Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS07495 and LRK53_RS07500 are separated by 122 nucleotides LRK53_RS07500 and LRK53_RS07505 are separated by 838 nucleotides
LRK53_RS07495: LRK53_RS07495 - GTP cyclohydrolase FolE2, at 1,675,035 to 1,675,982
_RS07495
LRK53_RS07500: LRK53_RS07500 - membrane protein insertion efficiency factor YidD, at 1,676,105 to 1,676,347
_RS07500
LRK53_RS07505: LRK53_RS07505 - RNA polymerase-binding protein DksA, at 1,677,186 to 1,677,674
_RS07505
Position (kb)
1676
1677 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1676.044 kb on + strand at 1676.045 kb on - strand at 1676.092 kb on + strand at 1676.093 kb on - strand at 1676.126 kb on + strand at 1676.126 kb on + strand at 1676.126 kb on + strand at 1676.126 kb on + strand at 1676.126 kb on + strand at 1676.126 kb on + strand at 1676.126 kb on + strand at 1676.126 kb on + strand at 1676.126 kb on + strand at 1676.126 kb on + strand at 1676.126 kb on + strand at 1676.126 kb on + strand at 1676.126 kb on + strand at 1676.126 kb on + strand at 1676.126 kb on + strand at 1676.126 kb on + strand at 1676.127 kb on - strand at 1676.127 kb on - strand at 1676.127 kb on - strand at 1676.127 kb on - strand at 1676.127 kb on - strand at 1676.127 kb on - strand at 1676.127 kb on - strand at 1676.127 kb on - strand at 1676.127 kb on - strand at 1676.127 kb on - strand at 1676.127 kb on - strand at 1676.127 kb on - strand at 1676.127 kb on - strand at 1676.127 kb on - strand at 1676.127 kb on - strand at 1676.127 kb on - strand at 1676.271 kb on + strand, within LRK53_RS07500 at 1676.271 kb on + strand, within LRK53_RS07500 at 1676.271 kb on + strand, within LRK53_RS07500 at 1676.272 kb on - strand, within LRK53_RS07500 at 1676.334 kb on + strand at 1676.334 kb on + strand at 1676.335 kb on - strand at 1676.335 kb on - strand at 1676.335 kb on - strand at 1676.354 kb on + strand at 1676.354 kb on + strand at 1676.354 kb on + strand at 1676.354 kb on + strand at 1676.354 kb on + strand at 1676.354 kb on + strand at 1676.354 kb on + strand at 1676.354 kb on + strand at 1676.355 kb on - strand at 1676.355 kb on - strand at 1676.355 kb on - strand at 1676.355 kb on - strand at 1676.355 kb on - strand at 1676.355 kb on - strand at 1676.355 kb on - strand at 1676.355 kb on - strand at 1676.403 kb on - strand at 1676.408 kb on + strand at 1676.408 kb on + strand at 1676.408 kb on + strand at 1676.408 kb on + strand at 1676.408 kb on + strand at 1676.408 kb on + strand at 1676.408 kb on + strand at 1676.408 kb on + strand at 1676.408 kb on + strand at 1676.408 kb on + strand at 1676.408 kb on + strand at 1676.408 kb on + strand at 1676.408 kb on + strand at 1676.408 kb on + strand at 1676.408 kb on + strand at 1676.408 kb on + strand at 1676.408 kb on + strand at 1676.408 kb on + strand at 1676.408 kb on + strand at 1676.409 kb on - strand at 1676.409 kb on - strand at 1676.409 kb on - strand at 1676.409 kb on - strand at 1676.409 kb on - strand at 1676.409 kb on - strand at 1676.409 kb on - strand at 1676.409 kb on - strand at 1676.409 kb on - strand at 1676.409 kb on - strand at 1676.409 kb on - strand at 1676.414 kb on + strand at 1676.414 kb on + strand at 1676.414 kb on + strand at 1676.414 kb on + strand at 1676.414 kb on + strand at 1676.414 kb on + strand at 1676.414 kb on + strand at 1676.414 kb on + strand at 1676.414 kb on + strand at 1676.414 kb on + strand at 1676.414 kb on + strand at 1676.414 kb on + strand at 1676.414 kb on + strand at 1676.414 kb on + strand at 1676.415 kb on - strand at 1676.415 kb on - strand at 1676.415 kb on - strand at 1676.415 kb on - strand at 1676.415 kb on - strand at 1676.415 kb on - strand at 1676.453 kb on + strand at 1676.453 kb on + strand at 1676.453 kb on + strand at 1676.453 kb on + strand at 1676.453 kb on + strand at 1676.455 kb on + strand at 1676.455 kb on + strand at 1676.455 kb on + strand at 1676.455 kb on + strand at 1676.455 kb on + strand at 1676.455 kb on + strand at 1676.455 kb on + strand at 1676.455 kb on + strand at 1676.455 kb on + strand at 1676.492 kb on + strand at 1676.510 kb on + strand at 1676.510 kb on + strand at 1676.510 kb on + strand at 1676.510 kb on + strand at 1676.510 kb on + strand at 1676.510 kb on + strand at 1676.510 kb on + strand at 1676.510 kb on + strand at 1676.510 kb on + strand at 1676.510 kb on + strand at 1676.510 kb on + strand at 1676.510 kb on + strand at 1676.510 kb on + strand at 1676.510 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 1,676,044 + -1.3 1,676,045 - +0.1 1,676,092 + -1.2 1,676,093 - +0.9 1,676,126 + +0.2 1,676,126 + +1.4 1,676,126 + -1.3 1,676,126 + +0.5 1,676,126 + +1.7 1,676,126 + -0.0 1,676,126 + +1.2 1,676,126 + -0.6 1,676,126 + -1.1 1,676,126 + +0.6 1,676,126 + -0.7 1,676,126 + +0.8 1,676,126 + -1.0 1,676,126 + -0.3 1,676,126 + -2.1 1,676,126 + -0.4 1,676,127 - +0.9 1,676,127 - -0.1 1,676,127 - +1.2 1,676,127 - -0.2 1,676,127 - +0.7 1,676,127 - +0.4 1,676,127 - -1.5 1,676,127 - +1.7 1,676,127 - -0.5 1,676,127 - -0.3 1,676,127 - -1.3 1,676,127 - -0.6 1,676,127 - +1.9 1,676,127 - +0.2 1,676,127 - -2.6 1,676,127 - -2.9 1,676,271 + LRK53_RS07500 0.68 -0.1 1,676,271 + LRK53_RS07500 0.68 -0.3 1,676,271 + LRK53_RS07500 0.68 -0.7 1,676,272 - LRK53_RS07500 0.69 -2.6 1,676,334 + -1.3 1,676,334 + -2.4 1,676,335 - -1.5 1,676,335 - +1.8 1,676,335 - -1.0 1,676,354 + -0.5 1,676,354 + -1.8 1,676,354 + -2.4 1,676,354 + +0.7 1,676,354 + -0.8 1,676,354 + +0.5 1,676,354 + +1.5 1,676,354 + -0.1 1,676,355 - +0.5 1,676,355 - +1.3 1,676,355 - -1.1 1,676,355 - +0.3 1,676,355 - +0.3 1,676,355 - -0.3 1,676,355 - -0.3 1,676,355 - -0.5 1,676,403 - -1.3 1,676,408 + +1.0 1,676,408 + -2.7 1,676,408 + -1.8 1,676,408 + -0.2 1,676,408 + +0.2 1,676,408 + -0.3 1,676,408 + +0.3 1,676,408 + +0.5 1,676,408 + -0.6 1,676,408 + -1.2 1,676,408 + +0.9 1,676,408 + +0.2 1,676,408 + -0.6 1,676,408 + -0.8 1,676,408 + +0.5 1,676,408 + -0.6 1,676,408 + -1.7 1,676,408 + +1.1 1,676,408 + +0.5 1,676,409 - -0.7 1,676,409 - +1.8 1,676,409 - -0.5 1,676,409 - -0.1 1,676,409 - +1.6 1,676,409 - +1.3 1,676,409 - -0.0 1,676,409 - -1.4 1,676,409 - -1.3 1,676,409 - -1.3 1,676,409 - +1.3 1,676,414 + -0.3 1,676,414 + -0.1 1,676,414 + +0.4 1,676,414 + -0.3 1,676,414 + -0.4 1,676,414 + -0.5 1,676,414 + -2.0 1,676,414 + -0.3 1,676,414 + -0.8 1,676,414 + -1.0 1,676,414 + +0.7 1,676,414 + +0.3 1,676,414 + -0.1 1,676,414 + -1.1 1,676,415 - -1.6 1,676,415 - +0.2 1,676,415 - -1.3 1,676,415 - -0.5 1,676,415 - -0.2 1,676,415 - -1.3 1,676,453 + -0.5 1,676,453 + +0.1 1,676,453 + +1.5 1,676,453 + +0.7 1,676,453 + -2.2 1,676,455 + +0.9 1,676,455 + +0.4 1,676,455 + +0.5 1,676,455 + +0.1 1,676,455 + -0.3 1,676,455 + -0.5 1,676,455 + +1.5 1,676,455 + -1.1 1,676,455 + +0.2 1,676,492 + -1.0 1,676,510 + +1.2 1,676,510 + +0.7 1,676,510 + -0.3 1,676,510 + +1.4 1,676,510 + -1.0 1,676,510 + +0.4 1,676,510 + +0.4 1,676,510 + +0.6 1,676,510 + -0.3 1,676,510 + +0.2 1,676,510 + -0.7 1,676,510 + +1.1 1,676,510 + -1.1 1,676,510 + +0.1
Or see this region's nucleotide sequence