Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS07390 and LRK53_RS07395 are separated by 151 nucleotides LRK53_RS07395 and LRK53_RS07400 are separated by 284 nucleotides LRK53_RS07400 and LRK53_RS07405 are separated by 14 nucleotides
LRK53_RS07390: LRK53_RS07390 - asparagine--tRNA ligase, at 1,655,588 to 1,656,988
_RS07390
LRK53_RS07395: LRK53_RS07395 - iron-sulfur cluster assembly accessory protein, at 1,657,140 to 1,657,466
_RS07395
LRK53_RS07400: LRK53_RS07400 - 30S ribosomal protein S6, at 1,657,751 to 1,658,173
_RS07400
LRK53_RS07405: LRK53_RS07405 - 30S ribosomal protein S18, at 1,658,188 to 1,658,418
_RS07405
Position (kb)
1657
1658 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1657.079 kb on + strand at 1657.079 kb on + strand at 1657.079 kb on + strand at 1657.079 kb on + strand at 1657.079 kb on + strand at 1657.080 kb on - strand at 1657.080 kb on - strand at 1657.080 kb on - strand at 1657.080 kb on - strand at 1657.080 kb on - strand at 1657.080 kb on - strand at 1657.080 kb on - strand at 1657.084 kb on + strand at 1657.084 kb on + strand at 1657.084 kb on + strand at 1657.084 kb on + strand at 1657.084 kb on + strand at 1657.084 kb on + strand at 1657.084 kb on + strand at 1657.084 kb on + strand at 1657.084 kb on + strand at 1657.084 kb on + strand at 1657.084 kb on + strand at 1657.084 kb on + strand at 1657.084 kb on + strand at 1657.084 kb on + strand at 1657.084 kb on + strand at 1657.084 kb on + strand at 1657.084 kb on + strand at 1657.084 kb on + strand at 1657.084 kb on + strand at 1657.084 kb on + strand at 1657.084 kb on + strand at 1657.084 kb on + strand at 1657.084 kb on + strand at 1657.084 kb on + strand at 1657.084 kb on + strand at 1657.084 kb on + strand at 1657.084 kb on + strand at 1657.084 kb on + strand at 1657.084 kb on + strand at 1657.084 kb on + strand at 1657.084 kb on + strand at 1657.084 kb on + strand at 1657.084 kb on + strand at 1657.085 kb on - strand at 1657.085 kb on - strand at 1657.085 kb on - strand at 1657.085 kb on - strand at 1657.085 kb on - strand at 1657.085 kb on - strand at 1657.085 kb on - strand at 1657.085 kb on - strand at 1657.085 kb on - strand at 1657.085 kb on - strand at 1657.085 kb on - strand at 1657.085 kb on - strand at 1657.085 kb on - strand at 1657.085 kb on - strand at 1657.085 kb on - strand at 1657.085 kb on - strand at 1657.085 kb on - strand at 1657.085 kb on - strand at 1657.085 kb on - strand at 1657.257 kb on + strand, within LRK53_RS07395 at 1657.257 kb on + strand, within LRK53_RS07395 at 1657.257 kb on + strand, within LRK53_RS07395 at 1657.257 kb on + strand, within LRK53_RS07395 at 1657.258 kb on - strand, within LRK53_RS07395 at 1657.258 kb on - strand, within LRK53_RS07395 at 1657.258 kb on - strand, within LRK53_RS07395 at 1657.530 kb on + strand at 1657.530 kb on + strand at 1657.531 kb on - strand at 1657.531 kb on - strand at 1657.531 kb on - strand at 1657.531 kb on - strand at 1658.395 kb on + strand, within LRK53_RS07405 at 1658.395 kb on + strand, within LRK53_RS07405 at 1658.395 kb on + strand, within LRK53_RS07405 at 1658.395 kb on + strand, within LRK53_RS07405 at 1658.395 kb on + strand, within LRK53_RS07405 at 1658.395 kb on + strand, within LRK53_RS07405 at 1658.395 kb on + strand, within LRK53_RS07405 at 1658.396 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 1,657,079 + -0.2 1,657,079 + +1.5 1,657,079 + -1.5 1,657,079 + +0.9 1,657,079 + +0.6 1,657,080 - +0.3 1,657,080 - -0.7 1,657,080 - +0.5 1,657,080 - -0.7 1,657,080 - -0.0 1,657,080 - +1.4 1,657,080 - +0.0 1,657,084 + +0.2 1,657,084 + -0.8 1,657,084 + -1.0 1,657,084 + +0.2 1,657,084 + +0.7 1,657,084 + +1.8 1,657,084 + -1.2 1,657,084 + -1.7 1,657,084 + -0.7 1,657,084 + -1.1 1,657,084 + +1.0 1,657,084 + -1.8 1,657,084 + -2.1 1,657,084 + -1.5 1,657,084 + +0.4 1,657,084 + +0.5 1,657,084 + +1.2 1,657,084 + -0.7 1,657,084 + -0.1 1,657,084 + -0.5 1,657,084 + +0.7 1,657,084 + -1.8 1,657,084 + -1.5 1,657,084 + +1.4 1,657,084 + +0.9 1,657,084 + +0.4 1,657,084 + -1.2 1,657,084 + -1.8 1,657,084 + +0.5 1,657,084 + -0.8 1,657,084 + -0.2 1,657,084 + -0.0 1,657,084 + +0.5 1,657,085 - +0.6 1,657,085 - -0.7 1,657,085 - -0.7 1,657,085 - +0.7 1,657,085 - -1.2 1,657,085 - +0.7 1,657,085 - -2.1 1,657,085 - -0.8 1,657,085 - -2.8 1,657,085 - +0.6 1,657,085 - -1.6 1,657,085 - -1.1 1,657,085 - -0.8 1,657,085 - -2.0 1,657,085 - +1.8 1,657,085 - -1.0 1,657,085 - -1.1 1,657,085 - -1.0 1,657,085 - +0.9 1,657,257 + LRK53_RS07395 0.36 -1.1 1,657,257 + LRK53_RS07395 0.36 -0.8 1,657,257 + LRK53_RS07395 0.36 -1.5 1,657,257 + LRK53_RS07395 0.36 -0.6 1,657,258 - LRK53_RS07395 0.36 -0.9 1,657,258 - LRK53_RS07395 0.36 +0.9 1,657,258 - LRK53_RS07395 0.36 -0.7 1,657,530 + -0.8 1,657,530 + -0.5 1,657,531 - -3.3 1,657,531 - -0.8 1,657,531 - -0.0 1,657,531 - +1.1 1,658,395 + LRK53_RS07405 0.90 +1.0 1,658,395 + LRK53_RS07405 0.90 -0.3 1,658,395 + LRK53_RS07405 0.90 +0.8 1,658,395 + LRK53_RS07405 0.90 +0.4 1,658,395 + LRK53_RS07405 0.90 -0.8 1,658,395 + LRK53_RS07405 0.90 -1.7 1,658,395 + LRK53_RS07405 0.90 +0.9 1,658,396 - -1.0
Or see this region's nucleotide sequence