Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS08565 and LRK53_RS08570 overlap by 41 nucleotides LRK53_RS08570 and LRK53_RS08575 are separated by 221 nucleotides LRK53_RS08575 and LRK53_RS08580 are separated by 20 nucleotides LRK53_RS08580 and LRK53_RS08585 overlap by 4 nucleotides
LRK53_RS08565: LRK53_RS08565 - winged helix-turn-helix domain-containing protein, at 1,923,132 to 1,923,656
_RS08565
LRK53_RS08570: LRK53_RS08570 - IS630 family transposase, at 1,923,616 to 1,924,197
_RS08570
LRK53_RS08575: LRK53_RS08575 - RNA-binding S4 domain-containing protein, at 1,924,419 to 1,924,664
_RS08575
LRK53_RS08580: LRK53_RS08580 - barstar family protein, at 1,924,685 to 1,925,125
_RS08580
LRK53_RS08585: LRK53_RS08585 - ribonuclease, at 1,925,122 to 1,925,541
_RS08585
Position (kb)
1924
1925 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1924.176 kb on + strand at 1924.176 kb on + strand at 1924.176 kb on + strand at 1924.630 kb on + strand, within LRK53_RS08575 at 1924.630 kb on + strand, within LRK53_RS08575 at 1924.631 kb on - strand, within LRK53_RS08575 at 1924.631 kb on - strand, within LRK53_RS08575 at 1924.631 kb on - strand, within LRK53_RS08575 at 1924.631 kb on - strand, within LRK53_RS08575 at 1924.631 kb on - strand, within LRK53_RS08575 at 1924.631 kb on - strand, within LRK53_RS08575 at 1924.804 kb on - strand, within LRK53_RS08580 at 1925.006 kb on + strand, within LRK53_RS08580 at 1925.006 kb on + strand, within LRK53_RS08580 at 1925.006 kb on + strand, within LRK53_RS08580 at 1925.006 kb on + strand, within LRK53_RS08580 at 1925.006 kb on + strand, within LRK53_RS08580 at 1925.006 kb on + strand, within LRK53_RS08580 at 1925.006 kb on + strand, within LRK53_RS08580 at 1925.006 kb on + strand, within LRK53_RS08580 at 1925.006 kb on + strand, within LRK53_RS08580 at 1925.007 kb on - strand, within LRK53_RS08580 at 1925.007 kb on - strand, within LRK53_RS08580 at 1925.007 kb on - strand, within LRK53_RS08580 at 1925.007 kb on - strand, within LRK53_RS08580 at 1925.007 kb on - strand, within LRK53_RS08580 at 1925.007 kb on - strand, within LRK53_RS08580 at 1925.007 kb on - strand, within LRK53_RS08580 at 1925.007 kb on - strand, within LRK53_RS08580 at 1925.070 kb on + strand, within LRK53_RS08580 at 1925.070 kb on + strand, within LRK53_RS08580 at 1925.070 kb on + strand, within LRK53_RS08580 at 1925.070 kb on + strand, within LRK53_RS08580 at 1925.070 kb on + strand, within LRK53_RS08580 at 1925.071 kb on - strand, within LRK53_RS08580 at 1925.071 kb on - strand, within LRK53_RS08580 at 1925.071 kb on - strand, within LRK53_RS08580 at 1925.071 kb on - strand, within LRK53_RS08580 at 1925.156 kb on + strand at 1925.171 kb on + strand, within LRK53_RS08585 at 1925.172 kb on - strand, within LRK53_RS08585 at 1925.172 kb on - strand, within LRK53_RS08585 at 1925.172 kb on - strand, within LRK53_RS08585 at 1925.172 kb on - strand, within LRK53_RS08585 at 1925.172 kb on - strand, within LRK53_RS08585 at 1925.172 kb on - strand, within LRK53_RS08585 at 1925.174 kb on + strand, within LRK53_RS08585 at 1925.175 kb on - strand, within LRK53_RS08585 at 1925.175 kb on - strand, within LRK53_RS08585 at 1925.175 kb on - strand, within LRK53_RS08585 at 1925.252 kb on + strand, within LRK53_RS08585 at 1925.252 kb on + strand, within LRK53_RS08585 at 1925.252 kb on + strand, within LRK53_RS08585 at 1925.253 kb on - strand, within LRK53_RS08585 at 1925.253 kb on - strand, within LRK53_RS08585 at 1925.253 kb on - strand, within LRK53_RS08585 at 1925.253 kb on - strand, within LRK53_RS08585 at 1925.253 kb on - strand, within LRK53_RS08585 at 1925.261 kb on + strand, within LRK53_RS08585 at 1925.261 kb on + strand, within LRK53_RS08585 at 1925.262 kb on - strand, within LRK53_RS08585 at 1925.262 kb on - strand, within LRK53_RS08585 at 1925.264 kb on + strand, within LRK53_RS08585 at 1925.265 kb on - strand, within LRK53_RS08585 at 1925.265 kb on - strand, within LRK53_RS08585 at 1925.287 kb on + strand, within LRK53_RS08585 at 1925.287 kb on + strand, within LRK53_RS08585 at 1925.287 kb on + strand, within LRK53_RS08585 at 1925.288 kb on - strand, within LRK53_RS08585 at 1925.288 kb on - strand, within LRK53_RS08585 at 1925.288 kb on - strand, within LRK53_RS08585 at 1925.297 kb on + strand, within LRK53_RS08585 at 1925.297 kb on + strand, within LRK53_RS08585 at 1925.297 kb on + strand, within LRK53_RS08585 at 1925.297 kb on + strand, within LRK53_RS08585 at 1925.297 kb on + strand, within LRK53_RS08585 at 1925.297 kb on + strand, within LRK53_RS08585 at 1925.297 kb on + strand, within LRK53_RS08585 at 1925.297 kb on + strand, within LRK53_RS08585 at 1925.298 kb on - strand, within LRK53_RS08585 at 1925.298 kb on - strand, within LRK53_RS08585 at 1925.298 kb on - strand, within LRK53_RS08585 at 1925.298 kb on - strand, within LRK53_RS08585 at 1925.298 kb on - strand, within LRK53_RS08585 at 1925.298 kb on - strand, within LRK53_RS08585 at 1925.298 kb on - strand, within LRK53_RS08585 at 1925.298 kb on - strand, within LRK53_RS08585 at 1925.477 kb on + strand, within LRK53_RS08585 at 1925.477 kb on + strand, within LRK53_RS08585 at 1925.477 kb on + strand, within LRK53_RS08585 at 1925.478 kb on - strand, within LRK53_RS08585 at 1925.478 kb on - strand, within LRK53_RS08585 at 1925.478 kb on - strand, within LRK53_RS08585 at 1925.478 kb on - strand, within LRK53_RS08585 at 1925.576 kb on + strand at 1925.576 kb on + strand at 1925.576 kb on + strand at 1925.576 kb on + strand at 1925.577 kb on - strand at 1925.577 kb on - strand at 1925.577 kb on - strand at 1925.577 kb on - strand at 1925.577 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 1,924,176 + -2.0 1,924,176 + -0.4 1,924,176 + +0.4 1,924,630 + LRK53_RS08575 0.86 -0.6 1,924,630 + LRK53_RS08575 0.86 +1.0 1,924,631 - LRK53_RS08575 0.86 +0.3 1,924,631 - LRK53_RS08575 0.86 -0.9 1,924,631 - LRK53_RS08575 0.86 -1.0 1,924,631 - LRK53_RS08575 0.86 +0.5 1,924,631 - LRK53_RS08575 0.86 -0.4 1,924,631 - LRK53_RS08575 0.86 +0.7 1,924,804 - LRK53_RS08580 0.27 -1.3 1,925,006 + LRK53_RS08580 0.73 -1.0 1,925,006 + LRK53_RS08580 0.73 -1.0 1,925,006 + LRK53_RS08580 0.73 +0.1 1,925,006 + LRK53_RS08580 0.73 -0.9 1,925,006 + LRK53_RS08580 0.73 -1.0 1,925,006 + LRK53_RS08580 0.73 +1.0 1,925,006 + LRK53_RS08580 0.73 +1.4 1,925,006 + LRK53_RS08580 0.73 -1.5 1,925,006 + LRK53_RS08580 0.73 +1.1 1,925,007 - LRK53_RS08580 0.73 -0.1 1,925,007 - LRK53_RS08580 0.73 -0.2 1,925,007 - LRK53_RS08580 0.73 -0.8 1,925,007 - LRK53_RS08580 0.73 +0.1 1,925,007 - LRK53_RS08580 0.73 +0.2 1,925,007 - LRK53_RS08580 0.73 -1.2 1,925,007 - LRK53_RS08580 0.73 -0.6 1,925,007 - LRK53_RS08580 0.73 +0.6 1,925,070 + LRK53_RS08580 0.87 -0.7 1,925,070 + LRK53_RS08580 0.87 +0.3 1,925,070 + LRK53_RS08580 0.87 -0.7 1,925,070 + LRK53_RS08580 0.87 -0.1 1,925,070 + LRK53_RS08580 0.87 -0.9 1,925,071 - LRK53_RS08580 0.88 -0.3 1,925,071 - LRK53_RS08580 0.88 +0.7 1,925,071 - LRK53_RS08580 0.88 +1.0 1,925,071 - LRK53_RS08580 0.88 -1.9 1,925,156 + -2.9 1,925,171 + LRK53_RS08585 0.12 -0.9 1,925,172 - LRK53_RS08585 0.12 -0.1 1,925,172 - LRK53_RS08585 0.12 +1.4 1,925,172 - LRK53_RS08585 0.12 +0.1 1,925,172 - LRK53_RS08585 0.12 -0.3 1,925,172 - LRK53_RS08585 0.12 +2.4 1,925,172 - LRK53_RS08585 0.12 -2.0 1,925,174 + LRK53_RS08585 0.12 -0.2 1,925,175 - LRK53_RS08585 0.13 -0.1 1,925,175 - LRK53_RS08585 0.13 -0.1 1,925,175 - LRK53_RS08585 0.13 -0.5 1,925,252 + LRK53_RS08585 0.31 -0.8 1,925,252 + LRK53_RS08585 0.31 +0.4 1,925,252 + LRK53_RS08585 0.31 -0.9 1,925,253 - LRK53_RS08585 0.31 -1.9 1,925,253 - LRK53_RS08585 0.31 -0.8 1,925,253 - LRK53_RS08585 0.31 -0.2 1,925,253 - LRK53_RS08585 0.31 -0.1 1,925,253 - LRK53_RS08585 0.31 -0.7 1,925,261 + LRK53_RS08585 0.33 -1.4 1,925,261 + LRK53_RS08585 0.33 -1.3 1,925,262 - LRK53_RS08585 0.33 -1.3 1,925,262 - LRK53_RS08585 0.33 +2.0 1,925,264 + LRK53_RS08585 0.34 +0.6 1,925,265 - LRK53_RS08585 0.34 -0.9 1,925,265 - LRK53_RS08585 0.34 +1.0 1,925,287 + LRK53_RS08585 0.39 -0.8 1,925,287 + LRK53_RS08585 0.39 +1.8 1,925,287 + LRK53_RS08585 0.39 -0.7 1,925,288 - LRK53_RS08585 0.40 -0.3 1,925,288 - LRK53_RS08585 0.40 +0.2 1,925,288 - LRK53_RS08585 0.40 -1.6 1,925,297 + LRK53_RS08585 0.42 +0.6 1,925,297 + LRK53_RS08585 0.42 -0.8 1,925,297 + LRK53_RS08585 0.42 -0.9 1,925,297 + LRK53_RS08585 0.42 -0.9 1,925,297 + LRK53_RS08585 0.42 -0.1 1,925,297 + LRK53_RS08585 0.42 +0.1 1,925,297 + LRK53_RS08585 0.42 -0.6 1,925,297 + LRK53_RS08585 0.42 -0.4 1,925,298 - LRK53_RS08585 0.42 +0.1 1,925,298 - LRK53_RS08585 0.42 -0.4 1,925,298 - LRK53_RS08585 0.42 +0.2 1,925,298 - LRK53_RS08585 0.42 -2.1 1,925,298 - LRK53_RS08585 0.42 -1.6 1,925,298 - LRK53_RS08585 0.42 -0.9 1,925,298 - LRK53_RS08585 0.42 +1.3 1,925,298 - LRK53_RS08585 0.42 -1.1 1,925,477 + LRK53_RS08585 0.85 +1.9 1,925,477 + LRK53_RS08585 0.85 +0.6 1,925,477 + LRK53_RS08585 0.85 -0.7 1,925,478 - LRK53_RS08585 0.85 -1.6 1,925,478 - LRK53_RS08585 0.85 -1.1 1,925,478 - LRK53_RS08585 0.85 -3.6 1,925,478 - LRK53_RS08585 0.85 -0.1 1,925,576 + -1.6 1,925,576 + +0.1 1,925,576 + -1.4 1,925,576 + -1.1 1,925,577 - +1.8 1,925,577 - -1.6 1,925,577 - -0.3 1,925,577 - -0.1 1,925,577 - -0.7
Or see this region's nucleotide sequence