Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS07690 and LRK53_RS07695 are separated by 18 nucleotides LRK53_RS07695 and LRK53_RS07700 are separated by 117 nucleotides LRK53_RS07700 and LRK53_RS07705 overlap by 4 nucleotides
LRK53_RS07690: LRK53_RS07690 - IS110 family transposase, at 1,717,426 to 1,718,448
_RS07690
LRK53_RS07695: LRK53_RS07695 - enoyl-CoA hydratase-related protein, at 1,718,467 to 1,719,261
_RS07695
LRK53_RS07700: LRK53_RS07700 - ferrous iron transport protein A, at 1,719,379 to 1,719,624
_RS07700
LRK53_RS07705: LRK53_RS07705 - ferrous iron transporter B, at 1,719,621 to 1,721,456
_RS07705
Position (kb)
1718
1719
1720 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1718.464 kb on + strand at 1718.464 kb on + strand at 1718.464 kb on + strand at 1718.464 kb on + strand at 1718.464 kb on + strand at 1718.464 kb on + strand at 1718.468 kb on + strand at 1718.468 kb on + strand at 1718.468 kb on + strand at 1718.468 kb on + strand at 1718.468 kb on + strand at 1718.468 kb on + strand at 1718.468 kb on + strand at 1718.468 kb on + strand at 1718.581 kb on - strand, within LRK53_RS07695 at 1718.581 kb on - strand, within LRK53_RS07695 at 1718.819 kb on + strand, within LRK53_RS07695 at 1718.820 kb on - strand, within LRK53_RS07695 at 1718.820 kb on - strand, within LRK53_RS07695 at 1718.933 kb on + strand, within LRK53_RS07695 at 1719.238 kb on + strand at 1719.238 kb on + strand at 1719.239 kb on - strand at 1719.239 kb on - strand at 1719.292 kb on + strand at 1719.292 kb on + strand at 1719.293 kb on - strand at 1719.293 kb on - strand at 1719.293 kb on - strand at 1719.344 kb on + strand at 1719.723 kb on + strand at 1719.723 kb on + strand at 1719.723 kb on + strand at 1719.723 kb on + strand at 1719.724 kb on - strand at 1719.724 kb on - strand at 1719.724 kb on - strand at 1719.811 kb on - strand, within LRK53_RS07705 at 1719.811 kb on - strand, within LRK53_RS07705 at 1719.870 kb on + strand, within LRK53_RS07705 at 1719.870 kb on + strand, within LRK53_RS07705 at 1719.871 kb on - strand, within LRK53_RS07705 at 1719.871 kb on - strand, within LRK53_RS07705
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 1,718,464 + -0.4 1,718,464 + -0.5 1,718,464 + -1.0 1,718,464 + -1.5 1,718,464 + -1.0 1,718,464 + -0.7 1,718,468 + -0.5 1,718,468 + +1.1 1,718,468 + -0.9 1,718,468 + +0.3 1,718,468 + -0.3 1,718,468 + +0.0 1,718,468 + +0.1 1,718,468 + -0.6 1,718,581 - LRK53_RS07695 0.14 +0.9 1,718,581 - LRK53_RS07695 0.14 +1.5 1,718,819 + LRK53_RS07695 0.44 +1.8 1,718,820 - LRK53_RS07695 0.44 -1.9 1,718,820 - LRK53_RS07695 0.44 +1.0 1,718,933 + LRK53_RS07695 0.59 -1.2 1,719,238 + +0.0 1,719,238 + -0.8 1,719,239 - -0.9 1,719,239 - -1.3 1,719,292 + -0.1 1,719,292 + +0.2 1,719,293 - +0.2 1,719,293 - -1.1 1,719,293 - -0.9 1,719,344 + +0.1 1,719,723 + +1.7 1,719,723 + -1.1 1,719,723 + -1.8 1,719,723 + -0.4 1,719,724 - -0.3 1,719,724 - -1.0 1,719,724 - +0.2 1,719,811 - LRK53_RS07705 0.10 -0.1 1,719,811 - LRK53_RS07705 0.10 -0.4 1,719,870 + LRK53_RS07705 0.14 -0.8 1,719,870 + LRK53_RS07705 0.14 -0.3 1,719,871 - LRK53_RS07705 0.14 -0.7 1,719,871 - LRK53_RS07705 0.14 -0.6
Or see this region's nucleotide sequence