Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS07695

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS07690 and LRK53_RS07695 are separated by 18 nucleotidesLRK53_RS07695 and LRK53_RS07700 are separated by 117 nucleotidesLRK53_RS07700 and LRK53_RS07705 overlap by 4 nucleotides LRK53_RS07690: LRK53_RS07690 - IS110 family transposase, at 1,717,426 to 1,718,448 _RS07690 LRK53_RS07695: LRK53_RS07695 - enoyl-CoA hydratase-related protein, at 1,718,467 to 1,719,261 _RS07695 LRK53_RS07700: LRK53_RS07700 - ferrous iron transport protein A, at 1,719,379 to 1,719,624 _RS07700 LRK53_RS07705: LRK53_RS07705 - ferrous iron transporter B, at 1,719,621 to 1,721,456 _RS07705 Position (kb) 1718 1719 1720Strain fitness (log2 ratio) -2 -1 0 1 2at 1718.464 kb on + strandat 1718.464 kb on + strandat 1718.464 kb on + strandat 1718.464 kb on + strandat 1718.464 kb on + strandat 1718.464 kb on + strandat 1718.468 kb on + strandat 1718.468 kb on + strandat 1718.468 kb on + strandat 1718.468 kb on + strandat 1718.468 kb on + strandat 1718.468 kb on + strandat 1718.468 kb on + strandat 1718.468 kb on + strandat 1718.581 kb on - strand, within LRK53_RS07695at 1718.581 kb on - strand, within LRK53_RS07695at 1718.819 kb on + strand, within LRK53_RS07695at 1718.820 kb on - strand, within LRK53_RS07695at 1718.820 kb on - strand, within LRK53_RS07695at 1718.933 kb on + strand, within LRK53_RS07695at 1719.238 kb on + strandat 1719.238 kb on + strandat 1719.239 kb on - strandat 1719.239 kb on - strandat 1719.292 kb on + strandat 1719.292 kb on + strandat 1719.293 kb on - strandat 1719.293 kb on - strandat 1719.293 kb on - strandat 1719.344 kb on + strandat 1719.723 kb on + strandat 1719.723 kb on + strandat 1719.723 kb on + strandat 1719.723 kb on + strandat 1719.724 kb on - strandat 1719.724 kb on - strandat 1719.724 kb on - strandat 1719.811 kb on - strand, within LRK53_RS07705at 1719.811 kb on - strand, within LRK53_RS07705at 1719.870 kb on + strand, within LRK53_RS07705at 1719.870 kb on + strand, within LRK53_RS07705at 1719.871 kb on - strand, within LRK53_RS07705at 1719.871 kb on - strand, within LRK53_RS07705

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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1,718,464 + -0.4
1,718,464 + -0.5
1,718,464 + -1.0
1,718,464 + -1.5
1,718,464 + -1.0
1,718,464 + -0.7
1,718,468 + -0.5
1,718,468 + +1.1
1,718,468 + -0.9
1,718,468 + +0.3
1,718,468 + -0.3
1,718,468 + +0.0
1,718,468 + +0.1
1,718,468 + -0.6
1,718,581 - LRK53_RS07695 0.14 +0.9
1,718,581 - LRK53_RS07695 0.14 +1.5
1,718,819 + LRK53_RS07695 0.44 +1.8
1,718,820 - LRK53_RS07695 0.44 -1.9
1,718,820 - LRK53_RS07695 0.44 +1.0
1,718,933 + LRK53_RS07695 0.59 -1.2
1,719,238 + +0.0
1,719,238 + -0.8
1,719,239 - -0.9
1,719,239 - -1.3
1,719,292 + -0.1
1,719,292 + +0.2
1,719,293 - +0.2
1,719,293 - -1.1
1,719,293 - -0.9
1,719,344 + +0.1
1,719,723 + +1.7
1,719,723 + -1.1
1,719,723 + -1.8
1,719,723 + -0.4
1,719,724 - -0.3
1,719,724 - -1.0
1,719,724 - +0.2
1,719,811 - LRK53_RS07705 0.10 -0.1
1,719,811 - LRK53_RS07705 0.10 -0.4
1,719,870 + LRK53_RS07705 0.14 -0.8
1,719,870 + LRK53_RS07705 0.14 -0.3
1,719,871 - LRK53_RS07705 0.14 -0.7
1,719,871 - LRK53_RS07705 0.14 -0.6

Or see this region's nucleotide sequence