Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS07395

Experiment: Biofilm; Day2; SGW; pH7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS07390 and LRK53_RS07395 are separated by 151 nucleotidesLRK53_RS07395 and LRK53_RS07400 are separated by 284 nucleotidesLRK53_RS07400 and LRK53_RS07405 are separated by 14 nucleotides LRK53_RS07390: LRK53_RS07390 - asparagine--tRNA ligase, at 1,655,588 to 1,656,988 _RS07390 LRK53_RS07395: LRK53_RS07395 - iron-sulfur cluster assembly accessory protein, at 1,657,140 to 1,657,466 _RS07395 LRK53_RS07400: LRK53_RS07400 - 30S ribosomal protein S6, at 1,657,751 to 1,658,173 _RS07400 LRK53_RS07405: LRK53_RS07405 - 30S ribosomal protein S18, at 1,658,188 to 1,658,418 _RS07405 Position (kb) 1657 1658Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1657.079 kb on + strandat 1657.079 kb on + strandat 1657.079 kb on + strandat 1657.079 kb on + strandat 1657.079 kb on + strandat 1657.080 kb on - strandat 1657.080 kb on - strandat 1657.080 kb on - strandat 1657.080 kb on - strandat 1657.080 kb on - strandat 1657.080 kb on - strandat 1657.080 kb on - strandat 1657.084 kb on + strandat 1657.084 kb on + strandat 1657.084 kb on + strandat 1657.084 kb on + strandat 1657.084 kb on + strandat 1657.084 kb on + strandat 1657.084 kb on + strandat 1657.084 kb on + strandat 1657.084 kb on + strandat 1657.084 kb on + strandat 1657.084 kb on + strandat 1657.084 kb on + strandat 1657.084 kb on + strandat 1657.084 kb on + strandat 1657.084 kb on + strandat 1657.084 kb on + strandat 1657.084 kb on + strandat 1657.084 kb on + strandat 1657.084 kb on + strandat 1657.084 kb on + strandat 1657.084 kb on + strandat 1657.084 kb on + strandat 1657.084 kb on + strandat 1657.084 kb on + strandat 1657.084 kb on + strandat 1657.084 kb on + strandat 1657.084 kb on + strandat 1657.084 kb on + strandat 1657.084 kb on + strandat 1657.084 kb on + strandat 1657.084 kb on + strandat 1657.084 kb on + strandat 1657.084 kb on + strandat 1657.085 kb on - strandat 1657.085 kb on - strandat 1657.085 kb on - strandat 1657.085 kb on - strandat 1657.085 kb on - strandat 1657.085 kb on - strandat 1657.085 kb on - strandat 1657.085 kb on - strandat 1657.085 kb on - strandat 1657.085 kb on - strandat 1657.085 kb on - strandat 1657.085 kb on - strandat 1657.085 kb on - strandat 1657.085 kb on - strandat 1657.085 kb on - strandat 1657.085 kb on - strandat 1657.085 kb on - strandat 1657.085 kb on - strandat 1657.085 kb on - strandat 1657.257 kb on + strand, within LRK53_RS07395at 1657.257 kb on + strand, within LRK53_RS07395at 1657.257 kb on + strand, within LRK53_RS07395at 1657.257 kb on + strand, within LRK53_RS07395at 1657.258 kb on - strand, within LRK53_RS07395at 1657.258 kb on - strand, within LRK53_RS07395at 1657.258 kb on - strand, within LRK53_RS07395at 1657.530 kb on + strandat 1657.530 kb on + strandat 1657.531 kb on - strandat 1657.531 kb on - strandat 1657.531 kb on - strandat 1657.531 kb on - strandat 1658.395 kb on + strand, within LRK53_RS07405at 1658.395 kb on + strand, within LRK53_RS07405at 1658.395 kb on + strand, within LRK53_RS07405at 1658.395 kb on + strand, within LRK53_RS07405at 1658.395 kb on + strand, within LRK53_RS07405at 1658.395 kb on + strand, within LRK53_RS07405at 1658.395 kb on + strand, within LRK53_RS07405at 1658.396 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
remove
1,657,079 + -0.2
1,657,079 + +1.5
1,657,079 + -1.5
1,657,079 + +0.9
1,657,079 + +0.6
1,657,080 - +0.3
1,657,080 - -0.7
1,657,080 - +0.5
1,657,080 - -0.7
1,657,080 - -0.0
1,657,080 - +1.4
1,657,080 - +0.0
1,657,084 + +0.2
1,657,084 + -0.8
1,657,084 + -1.0
1,657,084 + +0.2
1,657,084 + +0.7
1,657,084 + +1.8
1,657,084 + -1.2
1,657,084 + -1.7
1,657,084 + -0.7
1,657,084 + -1.1
1,657,084 + +1.0
1,657,084 + -1.8
1,657,084 + -2.1
1,657,084 + -1.5
1,657,084 + +0.4
1,657,084 + +0.5
1,657,084 + +1.2
1,657,084 + -0.7
1,657,084 + -0.1
1,657,084 + -0.5
1,657,084 + +0.7
1,657,084 + -1.8
1,657,084 + -1.5
1,657,084 + +1.4
1,657,084 + +0.9
1,657,084 + +0.4
1,657,084 + -1.2
1,657,084 + -1.8
1,657,084 + +0.5
1,657,084 + -0.8
1,657,084 + -0.2
1,657,084 + -0.0
1,657,084 + +0.5
1,657,085 - +0.6
1,657,085 - -0.7
1,657,085 - -0.7
1,657,085 - +0.7
1,657,085 - -1.2
1,657,085 - +0.7
1,657,085 - -2.1
1,657,085 - -0.8
1,657,085 - -2.8
1,657,085 - +0.6
1,657,085 - -1.6
1,657,085 - -1.1
1,657,085 - -0.8
1,657,085 - -2.0
1,657,085 - +1.8
1,657,085 - -1.0
1,657,085 - -1.1
1,657,085 - -1.0
1,657,085 - +0.9
1,657,257 + LRK53_RS07395 0.36 -1.1
1,657,257 + LRK53_RS07395 0.36 -0.8
1,657,257 + LRK53_RS07395 0.36 -1.5
1,657,257 + LRK53_RS07395 0.36 -0.6
1,657,258 - LRK53_RS07395 0.36 -0.9
1,657,258 - LRK53_RS07395 0.36 +0.9
1,657,258 - LRK53_RS07395 0.36 -0.7
1,657,530 + -0.8
1,657,530 + -0.5
1,657,531 - -3.3
1,657,531 - -0.8
1,657,531 - -0.0
1,657,531 - +1.1
1,658,395 + LRK53_RS07405 0.90 +1.0
1,658,395 + LRK53_RS07405 0.90 -0.3
1,658,395 + LRK53_RS07405 0.90 +0.8
1,658,395 + LRK53_RS07405 0.90 +0.4
1,658,395 + LRK53_RS07405 0.90 -0.8
1,658,395 + LRK53_RS07405 0.90 -1.7
1,658,395 + LRK53_RS07405 0.90 +0.9
1,658,396 - -1.0

Or see this region's nucleotide sequence