strand, within LRK53_RS08695at 1953.802 kb on + strand, within LRK53_RS08695at 1953.907 kb on + strand, within LRK53_RS08695at 1953.907 kb on + strand, within LRK53_RS08695at 1953.907 kb on + strand, within LRK53_RS08695at 1953.907 kb on + strand, within LRK53_RS08695at 1953.907 kb on + strand, within LRK53_RS08695at 1953.907 kb on + strand, within LRK53_RS08695at 1953.907 kb on + strand, within LRK53_RS08695at 1953.907 kb on + strand, within LRK53_RS08695at 1953.907 kb on + strand, within LRK53_RS08695at 1953.907 kb on + strand, within LRK53_RS08695at 1953.908 kb on - strand, within LRK53_RS08695at 1953.908 kb on - strand, within LRK53_RS08695at 1953.908 kb on - strand, within LRK53_RS08695at 1953.908 kb on - strand, within LRK53_RS08695at 1953.908 kb on - strand, within LRK53_RS08695at 1953.908 kb on - strand, within LRK53_RS08695at 1953.908 kb on - strand, within LRK53_RS08695at 1953.958 kb on + strand, within LRK53_RS08695at 1953.958 kb on + strand, within LRK53_RS08695at 1953.958 kb on + strand, within LRK53_RS08695at 1953.958 kb on + strand, within LRK53_RS08695at 1953.958 kb on + strand, within LRK53_RS08695at 1953.958 kb on + strand, within LRK53_RS08695at 1953.958 kb on + strand, within LRK53_RS08695at 1953.958 kb on + strand, within LRK53_RS08695at 1953.958 kb on + strand, within LRK53_RS08695at 1953.959 kb on - strand, within LRK53_RS08695at 1953.959 kb on - strand, within LRK53_RS08695at 1953.959 kb on - strand, within LRK53_RS08695at 1953.959 kb on - strand, within LRK53_RS08695at 1953.959 kb on - strand, within LRK53_RS08695at 1953.959 kb on - strand, within LRK53_RS08695at 1953.959 kb on - strand, within LRK53_RS08695at 1953.959 kb on - strand, within LRK53_RS08695at 1953.959 kb on - strand, within LRK53_RS08695at 1953.959 kb on - strand, within LRK53_RS08695at 1953.959 kb on - strand, within LRK53_RS08695at 1953.964 kb on + strand, within LRK53_RS08695at 1953.964 kb on + strand, within LRK53_RS08695at 1953.964 kb on + strand, within LRK53_RS08695at 1953.964 kb on + strand, within LRK53_RS08695at 1953.964 kb on + strand, within LRK53_RS08695at 1953.964 kb on + strand, within LRK53_RS08695at 1953.964 kb on + strand, within LRK53_RS08695at 1953.964 kb on + strand, within LRK53_RS08695at 1953.964 kb on + strand, within LRK53_RS08695at 1953.964 kb on + strand, within LRK53_RS08695at 1953.964 kb on + strand, within LRK53_RS08695at 1953.964 kb on + strand, within LRK53_RS08695at 1953.965 kb on - strand, within LRK53_RS08695at 1953.965 kb on - strand, within LRK53_RS08695at 1953.965 kb on - strand, within LRK53_RS08695at 1953.965 kb on - strand, within LRK53_RS08695at 1953.965 kb on - strand, within LRK53_RS08695at 1954.006 kb on + strand, within LRK53_RS08695at 1954.006 kb on + strand, within LRK53_RS08695at 1954.006 kb on + strand, within LRK53_RS08695at 1954.006 kb on + strand, within LRK53_RS08695at 1954.007 kb on - strand, within LRK53_RS08695at 1954.007 kb on - strand, within LRK53_RS08695

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
remove
1,952,597 + -0.3
1,952,597 + -2.5
1,952,598 - -0.5
1,952,598 - -2.1
1,952,598 - +2.3
1,952,598 - -0.9
1,952,737 + LRK53_RS08690 0.31 +0.7
1,952,765 + LRK53_RS08690 0.36 -0.7
1,952,765 + LRK53_RS08690 0.36 -2.8
1,952,765 + LRK53_RS08690 0.36 +0.1
1,952,766 - LRK53_RS08690 0.36 -0.6
1,953,013 + LRK53_RS08690 0.75 +0.9
1,953,013 + LRK53_RS08690 0.75 +0.3
1,953,014 + LRK53_RS08690 0.75 -2.0
1,953,014 - LRK53_RS08690 0.75 +1.5
1,953,014 - LRK53_RS08690 0.75 -1.6
1,953,014 - LRK53_RS08690 0.75 -0.0
1,953,014 - LRK53_RS08690 0.75 -1.2
1,953,014 - LRK53_RS08690 0.75 -1.6
1,953,014 - LRK53_RS08690 0.75 +0.2
1,953,014 - LRK53_RS08690 0.75 +0.8
1,953,014 - LRK53_RS08690 0.75 -0.0
1,953,247 + +0.8
1,953,247 + -0.6
1,953,247 + +1.0
1,953,247 + +0.1
1,953,247 + -0.0
1,953,247 + -1.1
1,953,248 - -0.6
1,953,248 - -0.5
1,953,248 - -1.4
1,953,460 + LRK53_RS08695 0.18 +0.5
1,953,460 + LRK53_RS08695 0.18 +1.7
1,953,460 + LRK53_RS08695 0.18 +1.4
1,953,460 + LRK53_RS08695 0.18 +0.4
1,953,461 - LRK53_RS08695 0.18 -0.0
1,953,461 - LRK53_RS08695 0.18 -1.7
1,953,461 - LRK53_RS08695 0.18 +0.4
1,953,695 - LRK53_RS08695 0.34 +0.6
1,953,695 - LRK53_RS08695 0.34 +1.3
1,953,722 - LRK53_RS08695 0.36 -0.5
1,953,802 + LRK53_RS08695 0.41 -0.8
1,953,907 + LRK53_RS08695 0.48 +0.3
1,953,907 + LRK53_RS08695 0.48 +0.7
1,953,907 + LRK53_RS08695 0.48 -1.8
1,953,907 + LRK53_RS08695 0.48 -0.2
1,953,907 + LRK53_RS08695 0.48 +0.6
1,953,907 + LRK53_RS08695 0.48 +0.9
1,953,907 + LRK53_RS08695 0.48 -0.3
1,953,907 + LRK53_RS08695 0.48 +0.6
1,953,907 + LRK53_RS08695 0.48 +1.1
1,953,907 + LRK53_RS08695 0.48 +1.3
1,953,908 - LRK53_RS08695 0.48 +1.3
1,953,908 - LRK53_RS08695 0.48 +2.3
1,953,908 - LRK53_RS08695 0.48 +0.4
1,953,908 - LRK53_RS08695 0.48 -1.9
1,953,908 - LRK53_RS08695 0.48 +0.1
1,953,908 - LRK53_RS08695 0.48 -1.7
1,953,908 - LRK53_RS08695 0.48 +0.3
1,953,958 + LRK53_RS08695 0.52 -0.6
1,953,958 + LRK53_RS08695 0.52 -0.7
1,953,958 + LRK53_RS08695 0.52 -0.2
1,953,958 + LRK53_RS08695 0.52 +0.2
1,953,958 + LRK53_RS08695 0.52 +1.5
1,953,958 + LRK53_RS08695 0.52 -0.8
1,953,958 + LRK53_RS08695 0.52 -2.4
1,953,958 + LRK53_RS08695 0.52 +1.6
1,953,958 + LRK53_RS08695 0.52 +0.7
1,953,959 - LRK53_RS08695 0.52 -0.9
1,953,959 - LRK53_RS08695 0.52 +0.8
1,953,959 - LRK53_RS08695 0.52 +0.9
1,953,959 - LRK53_RS08695 0.52 +0.2
1,953,959 - LRK53_RS08695 0.52 +0.7
1,953,959 - LRK53_RS08695 0.52 -2.6
1,953,959 - LRK53_RS08695 0.52 +0.6
1,953,959 - LRK53_RS08695 0.52 +0.1
1,953,959 - LRK53_RS08695 0.52 +2.3
1,953,959 - LRK53_RS08695 0.52 +0.3
1,953,959 - LRK53_RS08695 0.52 +1.3
1,953,964 + LRK53_RS08695 0.52 -0.3
1,953,964 + LRK53_RS08695 0.52 +1.9
1,953,964 + LRK53_RS08695 0.52 -0.2
1,953,964 + LRK53_RS08695 0.52 +1.8
1,953,964 + LRK53_RS08695 0.52 +1.1
1,953,964 + LRK53_RS08695 0.52 -0.0
1,953,964 + LRK53_RS08695 0.52 -0.3
1,953,964 + LRK53_RS08695 0.52 -2.8
1,953,964 + LRK53_RS08695 0.52 -0.4
1,953,964 + LRK53_RS08695 0.52 -0.0
1,953,964 + LRK53_RS08695 0.52 +0.8
1,953,964 + LRK53_RS08695 0.52 +0.5
1,953,965 - LRK53_RS08695 0.52 +1.3
1,953,965 - LRK53_RS08695 0.52 +2.3
1,953,965 - LRK53_RS08695 0.52 +2.0
1,953,965 - LRK53_RS08695 0.52 -1.4
1,953,965 - LRK53_RS08695 0.52 +0.6
1,954,006 + LRK53_RS08695 0.55 +0.4
1,954,006 + LRK53_RS08695 0.55 +1.9
1,954,006 + LRK53_RS08695 0.55 +0.8
1,954,006 + LRK53_RS08695 0.55 +0.1
1,954,007 - LRK53_RS08695 0.55 -1.4
1,954,007 - LRK53_RS08695 0.55 +0.7

Or see this region's nucleotide sequence