Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS07190

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS07180 and LRK53_RS07185 are separated by 57 nucleotidesLRK53_RS07185 and LRK53_RS07190 are separated by 157 nucleotidesLRK53_RS07190 and LRK53_RS07195 are separated by 10 nucleotidesLRK53_RS07195 and LRK53_RS07200 are separated by 127 nucleotidesLRK53_RS07200 and LRK53_RS07205 are separated by 4 nucleotides LRK53_RS07180: LRK53_RS07180 - DNA polymerase III subunit delta, at 1,617,281 to 1,618,291 _RS07180 LRK53_RS07185: LRK53_RS07185 - nicotinate-nucleotide adenylyltransferase, at 1,618,349 to 1,619,005 _RS07185 LRK53_RS07190: LRK53_RS07190 - PepSY domain-containing protein, at 1,619,163 to 1,620,731 _RS07190 LRK53_RS07195: LRK53_RS07195 - hypothetical protein, at 1,620,742 to 1,621,005 _RS07195 LRK53_RS07200: LRK53_RS07200 - hypothetical protein, at 1,621,133 to 1,621,432 _RS07200 LRK53_RS07205: LRK53_RS07205 - TonB-dependent siderophore receptor, at 1,621,437 to 1,623,599 _RS07205 Position (kb) 1619 1620 1621Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1618.341 kb on + strandat 1618.341 kb on + strandat 1618.341 kb on + strandat 1618.342 kb on - strandat 1619.003 kb on + strandat 1619.004 kb on - strandat 1619.004 kb on - strandat 1619.004 kb on - strandat 1619.040 kb on + strandat 1619.040 kb on + strandat 1619.040 kb on + strandat 1619.040 kb on + strandat 1619.041 kb on - strandat 1619.041 kb on - strandat 1619.041 kb on - strandat 1619.041 kb on - strandat 1619.041 kb on - strandat 1619.067 kb on + strandat 1619.067 kb on + strandat 1619.067 kb on + strandat 1619.067 kb on + strandat 1619.067 kb on + strandat 1619.067 kb on + strandat 1619.067 kb on + strandat 1619.067 kb on + strandat 1619.067 kb on + strandat 1619.067 kb on + strandat 1619.067 kb on + strandat 1619.067 kb on + strandat 1619.067 kb on + strandat 1619.067 kb on + strandat 1619.067 kb on + strandat 1619.067 kb on + strandat 1619.067 kb on + strandat 1619.067 kb on + strandat 1619.067 kb on + strandat 1619.067 kb on + strandat 1619.068 kb on - strandat 1619.068 kb on - strandat 1619.068 kb on - strandat 1619.068 kb on - strandat 1619.068 kb on - strandat 1619.068 kb on - strandat 1619.068 kb on - strandat 1619.068 kb on - strandat 1619.068 kb on - strandat 1619.068 kb on - strandat 1619.068 kb on - strandat 1619.068 kb on - strandat 1619.068 kb on - strandat 1619.068 kb on - strandat 1619.068 kb on - strandat 1619.068 kb on - strandat 1619.068 kb on - strandat 1619.068 kb on - strandat 1619.656 kb on + strand, within LRK53_RS07190at 1619.657 kb on - strand, within LRK53_RS07190at 1619.657 kb on - strand, within LRK53_RS07190at 1619.692 kb on + strand, within LRK53_RS07190at 1619.692 kb on + strand, within LRK53_RS07190at 1619.692 kb on + strand, within LRK53_RS07190at 1619.692 kb on + strand, within LRK53_RS07190at 1619.693 kb on - strand, within LRK53_RS07190at 1619.693 kb on - strand, within LRK53_RS07190at 1619.693 kb on - strand, within LRK53_RS07190at 1619.693 kb on - strand, within LRK53_RS07190at 1619.693 kb on - strand, within LRK53_RS07190at 1619.693 kb on - strand, within LRK53_RS07190at 1619.693 kb on - strand, within LRK53_RS07190at 1619.719 kb on + strand, within LRK53_RS07190at 1619.720 kb on - strand, within LRK53_RS07190at 1619.740 kb on + strand, within LRK53_RS07190at 1619.740 kb on + strand, within LRK53_RS07190at 1619.740 kb on + strand, within LRK53_RS07190at 1619.741 kb on - strand, within LRK53_RS07190at 1619.912 kb on - strand, within LRK53_RS07190at 1619.912 kb on - strand, within LRK53_RS07190at 1619.912 kb on - strand, within LRK53_RS07190at 1619.912 kb on - strand, within LRK53_RS07190at 1620.070 kb on + strand, within LRK53_RS07190at 1620.070 kb on + strand, within LRK53_RS07190at 1620.070 kb on + strand, within LRK53_RS07190at 1620.071 kb on - strand, within LRK53_RS07190at 1620.286 kb on + strand, within LRK53_RS07190at 1620.287 kb on - strand, within LRK53_RS07190at 1620.287 kb on - strand, within LRK53_RS07190at 1620.287 kb on - strand, within LRK53_RS07190at 1620.318 kb on - strand, within LRK53_RS07190at 1620.343 kb on + strand, within LRK53_RS07190at 1620.343 kb on + strand, within LRK53_RS07190at 1620.343 kb on + strand, within LRK53_RS07190at 1620.343 kb on + strand, within LRK53_RS07190at 1620.343 kb on + strand, within LRK53_RS07190at 1620.343 kb on + strand, within LRK53_RS07190at 1620.344 kb on - strand, within LRK53_RS07190at 1620.344 kb on - strand, within LRK53_RS07190at 1620.344 kb on - strand, within LRK53_RS07190at 1620.344 kb on - strand, within LRK53_RS07190at 1620.344 kb on - strand, within LRK53_RS07190at 1620.344 kb on - strand, within LRK53_RS07190at 1620.344 kb on - strand, within LRK53_RS07190at 1620.452 kb on - strand, within LRK53_RS07190at 1620.452 kb on - strand, within LRK53_RS07190at 1620.640 kb on + strandat 1620.641 kb on - strandat 1621.109 kb on + strandat 1621.109 kb on + strandat 1621.194 kb on + strand, within LRK53_RS07200at 1621.195 kb on - strand, within LRK53_RS07200at 1621.262 kb on + strand, within LRK53_RS07200at 1621.263 kb on - strand, within LRK53_RS07200at 1621.372 kb on - strand, within LRK53_RS07200at 1621.372 kb on - strand, within LRK53_RS07200at 1621.483 kb on + strandat 1621.483 kb on + strandat 1621.483 kb on + strandat 1621.483 kb on + strandat 1621.483 kb on + strandat 1621.484 kb on - strandat 1621.486 kb on + strandat 1621.486 kb on + strandat 1621.486 kb on + strandat 1621.486 kb on + strandat 1621.486 kb on + strandat 1621.487 kb on - strandat 1621.487 kb on - strandat 1621.487 kb on - strandat 1621.495 kb on + strandat 1621.495 kb on + strandat 1621.518 kb on + strandat 1621.519 kb on + strandat 1621.519 kb on + strandat 1621.519 kb on + strandat 1621.519 kb on + strandat 1621.519 kb on + strandat 1621.519 kb on + strandat 1621.519 kb on + strandat 1621.519 kb on + strandat 1621.519 kb on + strandat 1621.519 kb on + strandat 1621.519 kb on + strandat 1621.520 kb on - strandat 1621.520 kb on - strandat 1621.520 kb on - strandat 1621.520 kb on - strandat 1621.520 kb on - strandat 1621.520 kb on - strandat 1621.520 kb on - strandat 1621.520 kb on - strandat 1621.520 kb on - strandat 1621.520 kb on - strandat 1621.520 kb on - strandat 1621.520 kb on - strandat 1621.520 kb on - strandat 1621.576 kb on + strandat 1621.577 kb on - strandat 1621.603 kb on + strandat 1621.603 kb on + strandat 1621.603 kb on + strandat 1621.603 kb on + strandat 1621.603 kb on + strandat 1621.603 kb on + strandat 1621.604 kb on - strandat 1621.604 kb on - strandat 1621.604 kb on - strandat 1621.604 kb on - strandat 1621.604 kb on - strandat 1621.627 kb on + strandat 1621.627 kb on + strandat 1621.628 kb on - strandat 1621.628 kb on - strandat 1621.628 kb on - strandat 1621.628 kb on - strandat 1621.628 kb on - strandat 1621.628 kb on - strandat 1621.628 kb on - strandat 1621.639 kb on + strandat 1621.655 kb on - strand, within LRK53_RS07205at 1621.708 kb on + strand, within LRK53_RS07205at 1621.708 kb on + strand, within LRK53_RS07205at 1621.709 kb on - strand, within LRK53_RS07205at 1621.709 kb on - strand, within LRK53_RS07205at 1621.709 kb on - strand, within LRK53_RS07205at 1621.709 kb on - strand, within LRK53_RS07205at 1621.709 kb on - strand, within LRK53_RS07205at 1621.709 kb on - strand, within LRK53_RS07205at 1621.709 kb on - strand, within LRK53_RS07205at 1621.709 kb on - strand, within LRK53_RS07205at 1621.709 kb on - strand, within LRK53_RS07205

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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1,618,341 + -0.4
1,618,341 + -0.8
1,618,341 + -0.3
1,618,342 - -0.4
1,619,003 + -0.3
1,619,004 - -1.3
1,619,004 - -2.7
1,619,004 - -0.4
1,619,040 + -2.0
1,619,040 + +1.8
1,619,040 + +0.3
1,619,040 + -2.2
1,619,041 - -0.5
1,619,041 - -1.2
1,619,041 - -0.3
1,619,041 - -0.3
1,619,041 - +0.9
1,619,067 + -2.1
1,619,067 + -0.2
1,619,067 + -0.7
1,619,067 + +1.0
1,619,067 + -1.6
1,619,067 + -1.9
1,619,067 + -1.0
1,619,067 + -1.2
1,619,067 + -1.3
1,619,067 + -0.8
1,619,067 + -0.5
1,619,067 + +1.9
1,619,067 + +0.8
1,619,067 + +0.0
1,619,067 + +0.0
1,619,067 + +0.0
1,619,067 + +1.7
1,619,067 + -3.1
1,619,067 + -1.4
1,619,067 + -0.2
1,619,068 - -1.1
1,619,068 - -0.2
1,619,068 - +0.9
1,619,068 - +1.0
1,619,068 - +0.7
1,619,068 - +0.2
1,619,068 - +1.3
1,619,068 - -2.3
1,619,068 - -1.1
1,619,068 - -0.4
1,619,068 - -2.4
1,619,068 - -0.2
1,619,068 - +0.1
1,619,068 - -0.3
1,619,068 - +1.2
1,619,068 - +0.8
1,619,068 - -1.1
1,619,068 - -2.3
1,619,656 + LRK53_RS07190 0.31 -0.3
1,619,657 - LRK53_RS07190 0.31 -0.3
1,619,657 - LRK53_RS07190 0.31 +0.5
1,619,692 + LRK53_RS07190 0.34 +0.3
1,619,692 + LRK53_RS07190 0.34 -0.7
1,619,692 + LRK53_RS07190 0.34 -1.2
1,619,692 + LRK53_RS07190 0.34 -1.0
1,619,693 - LRK53_RS07190 0.34 -0.2
1,619,693 - LRK53_RS07190 0.34 +1.5
1,619,693 - LRK53_RS07190 0.34 +0.7
1,619,693 - LRK53_RS07190 0.34 +1.2
1,619,693 - LRK53_RS07190 0.34 +0.7
1,619,693 - LRK53_RS07190 0.34 +1.5
1,619,693 - LRK53_RS07190 0.34 -1.1
1,619,719 + LRK53_RS07190 0.35 +0.0
1,619,720 - LRK53_RS07190 0.36 +2.2
1,619,740 + LRK53_RS07190 0.37 -0.3
1,619,740 + LRK53_RS07190 0.37 +1.4
1,619,740 + LRK53_RS07190 0.37 -1.2
1,619,741 - LRK53_RS07190 0.37 +0.4
1,619,912 - LRK53_RS07190 0.48 -0.5
1,619,912 - LRK53_RS07190 0.48 -0.1
1,619,912 - LRK53_RS07190 0.48 +0.2
1,619,912 - LRK53_RS07190 0.48 -0.2
1,620,070 + LRK53_RS07190 0.58 -0.3
1,620,070 + LRK53_RS07190 0.58 +0.6
1,620,070 + LRK53_RS07190 0.58 -0.3
1,620,071 - LRK53_RS07190 0.58 -0.2
1,620,286 + LRK53_RS07190 0.72 -0.3
1,620,287 - LRK53_RS07190 0.72 -1.6
1,620,287 - LRK53_RS07190 0.72 +0.9
1,620,287 - LRK53_RS07190 0.72 -0.2
1,620,318 - LRK53_RS07190 0.74 -0.6
1,620,343 + LRK53_RS07190 0.75 +0.9
1,620,343 + LRK53_RS07190 0.75 -0.6
1,620,343 + LRK53_RS07190 0.75 +0.4
1,620,343 + LRK53_RS07190 0.75 -0.4
1,620,343 + LRK53_RS07190 0.75 -1.0
1,620,343 + LRK53_RS07190 0.75 -1.0
1,620,344 - LRK53_RS07190 0.75 +0.3
1,620,344 - LRK53_RS07190 0.75 +2.0
1,620,344 - LRK53_RS07190 0.75 -0.6
1,620,344 - LRK53_RS07190 0.75 +2.4
1,620,344 - LRK53_RS07190 0.75 +0.1
1,620,344 - LRK53_RS07190 0.75 +0.3
1,620,344 - LRK53_RS07190 0.75 +0.5
1,620,452 - LRK53_RS07190 0.82 +1.5
1,620,452 - LRK53_RS07190 0.82 -0.9
1,620,640 + -2.4
1,620,641 - +0.3
1,621,109 + +0.0
1,621,109 + -0.7
1,621,194 + LRK53_RS07200 0.20 +0.7
1,621,195 - LRK53_RS07200 0.21 +0.7
1,621,262 + LRK53_RS07200 0.43 -0.6
1,621,263 - LRK53_RS07200 0.43 +1.1
1,621,372 - LRK53_RS07200 0.80 -0.6
1,621,372 - LRK53_RS07200 0.80 +0.5
1,621,483 + +1.0
1,621,483 + +0.4
1,621,483 + -0.2
1,621,483 + -2.8
1,621,483 + +0.2
1,621,484 - -0.4
1,621,486 + -1.9
1,621,486 + -0.8
1,621,486 + -0.6
1,621,486 + -1.1
1,621,486 + +1.2
1,621,487 - -1.3
1,621,487 - -0.7
1,621,487 - +1.6
1,621,495 + +0.8
1,621,495 + -2.3
1,621,518 + -1.2
1,621,519 + +0.3
1,621,519 + +0.7
1,621,519 + -0.1
1,621,519 + +1.3
1,621,519 + -1.0
1,621,519 + -0.2
1,621,519 + -0.3
1,621,519 + +0.2
1,621,519 + -2.0
1,621,519 + -1.3
1,621,519 + +1.0
1,621,520 - +0.0
1,621,520 - +0.0
1,621,520 - +0.7
1,621,520 - -0.3
1,621,520 - +0.4
1,621,520 - +0.2
1,621,520 - -0.3
1,621,520 - -1.0
1,621,520 - -0.5
1,621,520 - -1.1
1,621,520 - +0.0
1,621,520 - +2.1
1,621,520 - -0.1
1,621,576 + -0.1
1,621,577 - +1.5
1,621,603 + -0.5
1,621,603 + -0.8
1,621,603 + +1.3
1,621,603 + -0.4
1,621,603 + -1.2
1,621,603 + +1.8
1,621,604 - -1.5
1,621,604 - -0.7
1,621,604 - -1.0
1,621,604 - -0.0
1,621,604 - -0.1
1,621,627 + +0.3
1,621,627 + -0.8
1,621,628 - -1.8
1,621,628 - -0.5
1,621,628 - +0.2
1,621,628 - +0.5
1,621,628 - -0.2
1,621,628 - -1.5
1,621,628 - -0.4
1,621,639 + -1.8
1,621,655 - LRK53_RS07205 0.10 +1.3
1,621,708 + LRK53_RS07205 0.13 +0.1
1,621,708 + LRK53_RS07205 0.13 -2.7
1,621,709 - LRK53_RS07205 0.13 -0.4
1,621,709 - LRK53_RS07205 0.13 -1.7
1,621,709 - LRK53_RS07205 0.13 -0.8
1,621,709 - LRK53_RS07205 0.13 -0.5
1,621,709 - LRK53_RS07205 0.13 -0.6
1,621,709 - LRK53_RS07205 0.13 +0.3
1,621,709 - LRK53_RS07205 0.13 +0.6
1,621,709 - LRK53_RS07205 0.13 +2.5
1,621,709 - LRK53_RS07205 0.13 -0.4

Or see this region's nucleotide sequence