Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS07420

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS07415 and LRK53_RS07420 are separated by 110 nucleotidesLRK53_RS07420 and LRK53_RS07425 are separated by 32 nucleotidesLRK53_RS07425 and LRK53_RS07430 are separated by 96 nucleotides LRK53_RS07415: LRK53_RS07415 - replicative DNA helicase, at 1,659,326 to 1,660,720 _RS07415 LRK53_RS07420: LRK53_RS07420 - DNA repair protein RadA, at 1,660,831 to 1,662,216 _RS07420 LRK53_RS07425: LRK53_RS07425 - cytochrome c biogenesis protein CcsA, at 1,662,249 to 1,663,049 _RS07425 LRK53_RS07430: LRK53_RS07430 - signal recognition particle protein, at 1,663,146 to 1,664,525 _RS07430 Position (kb) 1660 1661 1662 1663Strain fitness (log2 ratio) -2 -1 0 1 2at 1660.808 kb on + strandat 1660.808 kb on + strandat 1660.808 kb on + strandat 1660.808 kb on + strandat 1660.809 kb on - strandat 1660.809 kb on - strandat 1660.809 kb on - strandat 1660.809 kb on - strandat 1660.809 kb on - strandat 1660.809 kb on - strandat 1660.812 kb on + strandat 1660.812 kb on + strandat 1660.812 kb on + strandat 1660.812 kb on + strandat 1660.812 kb on + strandat 1660.812 kb on + strandat 1660.812 kb on + strandat 1660.812 kb on + strandat 1660.812 kb on + strandat 1660.812 kb on + strandat 1660.813 kb on - strandat 1660.813 kb on - strandat 1660.813 kb on - strandat 1660.813 kb on - strandat 1660.813 kb on - strandat 1660.813 kb on - strandat 1660.813 kb on - strandat 1660.813 kb on - strandat 1660.852 kb on + strandat 1660.853 kb on - strandat 1660.853 kb on - strandat 1660.853 kb on - strandat 1660.853 kb on - strandat 1660.853 kb on - strandat 1660.853 kb on - strandat 1661.215 kb on + strand, within LRK53_RS07420at 1661.426 kb on + strand, within LRK53_RS07420at 1661.426 kb on + strand, within LRK53_RS07420at 1661.427 kb on - strand, within LRK53_RS07420at 1661.560 kb on + strand, within LRK53_RS07420at 1661.560 kb on + strand, within LRK53_RS07420at 1661.560 kb on + strand, within LRK53_RS07420at 1661.561 kb on - strand, within LRK53_RS07420at 1661.896 kb on + strand, within LRK53_RS07420at 1662.382 kb on + strand, within LRK53_RS07425at 1662.382 kb on + strand, within LRK53_RS07425at 1662.382 kb on + strand, within LRK53_RS07425at 1662.382 kb on + strand, within LRK53_RS07425at 1662.383 kb on - strand, within LRK53_RS07425at 1662.383 kb on - strand, within LRK53_RS07425at 1662.383 kb on - strand, within LRK53_RS07425at 1662.383 kb on - strand, within LRK53_RS07425at 1662.383 kb on - strand, within LRK53_RS07425at 1662.383 kb on - strand, within LRK53_RS07425at 1663.009 kb on + strandat 1663.010 kb on - strandat 1663.010 kb on - strandat 1663.111 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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1,660,808 + -2.0
1,660,808 + +0.2
1,660,808 + +0.2
1,660,808 + +1.6
1,660,809 - -2.0
1,660,809 - -0.3
1,660,809 - +1.7
1,660,809 - -0.5
1,660,809 - -0.5
1,660,809 - -1.4
1,660,812 + -0.1
1,660,812 + +0.4
1,660,812 + +0.2
1,660,812 + +0.1
1,660,812 + -0.7
1,660,812 + -0.4
1,660,812 + -0.4
1,660,812 + +0.0
1,660,812 + -0.3
1,660,812 + +0.6
1,660,813 - -1.8
1,660,813 - -0.1
1,660,813 - -0.9
1,660,813 - +0.2
1,660,813 - +0.6
1,660,813 - +0.6
1,660,813 - -1.4
1,660,813 - -2.7
1,660,852 + -2.0
1,660,853 - +0.2
1,660,853 - -2.1
1,660,853 - +2.3
1,660,853 - -0.4
1,660,853 - -0.2
1,660,853 - -0.5
1,661,215 + LRK53_RS07420 0.28 -0.5
1,661,426 + LRK53_RS07420 0.43 +0.5
1,661,426 + LRK53_RS07420 0.43 +1.0
1,661,427 - LRK53_RS07420 0.43 +0.3
1,661,560 + LRK53_RS07420 0.53 -1.2
1,661,560 + LRK53_RS07420 0.53 +1.1
1,661,560 + LRK53_RS07420 0.53 +0.5
1,661,561 - LRK53_RS07420 0.53 +1.6
1,661,896 + LRK53_RS07420 0.77 +0.5
1,662,382 + LRK53_RS07425 0.17 -0.9
1,662,382 + LRK53_RS07425 0.17 +0.8
1,662,382 + LRK53_RS07425 0.17 -0.5
1,662,382 + LRK53_RS07425 0.17 -1.8
1,662,383 - LRK53_RS07425 0.17 -0.2
1,662,383 - LRK53_RS07425 0.17 -0.8
1,662,383 - LRK53_RS07425 0.17 -0.7
1,662,383 - LRK53_RS07425 0.17 +0.2
1,662,383 - LRK53_RS07425 0.17 -0.7
1,662,383 - LRK53_RS07425 0.17 -1.2
1,663,009 + -1.3
1,663,010 - -0.1
1,663,010 - +0.6
1,663,111 + -0.3

Or see this region's nucleotide sequence