Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS07180 and LRK53_RS07185 are separated by 57 nucleotides LRK53_RS07185 and LRK53_RS07190 are separated by 157 nucleotides LRK53_RS07190 and LRK53_RS07195 are separated by 10 nucleotides LRK53_RS07195 and LRK53_RS07200 are separated by 127 nucleotides LRK53_RS07200 and LRK53_RS07205 are separated by 4 nucleotides
LRK53_RS07180: LRK53_RS07180 - DNA polymerase III subunit delta, at 1,617,281 to 1,618,291
_RS07180
LRK53_RS07185: LRK53_RS07185 - nicotinate-nucleotide adenylyltransferase, at 1,618,349 to 1,619,005
_RS07185
LRK53_RS07190: LRK53_RS07190 - PepSY domain-containing protein, at 1,619,163 to 1,620,731
_RS07190
LRK53_RS07195: LRK53_RS07195 - hypothetical protein, at 1,620,742 to 1,621,005
_RS07195
LRK53_RS07200: LRK53_RS07200 - hypothetical protein, at 1,621,133 to 1,621,432
_RS07200
LRK53_RS07205: LRK53_RS07205 - TonB-dependent siderophore receptor, at 1,621,437 to 1,623,599
_RS07205
Position (kb)
1619
1620
1621 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1618.341 kb on + strand at 1618.341 kb on + strand at 1618.341 kb on + strand at 1618.342 kb on - strand at 1619.003 kb on + strand at 1619.004 kb on - strand at 1619.004 kb on - strand at 1619.004 kb on - strand at 1619.040 kb on + strand at 1619.040 kb on + strand at 1619.040 kb on + strand at 1619.040 kb on + strand at 1619.041 kb on - strand at 1619.041 kb on - strand at 1619.041 kb on - strand at 1619.041 kb on - strand at 1619.041 kb on - strand at 1619.067 kb on + strand at 1619.067 kb on + strand at 1619.067 kb on + strand at 1619.067 kb on + strand at 1619.067 kb on + strand at 1619.067 kb on + strand at 1619.067 kb on + strand at 1619.067 kb on + strand at 1619.067 kb on + strand at 1619.067 kb on + strand at 1619.067 kb on + strand at 1619.067 kb on + strand at 1619.067 kb on + strand at 1619.067 kb on + strand at 1619.067 kb on + strand at 1619.067 kb on + strand at 1619.067 kb on + strand at 1619.067 kb on + strand at 1619.067 kb on + strand at 1619.067 kb on + strand at 1619.068 kb on - strand at 1619.068 kb on - strand at 1619.068 kb on - strand at 1619.068 kb on - strand at 1619.068 kb on - strand at 1619.068 kb on - strand at 1619.068 kb on - strand at 1619.068 kb on - strand at 1619.068 kb on - strand at 1619.068 kb on - strand at 1619.068 kb on - strand at 1619.068 kb on - strand at 1619.068 kb on - strand at 1619.068 kb on - strand at 1619.068 kb on - strand at 1619.068 kb on - strand at 1619.068 kb on - strand at 1619.068 kb on - strand at 1619.656 kb on + strand, within LRK53_RS07190 at 1619.657 kb on - strand, within LRK53_RS07190 at 1619.657 kb on - strand, within LRK53_RS07190 at 1619.692 kb on + strand, within LRK53_RS07190 at 1619.692 kb on + strand, within LRK53_RS07190 at 1619.692 kb on + strand, within LRK53_RS07190 at 1619.692 kb on + strand, within LRK53_RS07190 at 1619.693 kb on - strand, within LRK53_RS07190 at 1619.693 kb on - strand, within LRK53_RS07190 at 1619.693 kb on - strand, within LRK53_RS07190 at 1619.693 kb on - strand, within LRK53_RS07190 at 1619.693 kb on - strand, within LRK53_RS07190 at 1619.693 kb on - strand, within LRK53_RS07190 at 1619.693 kb on - strand, within LRK53_RS07190 at 1619.719 kb on + strand, within LRK53_RS07190 at 1619.720 kb on - strand, within LRK53_RS07190 at 1619.740 kb on + strand, within LRK53_RS07190 at 1619.740 kb on + strand, within LRK53_RS07190 at 1619.740 kb on + strand, within LRK53_RS07190 at 1619.741 kb on - strand, within LRK53_RS07190 at 1619.912 kb on - strand, within LRK53_RS07190 at 1619.912 kb on - strand, within LRK53_RS07190 at 1619.912 kb on - strand, within LRK53_RS07190 at 1619.912 kb on - strand, within LRK53_RS07190 at 1620.070 kb on + strand, within LRK53_RS07190 at 1620.070 kb on + strand, within LRK53_RS07190 at 1620.070 kb on + strand, within LRK53_RS07190 at 1620.071 kb on - strand, within LRK53_RS07190 at 1620.286 kb on + strand, within LRK53_RS07190 at 1620.287 kb on - strand, within LRK53_RS07190 at 1620.287 kb on - strand, within LRK53_RS07190 at 1620.287 kb on - strand, within LRK53_RS07190 at 1620.318 kb on - strand, within LRK53_RS07190 at 1620.343 kb on + strand, within LRK53_RS07190 at 1620.343 kb on + strand, within LRK53_RS07190 at 1620.343 kb on + strand, within LRK53_RS07190 at 1620.343 kb on + strand, within LRK53_RS07190 at 1620.343 kb on + strand, within LRK53_RS07190 at 1620.343 kb on + strand, within LRK53_RS07190 at 1620.344 kb on - strand, within LRK53_RS07190 at 1620.344 kb on - strand, within LRK53_RS07190 at 1620.344 kb on - strand, within LRK53_RS07190 at 1620.344 kb on - strand, within LRK53_RS07190 at 1620.344 kb on - strand, within LRK53_RS07190 at 1620.344 kb on - strand, within LRK53_RS07190 at 1620.344 kb on - strand, within LRK53_RS07190 at 1620.452 kb on - strand, within LRK53_RS07190 at 1620.452 kb on - strand, within LRK53_RS07190 at 1620.640 kb on + strand at 1620.641 kb on - strand at 1621.109 kb on + strand at 1621.109 kb on + strand at 1621.194 kb on + strand, within LRK53_RS07200 at 1621.195 kb on - strand, within LRK53_RS07200 at 1621.262 kb on + strand, within LRK53_RS07200 at 1621.263 kb on - strand, within LRK53_RS07200 at 1621.372 kb on - strand, within LRK53_RS07200 at 1621.372 kb on - strand, within LRK53_RS07200 at 1621.483 kb on + strand at 1621.483 kb on + strand at 1621.483 kb on + strand at 1621.483 kb on + strand at 1621.483 kb on + strand at 1621.484 kb on - strand at 1621.486 kb on + strand at 1621.486 kb on + strand at 1621.486 kb on + strand at 1621.486 kb on + strand at 1621.486 kb on + strand at 1621.487 kb on - strand at 1621.487 kb on - strand at 1621.487 kb on - strand at 1621.495 kb on + strand at 1621.495 kb on + strand at 1621.518 kb on + strand at 1621.519 kb on + strand at 1621.519 kb on + strand at 1621.519 kb on + strand at 1621.519 kb on + strand at 1621.519 kb on + strand at 1621.519 kb on + strand at 1621.519 kb on + strand at 1621.519 kb on + strand at 1621.519 kb on + strand at 1621.519 kb on + strand at 1621.519 kb on + strand at 1621.520 kb on - strand at 1621.520 kb on - strand at 1621.520 kb on - strand at 1621.520 kb on - strand at 1621.520 kb on - strand at 1621.520 kb on - strand at 1621.520 kb on - strand at 1621.520 kb on - strand at 1621.520 kb on - strand at 1621.520 kb on - strand at 1621.520 kb on - strand at 1621.520 kb on - strand at 1621.520 kb on - strand at 1621.576 kb on + strand at 1621.577 kb on - strand at 1621.603 kb on + strand at 1621.603 kb on + strand at 1621.603 kb on + strand at 1621.603 kb on + strand at 1621.603 kb on + strand at 1621.603 kb on + strand at 1621.604 kb on - strand at 1621.604 kb on - strand at 1621.604 kb on - strand at 1621.604 kb on - strand at 1621.604 kb on - strand at 1621.627 kb on + strand at 1621.627 kb on + strand at 1621.628 kb on - strand at 1621.628 kb on - strand at 1621.628 kb on - strand at 1621.628 kb on - strand at 1621.628 kb on - strand at 1621.628 kb on - strand at 1621.628 kb on - strand at 1621.639 kb on + strand at 1621.655 kb on - strand, within LRK53_RS07205 at 1621.708 kb on + strand, within LRK53_RS07205 at 1621.708 kb on + strand, within LRK53_RS07205 at 1621.709 kb on - strand, within LRK53_RS07205 at 1621.709 kb on - strand, within LRK53_RS07205 at 1621.709 kb on - strand, within LRK53_RS07205 at 1621.709 kb on - strand, within LRK53_RS07205 at 1621.709 kb on - strand, within LRK53_RS07205 at 1621.709 kb on - strand, within LRK53_RS07205 at 1621.709 kb on - strand, within LRK53_RS07205 at 1621.709 kb on - strand, within LRK53_RS07205 at 1621.709 kb on - strand, within LRK53_RS07205
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 1,618,341 + -0.4 1,618,341 + -0.8 1,618,341 + -0.3 1,618,342 - -0.4 1,619,003 + -0.3 1,619,004 - -1.3 1,619,004 - -2.7 1,619,004 - -0.4 1,619,040 + -2.0 1,619,040 + +1.8 1,619,040 + +0.3 1,619,040 + -2.2 1,619,041 - -0.5 1,619,041 - -1.2 1,619,041 - -0.3 1,619,041 - -0.3 1,619,041 - +0.9 1,619,067 + -2.1 1,619,067 + -0.2 1,619,067 + -0.7 1,619,067 + +1.0 1,619,067 + -1.6 1,619,067 + -1.9 1,619,067 + -1.0 1,619,067 + -1.2 1,619,067 + -1.3 1,619,067 + -0.8 1,619,067 + -0.5 1,619,067 + +1.9 1,619,067 + +0.8 1,619,067 + +0.0 1,619,067 + +0.0 1,619,067 + +0.0 1,619,067 + +1.7 1,619,067 + -3.1 1,619,067 + -1.4 1,619,067 + -0.2 1,619,068 - -1.1 1,619,068 - -0.2 1,619,068 - +0.9 1,619,068 - +1.0 1,619,068 - +0.7 1,619,068 - +0.2 1,619,068 - +1.3 1,619,068 - -2.3 1,619,068 - -1.1 1,619,068 - -0.4 1,619,068 - -2.4 1,619,068 - -0.2 1,619,068 - +0.1 1,619,068 - -0.3 1,619,068 - +1.2 1,619,068 - +0.8 1,619,068 - -1.1 1,619,068 - -2.3 1,619,656 + LRK53_RS07190 0.31 -0.3 1,619,657 - LRK53_RS07190 0.31 -0.3 1,619,657 - LRK53_RS07190 0.31 +0.5 1,619,692 + LRK53_RS07190 0.34 +0.3 1,619,692 + LRK53_RS07190 0.34 -0.7 1,619,692 + LRK53_RS07190 0.34 -1.2 1,619,692 + LRK53_RS07190 0.34 -1.0 1,619,693 - LRK53_RS07190 0.34 -0.2 1,619,693 - LRK53_RS07190 0.34 +1.5 1,619,693 - LRK53_RS07190 0.34 +0.7 1,619,693 - LRK53_RS07190 0.34 +1.2 1,619,693 - LRK53_RS07190 0.34 +0.7 1,619,693 - LRK53_RS07190 0.34 +1.5 1,619,693 - LRK53_RS07190 0.34 -1.1 1,619,719 + LRK53_RS07190 0.35 +0.0 1,619,720 - LRK53_RS07190 0.36 +2.2 1,619,740 + LRK53_RS07190 0.37 -0.3 1,619,740 + LRK53_RS07190 0.37 +1.4 1,619,740 + LRK53_RS07190 0.37 -1.2 1,619,741 - LRK53_RS07190 0.37 +0.4 1,619,912 - LRK53_RS07190 0.48 -0.5 1,619,912 - LRK53_RS07190 0.48 -0.1 1,619,912 - LRK53_RS07190 0.48 +0.2 1,619,912 - LRK53_RS07190 0.48 -0.2 1,620,070 + LRK53_RS07190 0.58 -0.3 1,620,070 + LRK53_RS07190 0.58 +0.6 1,620,070 + LRK53_RS07190 0.58 -0.3 1,620,071 - LRK53_RS07190 0.58 -0.2 1,620,286 + LRK53_RS07190 0.72 -0.3 1,620,287 - LRK53_RS07190 0.72 -1.6 1,620,287 - LRK53_RS07190 0.72 +0.9 1,620,287 - LRK53_RS07190 0.72 -0.2 1,620,318 - LRK53_RS07190 0.74 -0.6 1,620,343 + LRK53_RS07190 0.75 +0.9 1,620,343 + LRK53_RS07190 0.75 -0.6 1,620,343 + LRK53_RS07190 0.75 +0.4 1,620,343 + LRK53_RS07190 0.75 -0.4 1,620,343 + LRK53_RS07190 0.75 -1.0 1,620,343 + LRK53_RS07190 0.75 -1.0 1,620,344 - LRK53_RS07190 0.75 +0.3 1,620,344 - LRK53_RS07190 0.75 +2.0 1,620,344 - LRK53_RS07190 0.75 -0.6 1,620,344 - LRK53_RS07190 0.75 +2.4 1,620,344 - LRK53_RS07190 0.75 +0.1 1,620,344 - LRK53_RS07190 0.75 +0.3 1,620,344 - LRK53_RS07190 0.75 +0.5 1,620,452 - LRK53_RS07190 0.82 +1.5 1,620,452 - LRK53_RS07190 0.82 -0.9 1,620,640 + -2.4 1,620,641 - +0.3 1,621,109 + +0.0 1,621,109 + -0.7 1,621,194 + LRK53_RS07200 0.20 +0.7 1,621,195 - LRK53_RS07200 0.21 +0.7 1,621,262 + LRK53_RS07200 0.43 -0.6 1,621,263 - LRK53_RS07200 0.43 +1.1 1,621,372 - LRK53_RS07200 0.80 -0.6 1,621,372 - LRK53_RS07200 0.80 +0.5 1,621,483 + +1.0 1,621,483 + +0.4 1,621,483 + -0.2 1,621,483 + -2.8 1,621,483 + +0.2 1,621,484 - -0.4 1,621,486 + -1.9 1,621,486 + -0.8 1,621,486 + -0.6 1,621,486 + -1.1 1,621,486 + +1.2 1,621,487 - -1.3 1,621,487 - -0.7 1,621,487 - +1.6 1,621,495 + +0.8 1,621,495 + -2.3 1,621,518 + -1.2 1,621,519 + +0.3 1,621,519 + +0.7 1,621,519 + -0.1 1,621,519 + +1.3 1,621,519 + -1.0 1,621,519 + -0.2 1,621,519 + -0.3 1,621,519 + +0.2 1,621,519 + -2.0 1,621,519 + -1.3 1,621,519 + +1.0 1,621,520 - +0.0 1,621,520 - +0.0 1,621,520 - +0.7 1,621,520 - -0.3 1,621,520 - +0.4 1,621,520 - +0.2 1,621,520 - -0.3 1,621,520 - -1.0 1,621,520 - -0.5 1,621,520 - -1.1 1,621,520 - +0.0 1,621,520 - +2.1 1,621,520 - -0.1 1,621,576 + -0.1 1,621,577 - +1.5 1,621,603 + -0.5 1,621,603 + -0.8 1,621,603 + +1.3 1,621,603 + -0.4 1,621,603 + -1.2 1,621,603 + +1.8 1,621,604 - -1.5 1,621,604 - -0.7 1,621,604 - -1.0 1,621,604 - -0.0 1,621,604 - -0.1 1,621,627 + +0.3 1,621,627 + -0.8 1,621,628 - -1.8 1,621,628 - -0.5 1,621,628 - +0.2 1,621,628 - +0.5 1,621,628 - -0.2 1,621,628 - -1.5 1,621,628 - -0.4 1,621,639 + -1.8 1,621,655 - LRK53_RS07205 0.10 +1.3 1,621,708 + LRK53_RS07205 0.13 +0.1 1,621,708 + LRK53_RS07205 0.13 -2.7 1,621,709 - LRK53_RS07205 0.13 -0.4 1,621,709 - LRK53_RS07205 0.13 -1.7 1,621,709 - LRK53_RS07205 0.13 -0.8 1,621,709 - LRK53_RS07205 0.13 -0.5 1,621,709 - LRK53_RS07205 0.13 -0.6 1,621,709 - LRK53_RS07205 0.13 +0.3 1,621,709 - LRK53_RS07205 0.13 +0.6 1,621,709 - LRK53_RS07205 0.13 +2.5 1,621,709 - LRK53_RS07205 0.13 -0.4
Or see this region's nucleotide sequence