Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS06865 and LRK53_RS06870 are separated by 138 nucleotides LRK53_RS06870 and LRK53_RS06875 are separated by 5 nucleotides
LRK53_RS06865: LRK53_RS06865 - phosphotransferase, at 1,550,171 to 1,551,181
_RS06865
LRK53_RS06870: LRK53_RS06870 - SUF system Fe-S cluster assembly regulator, at 1,551,320 to 1,551,808
_RS06870
LRK53_RS06875: LRK53_RS06875 - Fe-S cluster assembly protein SufB, at 1,551,814 to 1,553,283
_RS06875
Position (kb)
1551
1552 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1550.334 kb on + strand, within LRK53_RS06865 at 1550.334 kb on + strand, within LRK53_RS06865 at 1550.335 kb on - strand, within LRK53_RS06865 at 1550.354 kb on + strand, within LRK53_RS06865 at 1550.354 kb on + strand, within LRK53_RS06865 at 1550.354 kb on + strand, within LRK53_RS06865 at 1550.354 kb on + strand, within LRK53_RS06865 at 1550.354 kb on + strand, within LRK53_RS06865 at 1550.355 kb on - strand, within LRK53_RS06865 at 1550.355 kb on - strand, within LRK53_RS06865 at 1550.355 kb on - strand, within LRK53_RS06865 at 1550.355 kb on - strand, within LRK53_RS06865 at 1550.355 kb on - strand, within LRK53_RS06865 at 1550.496 kb on + strand, within LRK53_RS06865 at 1550.496 kb on + strand, within LRK53_RS06865 at 1550.496 kb on + strand, within LRK53_RS06865 at 1550.496 kb on + strand, within LRK53_RS06865 at 1550.496 kb on + strand, within LRK53_RS06865 at 1550.496 kb on + strand, within LRK53_RS06865 at 1550.496 kb on + strand, within LRK53_RS06865 at 1550.496 kb on + strand, within LRK53_RS06865 at 1550.497 kb on - strand, within LRK53_RS06865 at 1550.497 kb on - strand, within LRK53_RS06865 at 1550.497 kb on - strand, within LRK53_RS06865 at 1550.497 kb on - strand, within LRK53_RS06865 at 1550.497 kb on - strand, within LRK53_RS06865 at 1550.497 kb on - strand, within LRK53_RS06865 at 1550.526 kb on + strand, within LRK53_RS06865 at 1550.526 kb on + strand, within LRK53_RS06865 at 1550.526 kb on + strand, within LRK53_RS06865 at 1550.526 kb on + strand, within LRK53_RS06865 at 1550.526 kb on + strand, within LRK53_RS06865 at 1550.527 kb on - strand, within LRK53_RS06865 at 1550.527 kb on - strand, within LRK53_RS06865 at 1550.527 kb on - strand, within LRK53_RS06865 at 1550.527 kb on - strand, within LRK53_RS06865 at 1550.845 kb on - strand, within LRK53_RS06865 at 1550.845 kb on - strand, within LRK53_RS06865 at 1550.883 kb on + strand, within LRK53_RS06865 at 1550.883 kb on + strand, within LRK53_RS06865 at 1550.883 kb on + strand, within LRK53_RS06865 at 1550.884 kb on - strand, within LRK53_RS06865 at 1550.957 kb on + strand, within LRK53_RS06865 at 1550.958 kb on - strand, within LRK53_RS06865 at 1550.958 kb on - strand, within LRK53_RS06865 at 1550.958 kb on - strand, within LRK53_RS06865 at 1551.062 kb on - strand, within LRK53_RS06865 at 1551.069 kb on + strand, within LRK53_RS06865 at 1551.069 kb on + strand, within LRK53_RS06865 at 1551.070 kb on - strand, within LRK53_RS06865 at 1551.070 kb on - strand, within LRK53_RS06865 at 1551.070 kb on - strand, within LRK53_RS06865 at 1551.070 kb on - strand, within LRK53_RS06865 at 1551.214 kb on - strand at 1551.214 kb on - strand at 1551.347 kb on + strand at 1551.347 kb on + strand at 1551.348 kb on - strand at 1551.370 kb on + strand, within LRK53_RS06870 at 1551.371 kb on - strand, within LRK53_RS06870
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 1,550,334 + LRK53_RS06865 0.16 -1.6 1,550,334 + LRK53_RS06865 0.16 -1.4 1,550,335 - LRK53_RS06865 0.16 -2.5 1,550,354 + LRK53_RS06865 0.18 +0.2 1,550,354 + LRK53_RS06865 0.18 -0.7 1,550,354 + LRK53_RS06865 0.18 -1.9 1,550,354 + LRK53_RS06865 0.18 +0.0 1,550,354 + LRK53_RS06865 0.18 -1.2 1,550,355 - LRK53_RS06865 0.18 +0.2 1,550,355 - LRK53_RS06865 0.18 +0.7 1,550,355 - LRK53_RS06865 0.18 -1.8 1,550,355 - LRK53_RS06865 0.18 +1.1 1,550,355 - LRK53_RS06865 0.18 +0.2 1,550,496 + LRK53_RS06865 0.32 -0.6 1,550,496 + LRK53_RS06865 0.32 -2.0 1,550,496 + LRK53_RS06865 0.32 -0.5 1,550,496 + LRK53_RS06865 0.32 +0.9 1,550,496 + LRK53_RS06865 0.32 -0.5 1,550,496 + LRK53_RS06865 0.32 -0.6 1,550,496 + LRK53_RS06865 0.32 +2.0 1,550,496 + LRK53_RS06865 0.32 +1.4 1,550,497 - LRK53_RS06865 0.32 -0.1 1,550,497 - LRK53_RS06865 0.32 -0.1 1,550,497 - LRK53_RS06865 0.32 -1.5 1,550,497 - LRK53_RS06865 0.32 -1.0 1,550,497 - LRK53_RS06865 0.32 -0.5 1,550,497 - LRK53_RS06865 0.32 +0.2 1,550,526 + LRK53_RS06865 0.35 -0.8 1,550,526 + LRK53_RS06865 0.35 -2.8 1,550,526 + LRK53_RS06865 0.35 +2.5 1,550,526 + LRK53_RS06865 0.35 -0.8 1,550,526 + LRK53_RS06865 0.35 +0.2 1,550,527 - LRK53_RS06865 0.35 -2.1 1,550,527 - LRK53_RS06865 0.35 -1.2 1,550,527 - LRK53_RS06865 0.35 -0.3 1,550,527 - LRK53_RS06865 0.35 -1.8 1,550,845 - LRK53_RS06865 0.67 +1.4 1,550,845 - LRK53_RS06865 0.67 -2.1 1,550,883 + LRK53_RS06865 0.70 +1.7 1,550,883 + LRK53_RS06865 0.70 -1.1 1,550,883 + LRK53_RS06865 0.70 -0.1 1,550,884 - LRK53_RS06865 0.71 -2.0 1,550,957 + LRK53_RS06865 0.78 -1.7 1,550,958 - LRK53_RS06865 0.78 -2.0 1,550,958 - LRK53_RS06865 0.78 -0.5 1,550,958 - LRK53_RS06865 0.78 -0.5 1,551,062 - LRK53_RS06865 0.88 -0.3 1,551,069 + LRK53_RS06865 0.89 -2.8 1,551,069 + LRK53_RS06865 0.89 -0.8 1,551,070 - LRK53_RS06865 0.89 -1.6 1,551,070 - LRK53_RS06865 0.89 +0.4 1,551,070 - LRK53_RS06865 0.89 -0.1 1,551,070 - LRK53_RS06865 0.89 -0.5 1,551,214 - -0.8 1,551,214 - -0.3 1,551,347 + -2.6 1,551,347 + -0.9 1,551,348 - -0.1 1,551,370 + LRK53_RS06870 0.10 -0.7 1,551,371 - LRK53_RS06870 0.10 +0.4
Or see this region's nucleotide sequence