Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS06855 and LRK53_RS06860 are separated by 293 nucleotides LRK53_RS06860 and LRK53_RS06865 overlap by 4 nucleotides
LRK53_RS06855: LRK53_RS06855 - protein translocase subunit SecF, at 1,548,202 to 1,549,164
_RS06855
LRK53_RS06860: LRK53_RS06860 - nucleotidyltransferase family protein, at 1,549,458 to 1,550,174
_RS06860
LRK53_RS06865: LRK53_RS06865 - phosphotransferase, at 1,550,171 to 1,551,181
_RS06865
Position (kb)
1549
1550
1551 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1549.174 kb on - strand at 1549.197 kb on + strand at 1549.197 kb on + strand at 1549.197 kb on + strand at 1549.198 kb on - strand at 1549.198 kb on - strand at 1549.198 kb on - strand at 1549.295 kb on + strand at 1549.295 kb on + strand at 1549.295 kb on + strand at 1549.295 kb on + strand at 1549.295 kb on + strand at 1549.295 kb on + strand at 1549.295 kb on + strand at 1549.296 kb on - strand at 1549.296 kb on - strand at 1549.296 kb on - strand at 1549.296 kb on - strand at 1549.296 kb on - strand at 1549.296 kb on - strand at 1549.459 kb on + strand at 1549.459 kb on + strand at 1549.459 kb on + strand at 1549.459 kb on + strand at 1549.693 kb on + strand, within LRK53_RS06860 at 1549.693 kb on + strand, within LRK53_RS06860 at 1549.694 kb on - strand, within LRK53_RS06860 at 1549.694 kb on - strand, within LRK53_RS06860 at 1549.694 kb on - strand, within LRK53_RS06860 at 1549.694 kb on - strand, within LRK53_RS06860 at 1550.029 kb on + strand, within LRK53_RS06860 at 1550.029 kb on + strand, within LRK53_RS06860 at 1550.029 kb on + strand, within LRK53_RS06860 at 1550.029 kb on + strand, within LRK53_RS06860 at 1550.029 kb on + strand, within LRK53_RS06860 at 1550.030 kb on - strand, within LRK53_RS06860 at 1550.030 kb on - strand, within LRK53_RS06860 at 1550.271 kb on + strand at 1550.272 kb on - strand, within LRK53_RS06865 at 1550.272 kb on - strand, within LRK53_RS06865 at 1550.277 kb on + strand, within LRK53_RS06865 at 1550.277 kb on + strand, within LRK53_RS06865 at 1550.301 kb on + strand, within LRK53_RS06865 at 1550.302 kb on - strand, within LRK53_RS06865 at 1550.334 kb on + strand, within LRK53_RS06865 at 1550.334 kb on + strand, within LRK53_RS06865 at 1550.335 kb on - strand, within LRK53_RS06865 at 1550.354 kb on + strand, within LRK53_RS06865 at 1550.354 kb on + strand, within LRK53_RS06865 at 1550.354 kb on + strand, within LRK53_RS06865 at 1550.354 kb on + strand, within LRK53_RS06865 at 1550.354 kb on + strand, within LRK53_RS06865 at 1550.355 kb on - strand, within LRK53_RS06865 at 1550.355 kb on - strand, within LRK53_RS06865 at 1550.355 kb on - strand, within LRK53_RS06865 at 1550.355 kb on - strand, within LRK53_RS06865 at 1550.355 kb on - strand, within LRK53_RS06865 at 1550.496 kb on + strand, within LRK53_RS06865 at 1550.496 kb on + strand, within LRK53_RS06865 at 1550.496 kb on + strand, within LRK53_RS06865 at 1550.496 kb on + strand, within LRK53_RS06865 at 1550.496 kb on + strand, within LRK53_RS06865 at 1550.496 kb on + strand, within LRK53_RS06865 at 1550.496 kb on + strand, within LRK53_RS06865 at 1550.496 kb on + strand, within LRK53_RS06865 at 1550.497 kb on - strand, within LRK53_RS06865 at 1550.497 kb on - strand, within LRK53_RS06865 at 1550.497 kb on - strand, within LRK53_RS06865 at 1550.497 kb on - strand, within LRK53_RS06865 at 1550.497 kb on - strand, within LRK53_RS06865 at 1550.497 kb on - strand, within LRK53_RS06865 at 1550.526 kb on + strand, within LRK53_RS06865 at 1550.526 kb on + strand, within LRK53_RS06865 at 1550.526 kb on + strand, within LRK53_RS06865 at 1550.526 kb on + strand, within LRK53_RS06865 at 1550.526 kb on + strand, within LRK53_RS06865 at 1550.527 kb on - strand, within LRK53_RS06865 at 1550.527 kb on - strand, within LRK53_RS06865 at 1550.527 kb on - strand, within LRK53_RS06865 at 1550.527 kb on - strand, within LRK53_RS06865 at 1550.845 kb on - strand, within LRK53_RS06865 at 1550.845 kb on - strand, within LRK53_RS06865 at 1550.883 kb on + strand, within LRK53_RS06865 at 1550.883 kb on + strand, within LRK53_RS06865 at 1550.883 kb on + strand, within LRK53_RS06865 at 1550.884 kb on - strand, within LRK53_RS06865 at 1550.957 kb on + strand, within LRK53_RS06865 at 1550.958 kb on - strand, within LRK53_RS06865 at 1550.958 kb on - strand, within LRK53_RS06865 at 1550.958 kb on - strand, within LRK53_RS06865 at 1551.062 kb on - strand, within LRK53_RS06865 at 1551.069 kb on + strand, within LRK53_RS06865 at 1551.069 kb on + strand, within LRK53_RS06865 at 1551.070 kb on - strand, within LRK53_RS06865 at 1551.070 kb on - strand, within LRK53_RS06865 at 1551.070 kb on - strand, within LRK53_RS06865 at 1551.070 kb on - strand, within LRK53_RS06865
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 1,549,174 - +0.6 1,549,197 + +0.3 1,549,197 + -1.4 1,549,197 + +2.3 1,549,198 - -1.1 1,549,198 - +0.6 1,549,198 - -2.7 1,549,295 + +0.9 1,549,295 + +1.0 1,549,295 + -0.8 1,549,295 + +0.3 1,549,295 + -0.8 1,549,295 + -0.9 1,549,295 + +2.5 1,549,296 - +0.3 1,549,296 - -1.2 1,549,296 - +0.3 1,549,296 - -0.7 1,549,296 - +1.9 1,549,296 - +0.4 1,549,459 + -0.4 1,549,459 + +1.7 1,549,459 + -0.4 1,549,459 + -0.7 1,549,693 + LRK53_RS06860 0.33 -1.1 1,549,693 + LRK53_RS06860 0.33 -1.1 1,549,694 - LRK53_RS06860 0.33 +0.9 1,549,694 - LRK53_RS06860 0.33 -0.3 1,549,694 - LRK53_RS06860 0.33 -3.0 1,549,694 - LRK53_RS06860 0.33 -0.1 1,550,029 + LRK53_RS06860 0.80 -1.0 1,550,029 + LRK53_RS06860 0.80 +0.9 1,550,029 + LRK53_RS06860 0.80 -2.2 1,550,029 + LRK53_RS06860 0.80 -1.0 1,550,029 + LRK53_RS06860 0.80 -1.8 1,550,030 - LRK53_RS06860 0.80 -0.5 1,550,030 - LRK53_RS06860 0.80 +0.1 1,550,271 + -1.1 1,550,272 - LRK53_RS06865 0.10 -0.1 1,550,272 - LRK53_RS06865 0.10 +0.4 1,550,277 + LRK53_RS06865 0.10 -1.3 1,550,277 + LRK53_RS06865 0.10 -0.6 1,550,301 + LRK53_RS06865 0.13 +1.2 1,550,302 - LRK53_RS06865 0.13 -0.1 1,550,334 + LRK53_RS06865 0.16 -1.6 1,550,334 + LRK53_RS06865 0.16 -1.4 1,550,335 - LRK53_RS06865 0.16 -2.5 1,550,354 + LRK53_RS06865 0.18 +0.2 1,550,354 + LRK53_RS06865 0.18 -0.7 1,550,354 + LRK53_RS06865 0.18 -1.9 1,550,354 + LRK53_RS06865 0.18 +0.0 1,550,354 + LRK53_RS06865 0.18 -1.2 1,550,355 - LRK53_RS06865 0.18 +0.2 1,550,355 - LRK53_RS06865 0.18 +0.7 1,550,355 - LRK53_RS06865 0.18 -1.8 1,550,355 - LRK53_RS06865 0.18 +1.1 1,550,355 - LRK53_RS06865 0.18 +0.2 1,550,496 + LRK53_RS06865 0.32 -0.6 1,550,496 + LRK53_RS06865 0.32 -2.0 1,550,496 + LRK53_RS06865 0.32 -0.5 1,550,496 + LRK53_RS06865 0.32 +0.9 1,550,496 + LRK53_RS06865 0.32 -0.5 1,550,496 + LRK53_RS06865 0.32 -0.6 1,550,496 + LRK53_RS06865 0.32 +2.0 1,550,496 + LRK53_RS06865 0.32 +1.4 1,550,497 - LRK53_RS06865 0.32 -0.1 1,550,497 - LRK53_RS06865 0.32 -0.1 1,550,497 - LRK53_RS06865 0.32 -1.5 1,550,497 - LRK53_RS06865 0.32 -1.0 1,550,497 - LRK53_RS06865 0.32 -0.5 1,550,497 - LRK53_RS06865 0.32 +0.2 1,550,526 + LRK53_RS06865 0.35 -0.8 1,550,526 + LRK53_RS06865 0.35 -2.8 1,550,526 + LRK53_RS06865 0.35 +2.5 1,550,526 + LRK53_RS06865 0.35 -0.8 1,550,526 + LRK53_RS06865 0.35 +0.2 1,550,527 - LRK53_RS06865 0.35 -2.1 1,550,527 - LRK53_RS06865 0.35 -1.2 1,550,527 - LRK53_RS06865 0.35 -0.3 1,550,527 - LRK53_RS06865 0.35 -1.8 1,550,845 - LRK53_RS06865 0.67 +1.4 1,550,845 - LRK53_RS06865 0.67 -2.1 1,550,883 + LRK53_RS06865 0.70 +1.7 1,550,883 + LRK53_RS06865 0.70 -1.1 1,550,883 + LRK53_RS06865 0.70 -0.1 1,550,884 - LRK53_RS06865 0.71 -2.0 1,550,957 + LRK53_RS06865 0.78 -1.7 1,550,958 - LRK53_RS06865 0.78 -2.0 1,550,958 - LRK53_RS06865 0.78 -0.5 1,550,958 - LRK53_RS06865 0.78 -0.5 1,551,062 - LRK53_RS06865 0.88 -0.3 1,551,069 + LRK53_RS06865 0.89 -2.8 1,551,069 + LRK53_RS06865 0.89 -0.8 1,551,070 - LRK53_RS06865 0.89 -1.6 1,551,070 - LRK53_RS06865 0.89 +0.4 1,551,070 - LRK53_RS06865 0.89 -0.1 1,551,070 - LRK53_RS06865 0.89 -0.5
Or see this region's nucleotide sequence