Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS07500

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS07495 and LRK53_RS07500 are separated by 122 nucleotidesLRK53_RS07500 and LRK53_RS07505 are separated by 838 nucleotides LRK53_RS07495: LRK53_RS07495 - GTP cyclohydrolase FolE2, at 1,675,035 to 1,675,982 _RS07495 LRK53_RS07500: LRK53_RS07500 - membrane protein insertion efficiency factor YidD, at 1,676,105 to 1,676,347 _RS07500 LRK53_RS07505: LRK53_RS07505 - RNA polymerase-binding protein DksA, at 1,677,186 to 1,677,674 _RS07505 Position (kb) 1676 1677Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1676.044 kb on + strandat 1676.045 kb on - strandat 1676.092 kb on + strandat 1676.093 kb on - strandat 1676.126 kb on + strandat 1676.126 kb on + strandat 1676.126 kb on + strandat 1676.126 kb on + strandat 1676.126 kb on + strandat 1676.126 kb on + strandat 1676.126 kb on + strandat 1676.126 kb on + strandat 1676.126 kb on + strandat 1676.126 kb on + strandat 1676.126 kb on + strandat 1676.126 kb on + strandat 1676.126 kb on + strandat 1676.126 kb on + strandat 1676.126 kb on + strandat 1676.126 kb on + strandat 1676.127 kb on - strandat 1676.127 kb on - strandat 1676.127 kb on - strandat 1676.127 kb on - strandat 1676.127 kb on - strandat 1676.127 kb on - strandat 1676.127 kb on - strandat 1676.127 kb on - strandat 1676.127 kb on - strandat 1676.127 kb on - strandat 1676.127 kb on - strandat 1676.127 kb on - strandat 1676.127 kb on - strandat 1676.127 kb on - strandat 1676.127 kb on - strandat 1676.127 kb on - strandat 1676.271 kb on + strand, within LRK53_RS07500at 1676.271 kb on + strand, within LRK53_RS07500at 1676.271 kb on + strand, within LRK53_RS07500at 1676.272 kb on - strand, within LRK53_RS07500at 1676.334 kb on + strandat 1676.334 kb on + strandat 1676.335 kb on - strandat 1676.335 kb on - strandat 1676.335 kb on - strandat 1676.354 kb on + strandat 1676.354 kb on + strandat 1676.354 kb on + strandat 1676.354 kb on + strandat 1676.354 kb on + strandat 1676.354 kb on + strandat 1676.354 kb on + strandat 1676.354 kb on + strandat 1676.355 kb on - strandat 1676.355 kb on - strandat 1676.355 kb on - strandat 1676.355 kb on - strandat 1676.355 kb on - strandat 1676.355 kb on - strandat 1676.355 kb on - strandat 1676.355 kb on - strandat 1676.403 kb on - strandat 1676.408 kb on + strandat 1676.408 kb on + strandat 1676.408 kb on + strandat 1676.408 kb on + strandat 1676.408 kb on + strandat 1676.408 kb on + strandat 1676.408 kb on + strandat 1676.408 kb on + strandat 1676.408 kb on + strandat 1676.408 kb on + strandat 1676.408 kb on + strandat 1676.408 kb on + strandat 1676.408 kb on + strandat 1676.408 kb on + strandat 1676.408 kb on + strandat 1676.408 kb on + strandat 1676.408 kb on + strandat 1676.408 kb on + strandat 1676.408 kb on + strandat 1676.409 kb on - strandat 1676.409 kb on - strandat 1676.409 kb on - strandat 1676.409 kb on - strandat 1676.409 kb on - strandat 1676.409 kb on - strandat 1676.409 kb on - strandat 1676.409 kb on - strandat 1676.409 kb on - strandat 1676.409 kb on - strandat 1676.409 kb on - strandat 1676.414 kb on + strandat 1676.414 kb on + strandat 1676.414 kb on + strandat 1676.414 kb on + strandat 1676.414 kb on + strandat 1676.414 kb on + strandat 1676.414 kb on + strandat 1676.414 kb on + strandat 1676.414 kb on + strandat 1676.414 kb on + strandat 1676.414 kb on + strandat 1676.414 kb on + strandat 1676.414 kb on + strandat 1676.414 kb on + strandat 1676.415 kb on - strandat 1676.415 kb on - strandat 1676.415 kb on - strandat 1676.415 kb on - strandat 1676.415 kb on - strandat 1676.415 kb on - strandat 1676.453 kb on + strandat 1676.453 kb on + strandat 1676.453 kb on + strandat 1676.453 kb on + strandat 1676.453 kb on + strandat 1676.455 kb on + strandat 1676.455 kb on + strandat 1676.455 kb on + strandat 1676.455 kb on + strandat 1676.455 kb on + strandat 1676.455 kb on + strandat 1676.455 kb on + strandat 1676.455 kb on + strandat 1676.455 kb on + strandat 1676.492 kb on + strandat 1676.510 kb on + strandat 1676.510 kb on + strandat 1676.510 kb on + strandat 1676.510 kb on + strandat 1676.510 kb on + strandat 1676.510 kb on + strandat 1676.510 kb on + strandat 1676.510 kb on + strandat 1676.510 kb on + strandat 1676.510 kb on + strandat 1676.510 kb on + strandat 1676.510 kb on + strandat 1676.510 kb on + strandat 1676.510 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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1,676,044 + -1.3
1,676,045 - +0.1
1,676,092 + -1.2
1,676,093 - +0.9
1,676,126 + +0.2
1,676,126 + +1.4
1,676,126 + -1.3
1,676,126 + +0.5
1,676,126 + +1.7
1,676,126 + -0.0
1,676,126 + +1.2
1,676,126 + -0.6
1,676,126 + -1.1
1,676,126 + +0.6
1,676,126 + -0.7
1,676,126 + +0.8
1,676,126 + -1.0
1,676,126 + -0.3
1,676,126 + -2.1
1,676,126 + -0.4
1,676,127 - +0.9
1,676,127 - -0.1
1,676,127 - +1.2
1,676,127 - -0.2
1,676,127 - +0.7
1,676,127 - +0.4
1,676,127 - -1.5
1,676,127 - +1.7
1,676,127 - -0.5
1,676,127 - -0.3
1,676,127 - -1.3
1,676,127 - -0.6
1,676,127 - +1.9
1,676,127 - +0.2
1,676,127 - -2.6
1,676,127 - -2.9
1,676,271 + LRK53_RS07500 0.68 -0.1
1,676,271 + LRK53_RS07500 0.68 -0.3
1,676,271 + LRK53_RS07500 0.68 -0.7
1,676,272 - LRK53_RS07500 0.69 -2.6
1,676,334 + -1.3
1,676,334 + -2.4
1,676,335 - -1.5
1,676,335 - +1.8
1,676,335 - -1.0
1,676,354 + -0.5
1,676,354 + -1.8
1,676,354 + -2.4
1,676,354 + +0.7
1,676,354 + -0.8
1,676,354 + +0.5
1,676,354 + +1.5
1,676,354 + -0.1
1,676,355 - +0.5
1,676,355 - +1.3
1,676,355 - -1.1
1,676,355 - +0.3
1,676,355 - +0.3
1,676,355 - -0.3
1,676,355 - -0.3
1,676,355 - -0.5
1,676,403 - -1.3
1,676,408 + +1.0
1,676,408 + -2.7
1,676,408 + -1.8
1,676,408 + -0.2
1,676,408 + +0.2
1,676,408 + -0.3
1,676,408 + +0.3
1,676,408 + +0.5
1,676,408 + -0.6
1,676,408 + -1.2
1,676,408 + +0.9
1,676,408 + +0.2
1,676,408 + -0.6
1,676,408 + -0.8
1,676,408 + +0.5
1,676,408 + -0.6
1,676,408 + -1.7
1,676,408 + +1.1
1,676,408 + +0.5
1,676,409 - -0.7
1,676,409 - +1.8
1,676,409 - -0.5
1,676,409 - -0.1
1,676,409 - +1.6
1,676,409 - +1.3
1,676,409 - -0.0
1,676,409 - -1.4
1,676,409 - -1.3
1,676,409 - -1.3
1,676,409 - +1.3
1,676,414 + -0.3
1,676,414 + -0.1
1,676,414 + +0.4
1,676,414 + -0.3
1,676,414 + -0.4
1,676,414 + -0.5
1,676,414 + -2.0
1,676,414 + -0.3
1,676,414 + -0.8
1,676,414 + -1.0
1,676,414 + +0.7
1,676,414 + +0.3
1,676,414 + -0.1
1,676,414 + -1.1
1,676,415 - -1.6
1,676,415 - +0.2
1,676,415 - -1.3
1,676,415 - -0.5
1,676,415 - -0.2
1,676,415 - -1.3
1,676,453 + -0.5
1,676,453 + +0.1
1,676,453 + +1.5
1,676,453 + +0.7
1,676,453 + -2.2
1,676,455 + +0.9
1,676,455 + +0.4
1,676,455 + +0.5
1,676,455 + +0.1
1,676,455 + -0.3
1,676,455 + -0.5
1,676,455 + +1.5
1,676,455 + -1.1
1,676,455 + +0.2
1,676,492 + -1.0
1,676,510 + +1.2
1,676,510 + +0.7
1,676,510 + -0.3
1,676,510 + +1.4
1,676,510 + -1.0
1,676,510 + +0.4
1,676,510 + +0.4
1,676,510 + +0.6
1,676,510 + -0.3
1,676,510 + +0.2
1,676,510 + -0.7
1,676,510 + +1.1
1,676,510 + -1.1
1,676,510 + +0.1

Or see this region's nucleotide sequence