Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS08575

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS08565 and LRK53_RS08570 overlap by 41 nucleotidesLRK53_RS08570 and LRK53_RS08575 are separated by 221 nucleotidesLRK53_RS08575 and LRK53_RS08580 are separated by 20 nucleotidesLRK53_RS08580 and LRK53_RS08585 overlap by 4 nucleotides LRK53_RS08565: LRK53_RS08565 - winged helix-turn-helix domain-containing protein, at 1,923,132 to 1,923,656 _RS08565 LRK53_RS08570: LRK53_RS08570 - IS630 family transposase, at 1,923,616 to 1,924,197 _RS08570 LRK53_RS08575: LRK53_RS08575 - RNA-binding S4 domain-containing protein, at 1,924,419 to 1,924,664 _RS08575 LRK53_RS08580: LRK53_RS08580 - barstar family protein, at 1,924,685 to 1,925,125 _RS08580 LRK53_RS08585: LRK53_RS08585 - ribonuclease, at 1,925,122 to 1,925,541 _RS08585 Position (kb) 1924 1925Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1924.176 kb on + strandat 1924.176 kb on + strandat 1924.176 kb on + strandat 1924.630 kb on + strand, within LRK53_RS08575at 1924.630 kb on + strand, within LRK53_RS08575at 1924.631 kb on - strand, within LRK53_RS08575at 1924.631 kb on - strand, within LRK53_RS08575at 1924.631 kb on - strand, within LRK53_RS08575at 1924.631 kb on - strand, within LRK53_RS08575at 1924.631 kb on - strand, within LRK53_RS08575at 1924.631 kb on - strand, within LRK53_RS08575at 1924.804 kb on - strand, within LRK53_RS08580at 1925.006 kb on + strand, within LRK53_RS08580at 1925.006 kb on + strand, within LRK53_RS08580at 1925.006 kb on + strand, within LRK53_RS08580at 1925.006 kb on + strand, within LRK53_RS08580at 1925.006 kb on + strand, within LRK53_RS08580at 1925.006 kb on + strand, within LRK53_RS08580at 1925.006 kb on + strand, within LRK53_RS08580at 1925.006 kb on + strand, within LRK53_RS08580at 1925.006 kb on + strand, within LRK53_RS08580at 1925.007 kb on - strand, within LRK53_RS08580at 1925.007 kb on - strand, within LRK53_RS08580at 1925.007 kb on - strand, within LRK53_RS08580at 1925.007 kb on - strand, within LRK53_RS08580at 1925.007 kb on - strand, within LRK53_RS08580at 1925.007 kb on - strand, within LRK53_RS08580at 1925.007 kb on - strand, within LRK53_RS08580at 1925.007 kb on - strand, within LRK53_RS08580at 1925.070 kb on + strand, within LRK53_RS08580at 1925.070 kb on + strand, within LRK53_RS08580at 1925.070 kb on + strand, within LRK53_RS08580at 1925.070 kb on + strand, within LRK53_RS08580at 1925.070 kb on + strand, within LRK53_RS08580at 1925.071 kb on - strand, within LRK53_RS08580at 1925.071 kb on - strand, within LRK53_RS08580at 1925.071 kb on - strand, within LRK53_RS08580at 1925.071 kb on - strand, within LRK53_RS08580at 1925.156 kb on + strandat 1925.171 kb on + strand, within LRK53_RS08585at 1925.172 kb on - strand, within LRK53_RS08585at 1925.172 kb on - strand, within LRK53_RS08585at 1925.172 kb on - strand, within LRK53_RS08585at 1925.172 kb on - strand, within LRK53_RS08585at 1925.172 kb on - strand, within LRK53_RS08585at 1925.172 kb on - strand, within LRK53_RS08585at 1925.174 kb on + strand, within LRK53_RS08585at 1925.175 kb on - strand, within LRK53_RS08585at 1925.175 kb on - strand, within LRK53_RS08585at 1925.175 kb on - strand, within LRK53_RS08585at 1925.252 kb on + strand, within LRK53_RS08585at 1925.252 kb on + strand, within LRK53_RS08585at 1925.252 kb on + strand, within LRK53_RS08585at 1925.253 kb on - strand, within LRK53_RS08585at 1925.253 kb on - strand, within LRK53_RS08585at 1925.253 kb on - strand, within LRK53_RS08585at 1925.253 kb on - strand, within LRK53_RS08585at 1925.253 kb on - strand, within LRK53_RS08585at 1925.261 kb on + strand, within LRK53_RS08585at 1925.261 kb on + strand, within LRK53_RS08585at 1925.262 kb on - strand, within LRK53_RS08585at 1925.262 kb on - strand, within LRK53_RS08585at 1925.264 kb on + strand, within LRK53_RS08585at 1925.265 kb on - strand, within LRK53_RS08585at 1925.265 kb on - strand, within LRK53_RS08585at 1925.287 kb on + strand, within LRK53_RS08585at 1925.287 kb on + strand, within LRK53_RS08585at 1925.287 kb on + strand, within LRK53_RS08585at 1925.288 kb on - strand, within LRK53_RS08585at 1925.288 kb on - strand, within LRK53_RS08585at 1925.288 kb on - strand, within LRK53_RS08585at 1925.297 kb on + strand, within LRK53_RS08585at 1925.297 kb on + strand, within LRK53_RS08585at 1925.297 kb on + strand, within LRK53_RS08585at 1925.297 kb on + strand, within LRK53_RS08585at 1925.297 kb on + strand, within LRK53_RS08585at 1925.297 kb on + strand, within LRK53_RS08585at 1925.297 kb on + strand, within LRK53_RS08585at 1925.297 kb on + strand, within LRK53_RS08585at 1925.298 kb on - strand, within LRK53_RS08585at 1925.298 kb on - strand, within LRK53_RS08585at 1925.298 kb on - strand, within LRK53_RS08585at 1925.298 kb on - strand, within LRK53_RS08585at 1925.298 kb on - strand, within LRK53_RS08585at 1925.298 kb on - strand, within LRK53_RS08585at 1925.298 kb on - strand, within LRK53_RS08585at 1925.298 kb on - strand, within LRK53_RS08585at 1925.477 kb on + strand, within LRK53_RS08585at 1925.477 kb on + strand, within LRK53_RS08585at 1925.477 kb on + strand, within LRK53_RS08585at 1925.478 kb on - strand, within LRK53_RS08585at 1925.478 kb on - strand, within LRK53_RS08585at 1925.478 kb on - strand, within LRK53_RS08585at 1925.478 kb on - strand, within LRK53_RS08585at 1925.576 kb on + strandat 1925.576 kb on + strandat 1925.576 kb on + strandat 1925.576 kb on + strandat 1925.577 kb on - strandat 1925.577 kb on - strandat 1925.577 kb on - strandat 1925.577 kb on - strandat 1925.577 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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1,924,176 + -2.0
1,924,176 + -0.4
1,924,176 + +0.4
1,924,630 + LRK53_RS08575 0.86 -0.6
1,924,630 + LRK53_RS08575 0.86 +1.0
1,924,631 - LRK53_RS08575 0.86 +0.3
1,924,631 - LRK53_RS08575 0.86 -0.9
1,924,631 - LRK53_RS08575 0.86 -1.0
1,924,631 - LRK53_RS08575 0.86 +0.5
1,924,631 - LRK53_RS08575 0.86 -0.4
1,924,631 - LRK53_RS08575 0.86 +0.7
1,924,804 - LRK53_RS08580 0.27 -1.3
1,925,006 + LRK53_RS08580 0.73 -1.0
1,925,006 + LRK53_RS08580 0.73 -1.0
1,925,006 + LRK53_RS08580 0.73 +0.1
1,925,006 + LRK53_RS08580 0.73 -0.9
1,925,006 + LRK53_RS08580 0.73 -1.0
1,925,006 + LRK53_RS08580 0.73 +1.0
1,925,006 + LRK53_RS08580 0.73 +1.4
1,925,006 + LRK53_RS08580 0.73 -1.5
1,925,006 + LRK53_RS08580 0.73 +1.1
1,925,007 - LRK53_RS08580 0.73 -0.1
1,925,007 - LRK53_RS08580 0.73 -0.2
1,925,007 - LRK53_RS08580 0.73 -0.8
1,925,007 - LRK53_RS08580 0.73 +0.1
1,925,007 - LRK53_RS08580 0.73 +0.2
1,925,007 - LRK53_RS08580 0.73 -1.2
1,925,007 - LRK53_RS08580 0.73 -0.6
1,925,007 - LRK53_RS08580 0.73 +0.6
1,925,070 + LRK53_RS08580 0.87 -0.7
1,925,070 + LRK53_RS08580 0.87 +0.3
1,925,070 + LRK53_RS08580 0.87 -0.7
1,925,070 + LRK53_RS08580 0.87 -0.1
1,925,070 + LRK53_RS08580 0.87 -0.9
1,925,071 - LRK53_RS08580 0.88 -0.3
1,925,071 - LRK53_RS08580 0.88 +0.7
1,925,071 - LRK53_RS08580 0.88 +1.0
1,925,071 - LRK53_RS08580 0.88 -1.9
1,925,156 + -2.9
1,925,171 + LRK53_RS08585 0.12 -0.9
1,925,172 - LRK53_RS08585 0.12 -0.1
1,925,172 - LRK53_RS08585 0.12 +1.4
1,925,172 - LRK53_RS08585 0.12 +0.1
1,925,172 - LRK53_RS08585 0.12 -0.3
1,925,172 - LRK53_RS08585 0.12 +2.4
1,925,172 - LRK53_RS08585 0.12 -2.0
1,925,174 + LRK53_RS08585 0.12 -0.2
1,925,175 - LRK53_RS08585 0.13 -0.1
1,925,175 - LRK53_RS08585 0.13 -0.1
1,925,175 - LRK53_RS08585 0.13 -0.5
1,925,252 + LRK53_RS08585 0.31 -0.8
1,925,252 + LRK53_RS08585 0.31 +0.4
1,925,252 + LRK53_RS08585 0.31 -0.9
1,925,253 - LRK53_RS08585 0.31 -1.9
1,925,253 - LRK53_RS08585 0.31 -0.8
1,925,253 - LRK53_RS08585 0.31 -0.2
1,925,253 - LRK53_RS08585 0.31 -0.1
1,925,253 - LRK53_RS08585 0.31 -0.7
1,925,261 + LRK53_RS08585 0.33 -1.4
1,925,261 + LRK53_RS08585 0.33 -1.3
1,925,262 - LRK53_RS08585 0.33 -1.3
1,925,262 - LRK53_RS08585 0.33 +2.0
1,925,264 + LRK53_RS08585 0.34 +0.6
1,925,265 - LRK53_RS08585 0.34 -0.9
1,925,265 - LRK53_RS08585 0.34 +1.0
1,925,287 + LRK53_RS08585 0.39 -0.8
1,925,287 + LRK53_RS08585 0.39 +1.8
1,925,287 + LRK53_RS08585 0.39 -0.7
1,925,288 - LRK53_RS08585 0.40 -0.3
1,925,288 - LRK53_RS08585 0.40 +0.2
1,925,288 - LRK53_RS08585 0.40 -1.6
1,925,297 + LRK53_RS08585 0.42 +0.6
1,925,297 + LRK53_RS08585 0.42 -0.8
1,925,297 + LRK53_RS08585 0.42 -0.9
1,925,297 + LRK53_RS08585 0.42 -0.9
1,925,297 + LRK53_RS08585 0.42 -0.1
1,925,297 + LRK53_RS08585 0.42 +0.1
1,925,297 + LRK53_RS08585 0.42 -0.6
1,925,297 + LRK53_RS08585 0.42 -0.4
1,925,298 - LRK53_RS08585 0.42 +0.1
1,925,298 - LRK53_RS08585 0.42 -0.4
1,925,298 - LRK53_RS08585 0.42 +0.2
1,925,298 - LRK53_RS08585 0.42 -2.1
1,925,298 - LRK53_RS08585 0.42 -1.6
1,925,298 - LRK53_RS08585 0.42 -0.9
1,925,298 - LRK53_RS08585 0.42 +1.3
1,925,298 - LRK53_RS08585 0.42 -1.1
1,925,477 + LRK53_RS08585 0.85 +1.9
1,925,477 + LRK53_RS08585 0.85 +0.6
1,925,477 + LRK53_RS08585 0.85 -0.7
1,925,478 - LRK53_RS08585 0.85 -1.6
1,925,478 - LRK53_RS08585 0.85 -1.1
1,925,478 - LRK53_RS08585 0.85 -3.6
1,925,478 - LRK53_RS08585 0.85 -0.1
1,925,576 + -1.6
1,925,576 + +0.1
1,925,576 + -1.4
1,925,576 + -1.1
1,925,577 - +1.8
1,925,577 - -1.6
1,925,577 - -0.3
1,925,577 - -0.1
1,925,577 - -0.7

Or see this region's nucleotide sequence