Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS07305 and LRK53_RS07310 are separated by 165 nucleotides LRK53_RS07310 and LRK53_RS07315 are separated by 134 nucleotides
LRK53_RS07305: LRK53_RS07305 - S-formylglutathione hydrolase, at 1,640,888 to 1,641,736
_RS07305
LRK53_RS07310: LRK53_RS07310 - DEAD/DEAH box helicase, at 1,641,902 to 1,643,230
_RS07310
LRK53_RS07315: LRK53_RS07315 - class I SAM-dependent methyltransferase, at 1,643,365 to 1,644,063
_RS07315
Position (kb) 1641
1642
1643
1644 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1640.945 kb on + strand at 1640.945 kb on + strand at 1640.946 kb on - strand at 1640.946 kb on - strand at 1641.035 kb on + strand, within LRK53_RS07305 at 1641.035 kb on + strand, within LRK53_RS07305 at 1641.035 kb on + strand, within LRK53_RS07305 at 1641.035 kb on + strand, within LRK53_RS07305 at 1641.035 kb on + strand, within LRK53_RS07305 at 1641.035 kb on + strand, within LRK53_RS07305 at 1641.035 kb on + strand, within LRK53_RS07305 at 1641.035 kb on + strand, within LRK53_RS07305 at 1641.036 kb on - strand, within LRK53_RS07305 at 1641.036 kb on - strand, within LRK53_RS07305 at 1641.036 kb on - strand, within LRK53_RS07305 at 1641.036 kb on - strand, within LRK53_RS07305 at 1641.036 kb on - strand, within LRK53_RS07305 at 1641.036 kb on - strand, within LRK53_RS07305 at 1641.036 kb on - strand, within LRK53_RS07305 at 1641.036 kb on - strand, within LRK53_RS07305 at 1641.036 kb on - strand, within LRK53_RS07305 at 1641.036 kb on - strand, within LRK53_RS07305 at 1641.206 kb on + strand, within LRK53_RS07305 at 1641.206 kb on + strand, within LRK53_RS07305 at 1641.207 kb on - strand, within LRK53_RS07305 at 1641.207 kb on - strand, within LRK53_RS07305 at 1641.207 kb on - strand, within LRK53_RS07305 at 1641.207 kb on - strand, within LRK53_RS07305 at 1641.257 kb on + strand, within LRK53_RS07305 at 1641.257 kb on + strand, within LRK53_RS07305 at 1641.257 kb on + strand, within LRK53_RS07305 at 1641.257 kb on + strand, within LRK53_RS07305 at 1641.257 kb on + strand, within LRK53_RS07305 at 1641.257 kb on + strand, within LRK53_RS07305 at 1641.257 kb on + strand, within LRK53_RS07305 at 1641.257 kb on + strand, within LRK53_RS07305 at 1641.257 kb on + strand, within LRK53_RS07305 at 1641.257 kb on + strand, within LRK53_RS07305 at 1641.257 kb on + strand, within LRK53_RS07305 at 1641.258 kb on - strand, within LRK53_RS07305 at 1641.258 kb on - strand, within LRK53_RS07305 at 1641.258 kb on - strand, within LRK53_RS07305 at 1641.258 kb on - strand, within LRK53_RS07305 at 1641.258 kb on - strand, within LRK53_RS07305 at 1641.258 kb on - strand, within LRK53_RS07305 at 1641.258 kb on - strand, within LRK53_RS07305 at 1641.258 kb on - strand, within LRK53_RS07305 at 1641.258 kb on - strand, within LRK53_RS07305 at 1641.258 kb on - strand, within LRK53_RS07305 at 1641.258 kb on - strand, within LRK53_RS07305 at 1641.258 kb on - strand, within LRK53_RS07305 at 1641.258 kb on - strand, within LRK53_RS07305 at 1641.461 kb on + strand, within LRK53_RS07305 at 1641.462 kb on - strand, within LRK53_RS07305 at 1641.538 kb on + strand, within LRK53_RS07305 at 1641.538 kb on + strand, within LRK53_RS07305 at 1641.539 kb on - strand, within LRK53_RS07305 at 1641.639 kb on + strand, within LRK53_RS07305 at 1641.640 kb on - strand, within LRK53_RS07305 at 1641.640 kb on - strand, within LRK53_RS07305 at 1641.640 kb on - strand, within LRK53_RS07305 at 1641.640 kb on - strand, within LRK53_RS07305 at 1641.668 kb on + strand at 1641.668 kb on + strand at 1641.668 kb on + strand at 1641.668 kb on + strand at 1641.668 kb on + strand at 1641.668 kb on + strand at 1641.668 kb on + strand at 1641.668 kb on + strand at 1641.668 kb on + strand at 1641.668 kb on + strand at 1641.668 kb on + strand at 1641.668 kb on + strand at 1641.669 kb on - strand at 1641.669 kb on - strand at 1641.669 kb on - strand at 1641.669 kb on - strand at 1641.669 kb on - strand at 1641.669 kb on - strand at 1641.669 kb on - strand at 1641.669 kb on - strand at 1641.669 kb on - strand at 1641.669 kb on - strand at 1641.669 kb on - strand at 1641.669 kb on - strand at 1641.669 kb on - strand at 1641.734 kb on + strand at 1641.734 kb on + strand at 1641.734 kb on + strand at 1641.735 kb on - strand at 1641.735 kb on - strand at 1641.735 kb on - strand at 1641.735 kb on - strand at 1641.735 kb on - strand at 1641.735 kb on - strand at 1641.735 kb on - strand at 1641.761 kb on + strand at 1641.761 kb on + strand at 1641.780 kb on + strand at 1641.781 kb on - strand at 1641.781 kb on - strand at 1642.251 kb on + strand, within LRK53_RS07310 at 1642.251 kb on + strand, within LRK53_RS07310 at 1642.251 kb on + strand, within LRK53_RS07310 at 1642.251 kb on + strand, within LRK53_RS07310 at 1642.251 kb on + strand, within LRK53_RS07310 at 1642.252 kb on - strand, within LRK53_RS07310 at 1642.252 kb on - strand, within LRK53_RS07310 at 1642.252 kb on - strand, within LRK53_RS07310 at 1642.252 kb on - strand, within LRK53_RS07310 at 1642.406 kb on - strand, within LRK53_RS07310 at 1642.788 kb on - strand, within LRK53_RS07310 at 1642.945 kb on - strand, within LRK53_RS07310 at 1643.169 kb on + strand at 1643.176 kb on - strand at 1643.261 kb on + strand at 1643.261 kb on + strand at 1643.262 kb on - strand at 1643.262 kb on - strand at 1643.262 kb on - strand at 1643.262 kb on - strand at 1643.330 kb on + strand at 1643.330 kb on + strand at 1643.330 kb on + strand at 1643.331 kb on - strand at 1643.331 kb on - strand at 1643.331 kb on - strand at 1643.331 kb on - strand at 1643.331 kb on - strand at 1643.332 kb on + strand at 1643.404 kb on - strand at 1643.404 kb on - strand at 1643.404 kb on - strand at 1643.435 kb on + strand, within LRK53_RS07315 at 1643.435 kb on + strand, within LRK53_RS07315 at 1643.435 kb on + strand, within LRK53_RS07315 at 1643.436 kb on - strand, within LRK53_RS07315 at 1643.436 kb on - strand, within LRK53_RS07315 at 1643.436 kb on - strand, within LRK53_RS07315 at 1643.436 kb on - strand, within LRK53_RS07315 at 1643.436 kb on - strand, within LRK53_RS07315 at 1643.436 kb on - strand, within LRK53_RS07315 at 1643.436 kb on - strand, within LRK53_RS07315 at 1643.436 kb on - strand, within LRK53_RS07315 at 1643.436 kb on - strand, within LRK53_RS07315 at 1643.436 kb on - strand, within LRK53_RS07315 at 1643.436 kb on - strand, within LRK53_RS07315 at 1643.444 kb on + strand, within LRK53_RS07315 at 1643.444 kb on + strand, within LRK53_RS07315 at 1643.444 kb on + strand, within LRK53_RS07315 at 1643.444 kb on + strand, within LRK53_RS07315 at 1643.444 kb on + strand, within LRK53_RS07315 at 1643.444 kb on + strand, within LRK53_RS07315 at 1643.444 kb on + strand, within LRK53_RS07315 at 1643.445 kb on - strand, within LRK53_RS07315 at 1643.445 kb on - strand, within LRK53_RS07315 at 1643.445 kb on - strand, within LRK53_RS07315 at 1643.445 kb on - strand, within LRK53_RS07315 at 1643.445 kb on - strand, within LRK53_RS07315 at 1643.445 kb on - strand, within LRK53_RS07315 at 1643.581 kb on + strand, within LRK53_RS07315 at 1643.581 kb on + strand, within LRK53_RS07315 at 1643.705 kb on + strand, within LRK53_RS07315 at 1643.705 kb on + strand, within LRK53_RS07315 at 1643.705 kb on + strand, within LRK53_RS07315 at 1643.705 kb on + strand, within LRK53_RS07315 at 1643.706 kb on - strand, within LRK53_RS07315 at 1643.706 kb on - strand, within LRK53_RS07315 at 1643.706 kb on - strand, within LRK53_RS07315 at 1643.706 kb on - strand, within LRK53_RS07315 at 1643.706 kb on - strand, within LRK53_RS07315 at 1643.706 kb on - strand, within LRK53_RS07315 at 1643.706 kb on - strand, within LRK53_RS07315 at 1643.706 kb on - strand, within LRK53_RS07315 at 1643.706 kb on - strand, within LRK53_RS07315 at 1643.706 kb on - strand, within LRK53_RS07315 at 1643.706 kb on - strand, within LRK53_RS07315 at 1643.706 kb on - strand, within LRK53_RS07315 at 1643.858 kb on + strand, within LRK53_RS07315 at 1643.858 kb on + strand, within LRK53_RS07315 at 1643.858 kb on + strand, within LRK53_RS07315 at 1643.858 kb on + strand, within LRK53_RS07315 at 1643.858 kb on + strand, within LRK53_RS07315 at 1643.859 kb on - strand, within LRK53_RS07315 at 1643.859 kb on - strand, within LRK53_RS07315 at 1643.859 kb on - strand, within LRK53_RS07315 at 1643.859 kb on - strand, within LRK53_RS07315 at 1643.859 kb on - strand, within LRK53_RS07315 at 1643.859 kb on - strand, within LRK53_RS07315 at 1643.888 kb on + strand, within LRK53_RS07315 at 1643.888 kb on + strand, within LRK53_RS07315 at 1643.889 kb on - strand, within LRK53_RS07315 at 1643.889 kb on - strand, within LRK53_RS07315 at 1643.889 kb on - strand, within LRK53_RS07315 at 1643.969 kb on + strand, within LRK53_RS07315 at 1644.026 kb on + strand at 1644.027 kb on - strand at 1644.207 kb on + strand at 1644.207 kb on + strand at 1644.207 kb on + strand at 1644.207 kb on + strand at 1644.208 kb on - strand at 1644.208 kb on - strand at 1644.212 kb on + strand at 1644.212 kb on + strand at 1644.213 kb on - strand at 1644.220 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 1,640,945 + -0.1 1,640,945 + -0.7 1,640,946 - -2.2 1,640,946 - -0.6 1,641,035 + LRK53_RS07305 0.17 -0.3 1,641,035 + LRK53_RS07305 0.17 -0.3 1,641,035 + LRK53_RS07305 0.17 -0.9 1,641,035 + LRK53_RS07305 0.17 -0.8 1,641,035 + LRK53_RS07305 0.17 -0.7 1,641,035 + LRK53_RS07305 0.17 -1.7 1,641,035 + LRK53_RS07305 0.17 +0.3 1,641,035 + LRK53_RS07305 0.17 -0.8 1,641,036 - LRK53_RS07305 0.17 -0.6 1,641,036 - LRK53_RS07305 0.17 +0.2 1,641,036 - LRK53_RS07305 0.17 -1.1 1,641,036 - LRK53_RS07305 0.17 -1.0 1,641,036 - LRK53_RS07305 0.17 +0.7 1,641,036 - LRK53_RS07305 0.17 +0.3 1,641,036 - LRK53_RS07305 0.17 -1.1 1,641,036 - LRK53_RS07305 0.17 -1.5 1,641,036 - LRK53_RS07305 0.17 -0.3 1,641,036 - LRK53_RS07305 0.17 +0.0 1,641,206 + LRK53_RS07305 0.37 +0.1 1,641,206 + LRK53_RS07305 0.37 +0.3 1,641,207 - LRK53_RS07305 0.38 -1.1 1,641,207 - LRK53_RS07305 0.38 -0.3 1,641,207 - LRK53_RS07305 0.38 -1.1 1,641,207 - LRK53_RS07305 0.38 +1.1 1,641,257 + LRK53_RS07305 0.43 +0.3 1,641,257 + LRK53_RS07305 0.43 -1.1 1,641,257 + LRK53_RS07305 0.43 -1.4 1,641,257 + LRK53_RS07305 0.43 -1.1 1,641,257 + LRK53_RS07305 0.43 -1.0 1,641,257 + LRK53_RS07305 0.43 -0.5 1,641,257 + LRK53_RS07305 0.43 +2.3 1,641,257 + LRK53_RS07305 0.43 +0.9 1,641,257 + LRK53_RS07305 0.43 +0.2 1,641,257 + LRK53_RS07305 0.43 +0.9 1,641,257 + LRK53_RS07305 0.43 +0.8 1,641,258 - LRK53_RS07305 0.44 -0.6 1,641,258 - LRK53_RS07305 0.44 -0.5 1,641,258 - LRK53_RS07305 0.44 +0.2 1,641,258 - LRK53_RS07305 0.44 -1.4 1,641,258 - LRK53_RS07305 0.44 -0.2 1,641,258 - LRK53_RS07305 0.44 -0.4 1,641,258 - LRK53_RS07305 0.44 -2.5 1,641,258 - LRK53_RS07305 0.44 +0.0 1,641,258 - LRK53_RS07305 0.44 -0.5 1,641,258 - LRK53_RS07305 0.44 -0.5 1,641,258 - LRK53_RS07305 0.44 +0.8 1,641,258 - LRK53_RS07305 0.44 -2.9 1,641,258 - LRK53_RS07305 0.44 +0.9 1,641,461 + LRK53_RS07305 0.67 -0.8 1,641,462 - LRK53_RS07305 0.68 +0.9 1,641,538 + LRK53_RS07305 0.77 +1.0 1,641,538 + LRK53_RS07305 0.77 -0.4 1,641,539 - LRK53_RS07305 0.77 +0.9 1,641,639 + LRK53_RS07305 0.88 +0.8 1,641,640 - LRK53_RS07305 0.89 -0.3 1,641,640 - LRK53_RS07305 0.89 -1.8 1,641,640 - LRK53_RS07305 0.89 +0.2 1,641,640 - LRK53_RS07305 0.89 +0.2 1,641,668 + +0.9 1,641,668 + +0.5 1,641,668 + -1.3 1,641,668 + +2.0 1,641,668 + -0.6 1,641,668 + +0.3 1,641,668 + -1.3 1,641,668 + +0.3 1,641,668 + -0.4 1,641,668 + -1.1 1,641,668 + -0.4 1,641,668 + -0.7 1,641,669 - -1.1 1,641,669 - +0.4 1,641,669 - -0.0 1,641,669 - -0.5 1,641,669 - +1.3 1,641,669 - +1.2 1,641,669 - +1.3 1,641,669 - -1.5 1,641,669 - -0.5 1,641,669 - +1.5 1,641,669 - -1.3 1,641,669 - +0.5 1,641,669 - +0.6 1,641,734 + -1.3 1,641,734 + -0.2 1,641,734 + -1.5 1,641,735 - +0.1 1,641,735 - -1.5 1,641,735 - -0.6 1,641,735 - -0.7 1,641,735 - -0.3 1,641,735 - -0.8 1,641,735 - -0.0 1,641,761 + -0.6 1,641,761 + -1.0 1,641,780 + +0.2 1,641,781 - -1.6 1,641,781 - +0.6 1,642,251 + LRK53_RS07310 0.26 -0.8 1,642,251 + LRK53_RS07310 0.26 +0.9 1,642,251 + LRK53_RS07310 0.26 -0.1 1,642,251 + LRK53_RS07310 0.26 -0.3 1,642,251 + LRK53_RS07310 0.26 +0.3 1,642,252 - LRK53_RS07310 0.26 +1.9 1,642,252 - LRK53_RS07310 0.26 -1.1 1,642,252 - LRK53_RS07310 0.26 -0.7 1,642,252 - LRK53_RS07310 0.26 +0.2 1,642,406 - LRK53_RS07310 0.38 +0.6 1,642,788 - LRK53_RS07310 0.67 +0.5 1,642,945 - LRK53_RS07310 0.78 +1.2 1,643,169 + +0.7 1,643,176 - -2.1 1,643,261 + -0.4 1,643,261 + -0.3 1,643,262 - +0.8 1,643,262 - +1.5 1,643,262 - -0.5 1,643,262 - +1.7 1,643,330 + +1.8 1,643,330 + +0.6 1,643,330 + -1.0 1,643,331 - -1.4 1,643,331 - +0.9 1,643,331 - +1.1 1,643,331 - +0.7 1,643,331 - +0.9 1,643,332 + +1.2 1,643,404 - -1.2 1,643,404 - -0.5 1,643,404 - -0.7 1,643,435 + LRK53_RS07315 0.10 -0.5 1,643,435 + LRK53_RS07315 0.10 -0.5 1,643,435 + LRK53_RS07315 0.10 +0.2 1,643,436 - LRK53_RS07315 0.10 -1.3 1,643,436 - LRK53_RS07315 0.10 -0.2 1,643,436 - LRK53_RS07315 0.10 +2.2 1,643,436 - LRK53_RS07315 0.10 -2.2 1,643,436 - LRK53_RS07315 0.10 +2.3 1,643,436 - LRK53_RS07315 0.10 -1.5 1,643,436 - LRK53_RS07315 0.10 -1.6 1,643,436 - LRK53_RS07315 0.10 +0.4 1,643,436 - LRK53_RS07315 0.10 -0.6 1,643,436 - LRK53_RS07315 0.10 -0.1 1,643,436 - LRK53_RS07315 0.10 +1.9 1,643,444 + LRK53_RS07315 0.11 -0.8 1,643,444 + LRK53_RS07315 0.11 -0.5 1,643,444 + LRK53_RS07315 0.11 -0.4 1,643,444 + LRK53_RS07315 0.11 +0.7 1,643,444 + LRK53_RS07315 0.11 +0.1 1,643,444 + LRK53_RS07315 0.11 +0.6 1,643,444 + LRK53_RS07315 0.11 -0.7 1,643,445 - LRK53_RS07315 0.11 -0.2 1,643,445 - LRK53_RS07315 0.11 -0.3 1,643,445 - LRK53_RS07315 0.11 +0.6 1,643,445 - LRK53_RS07315 0.11 +0.7 1,643,445 - LRK53_RS07315 0.11 +0.2 1,643,445 - LRK53_RS07315 0.11 +0.2 1,643,581 + LRK53_RS07315 0.31 +1.5 1,643,581 + LRK53_RS07315 0.31 +0.1 1,643,705 + LRK53_RS07315 0.49 -0.3 1,643,705 + LRK53_RS07315 0.49 -0.3 1,643,705 + LRK53_RS07315 0.49 -0.5 1,643,705 + LRK53_RS07315 0.49 -2.4 1,643,706 - LRK53_RS07315 0.49 -1.9 1,643,706 - LRK53_RS07315 0.49 -2.2 1,643,706 - LRK53_RS07315 0.49 -0.4 1,643,706 - LRK53_RS07315 0.49 -0.1 1,643,706 - LRK53_RS07315 0.49 -2.0 1,643,706 - LRK53_RS07315 0.49 -0.0 1,643,706 - LRK53_RS07315 0.49 -0.8 1,643,706 - LRK53_RS07315 0.49 -1.0 1,643,706 - LRK53_RS07315 0.49 -0.3 1,643,706 - LRK53_RS07315 0.49 +0.0 1,643,706 - LRK53_RS07315 0.49 +2.4 1,643,706 - LRK53_RS07315 0.49 -1.0 1,643,858 + LRK53_RS07315 0.71 -1.8 1,643,858 + LRK53_RS07315 0.71 +0.7 1,643,858 + LRK53_RS07315 0.71 -1.2 1,643,858 + LRK53_RS07315 0.71 -1.6 1,643,858 + LRK53_RS07315 0.71 -0.8 1,643,859 - LRK53_RS07315 0.71 +1.1 1,643,859 - LRK53_RS07315 0.71 -0.4 1,643,859 - LRK53_RS07315 0.71 +1.4 1,643,859 - LRK53_RS07315 0.71 -0.3 1,643,859 - LRK53_RS07315 0.71 -1.1 1,643,859 - LRK53_RS07315 0.71 +0.3 1,643,888 + LRK53_RS07315 0.75 +0.7 1,643,888 + LRK53_RS07315 0.75 -0.6 1,643,889 - LRK53_RS07315 0.75 -0.5 1,643,889 - LRK53_RS07315 0.75 -1.3 1,643,889 - LRK53_RS07315 0.75 -0.4 1,643,969 + LRK53_RS07315 0.86 -0.3 1,644,026 + -1.6 1,644,027 - -1.2 1,644,207 + -3.6 1,644,207 + -0.5 1,644,207 + -0.5 1,644,207 + -1.1 1,644,208 - -0.5 1,644,208 - +0.9 1,644,212 + -1.3 1,644,212 + +1.0 1,644,213 - -0.5 1,644,220 + -0.3
Or see this region's nucleotide sequence