Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS06860

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS06855 and LRK53_RS06860 are separated by 293 nucleotidesLRK53_RS06860 and LRK53_RS06865 overlap by 4 nucleotides LRK53_RS06855: LRK53_RS06855 - protein translocase subunit SecF, at 1,548,202 to 1,549,164 _RS06855 LRK53_RS06860: LRK53_RS06860 - nucleotidyltransferase family protein, at 1,549,458 to 1,550,174 _RS06860 LRK53_RS06865: LRK53_RS06865 - phosphotransferase, at 1,550,171 to 1,551,181 _RS06865 Position (kb) 1549 1550 1551Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1549.174 kb on - strandat 1549.197 kb on + strandat 1549.197 kb on + strandat 1549.197 kb on + strandat 1549.198 kb on - strandat 1549.198 kb on - strandat 1549.198 kb on - strandat 1549.295 kb on + strandat 1549.295 kb on + strandat 1549.295 kb on + strandat 1549.295 kb on + strandat 1549.295 kb on + strandat 1549.295 kb on + strandat 1549.295 kb on + strandat 1549.296 kb on - strandat 1549.296 kb on - strandat 1549.296 kb on - strandat 1549.296 kb on - strandat 1549.296 kb on - strandat 1549.296 kb on - strandat 1549.459 kb on + strandat 1549.459 kb on + strandat 1549.459 kb on + strandat 1549.459 kb on + strandat 1549.693 kb on + strand, within LRK53_RS06860at 1549.693 kb on + strand, within LRK53_RS06860at 1549.694 kb on - strand, within LRK53_RS06860at 1549.694 kb on - strand, within LRK53_RS06860at 1549.694 kb on - strand, within LRK53_RS06860at 1549.694 kb on - strand, within LRK53_RS06860at 1550.029 kb on + strand, within LRK53_RS06860at 1550.029 kb on + strand, within LRK53_RS06860at 1550.029 kb on + strand, within LRK53_RS06860at 1550.029 kb on + strand, within LRK53_RS06860at 1550.029 kb on + strand, within LRK53_RS06860at 1550.030 kb on - strand, within LRK53_RS06860at 1550.030 kb on - strand, within LRK53_RS06860at 1550.271 kb on + strandat 1550.272 kb on - strand, within LRK53_RS06865at 1550.272 kb on - strand, within LRK53_RS06865at 1550.277 kb on + strand, within LRK53_RS06865at 1550.277 kb on + strand, within LRK53_RS06865at 1550.301 kb on + strand, within LRK53_RS06865at 1550.302 kb on - strand, within LRK53_RS06865at 1550.334 kb on + strand, within LRK53_RS06865at 1550.334 kb on + strand, within LRK53_RS06865at 1550.335 kb on - strand, within LRK53_RS06865at 1550.354 kb on + strand, within LRK53_RS06865at 1550.354 kb on + strand, within LRK53_RS06865at 1550.354 kb on + strand, within LRK53_RS06865at 1550.354 kb on + strand, within LRK53_RS06865at 1550.354 kb on + strand, within LRK53_RS06865at 1550.355 kb on - strand, within LRK53_RS06865at 1550.355 kb on - strand, within LRK53_RS06865at 1550.355 kb on - strand, within LRK53_RS06865at 1550.355 kb on - strand, within LRK53_RS06865at 1550.355 kb on - strand, within LRK53_RS06865at 1550.496 kb on + strand, within LRK53_RS06865at 1550.496 kb on + strand, within LRK53_RS06865at 1550.496 kb on + strand, within LRK53_RS06865at 1550.496 kb on + strand, within LRK53_RS06865at 1550.496 kb on + strand, within LRK53_RS06865at 1550.496 kb on + strand, within LRK53_RS06865at 1550.496 kb on + strand, within LRK53_RS06865at 1550.496 kb on + strand, within LRK53_RS06865at 1550.497 kb on - strand, within LRK53_RS06865at 1550.497 kb on - strand, within LRK53_RS06865at 1550.497 kb on - strand, within LRK53_RS06865at 1550.497 kb on - strand, within LRK53_RS06865at 1550.497 kb on - strand, within LRK53_RS06865at 1550.497 kb on - strand, within LRK53_RS06865at 1550.526 kb on + strand, within LRK53_RS06865at 1550.526 kb on + strand, within LRK53_RS06865at 1550.526 kb on + strand, within LRK53_RS06865at 1550.526 kb on + strand, within LRK53_RS06865at 1550.526 kb on + strand, within LRK53_RS06865at 1550.527 kb on - strand, within LRK53_RS06865at 1550.527 kb on - strand, within LRK53_RS06865at 1550.527 kb on - strand, within LRK53_RS06865at 1550.527 kb on - strand, within LRK53_RS06865at 1550.845 kb on - strand, within LRK53_RS06865at 1550.845 kb on - strand, within LRK53_RS06865at 1550.883 kb on + strand, within LRK53_RS06865at 1550.883 kb on + strand, within LRK53_RS06865at 1550.883 kb on + strand, within LRK53_RS06865at 1550.884 kb on - strand, within LRK53_RS06865at 1550.957 kb on + strand, within LRK53_RS06865at 1550.958 kb on - strand, within LRK53_RS06865at 1550.958 kb on - strand, within LRK53_RS06865at 1550.958 kb on - strand, within LRK53_RS06865at 1551.062 kb on - strand, within LRK53_RS06865at 1551.069 kb on + strand, within LRK53_RS06865at 1551.069 kb on + strand, within LRK53_RS06865at 1551.070 kb on - strand, within LRK53_RS06865at 1551.070 kb on - strand, within LRK53_RS06865at 1551.070 kb on - strand, within LRK53_RS06865at 1551.070 kb on - strand, within LRK53_RS06865

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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1,549,174 - +0.6
1,549,197 + +0.3
1,549,197 + -1.4
1,549,197 + +2.3
1,549,198 - -1.1
1,549,198 - +0.6
1,549,198 - -2.7
1,549,295 + +0.9
1,549,295 + +1.0
1,549,295 + -0.8
1,549,295 + +0.3
1,549,295 + -0.8
1,549,295 + -0.9
1,549,295 + +2.5
1,549,296 - +0.3
1,549,296 - -1.2
1,549,296 - +0.3
1,549,296 - -0.7
1,549,296 - +1.9
1,549,296 - +0.4
1,549,459 + -0.4
1,549,459 + +1.7
1,549,459 + -0.4
1,549,459 + -0.7
1,549,693 + LRK53_RS06860 0.33 -1.1
1,549,693 + LRK53_RS06860 0.33 -1.1
1,549,694 - LRK53_RS06860 0.33 +0.9
1,549,694 - LRK53_RS06860 0.33 -0.3
1,549,694 - LRK53_RS06860 0.33 -3.0
1,549,694 - LRK53_RS06860 0.33 -0.1
1,550,029 + LRK53_RS06860 0.80 -1.0
1,550,029 + LRK53_RS06860 0.80 +0.9
1,550,029 + LRK53_RS06860 0.80 -2.2
1,550,029 + LRK53_RS06860 0.80 -1.0
1,550,029 + LRK53_RS06860 0.80 -1.8
1,550,030 - LRK53_RS06860 0.80 -0.5
1,550,030 - LRK53_RS06860 0.80 +0.1
1,550,271 + -1.1
1,550,272 - LRK53_RS06865 0.10 -0.1
1,550,272 - LRK53_RS06865 0.10 +0.4
1,550,277 + LRK53_RS06865 0.10 -1.3
1,550,277 + LRK53_RS06865 0.10 -0.6
1,550,301 + LRK53_RS06865 0.13 +1.2
1,550,302 - LRK53_RS06865 0.13 -0.1
1,550,334 + LRK53_RS06865 0.16 -1.6
1,550,334 + LRK53_RS06865 0.16 -1.4
1,550,335 - LRK53_RS06865 0.16 -2.5
1,550,354 + LRK53_RS06865 0.18 +0.2
1,550,354 + LRK53_RS06865 0.18 -0.7
1,550,354 + LRK53_RS06865 0.18 -1.9
1,550,354 + LRK53_RS06865 0.18 +0.0
1,550,354 + LRK53_RS06865 0.18 -1.2
1,550,355 - LRK53_RS06865 0.18 +0.2
1,550,355 - LRK53_RS06865 0.18 +0.7
1,550,355 - LRK53_RS06865 0.18 -1.8
1,550,355 - LRK53_RS06865 0.18 +1.1
1,550,355 - LRK53_RS06865 0.18 +0.2
1,550,496 + LRK53_RS06865 0.32 -0.6
1,550,496 + LRK53_RS06865 0.32 -2.0
1,550,496 + LRK53_RS06865 0.32 -0.5
1,550,496 + LRK53_RS06865 0.32 +0.9
1,550,496 + LRK53_RS06865 0.32 -0.5
1,550,496 + LRK53_RS06865 0.32 -0.6
1,550,496 + LRK53_RS06865 0.32 +2.0
1,550,496 + LRK53_RS06865 0.32 +1.4
1,550,497 - LRK53_RS06865 0.32 -0.1
1,550,497 - LRK53_RS06865 0.32 -0.1
1,550,497 - LRK53_RS06865 0.32 -1.5
1,550,497 - LRK53_RS06865 0.32 -1.0
1,550,497 - LRK53_RS06865 0.32 -0.5
1,550,497 - LRK53_RS06865 0.32 +0.2
1,550,526 + LRK53_RS06865 0.35 -0.8
1,550,526 + LRK53_RS06865 0.35 -2.8
1,550,526 + LRK53_RS06865 0.35 +2.5
1,550,526 + LRK53_RS06865 0.35 -0.8
1,550,526 + LRK53_RS06865 0.35 +0.2
1,550,527 - LRK53_RS06865 0.35 -2.1
1,550,527 - LRK53_RS06865 0.35 -1.2
1,550,527 - LRK53_RS06865 0.35 -0.3
1,550,527 - LRK53_RS06865 0.35 -1.8
1,550,845 - LRK53_RS06865 0.67 +1.4
1,550,845 - LRK53_RS06865 0.67 -2.1
1,550,883 + LRK53_RS06865 0.70 +1.7
1,550,883 + LRK53_RS06865 0.70 -1.1
1,550,883 + LRK53_RS06865 0.70 -0.1
1,550,884 - LRK53_RS06865 0.71 -2.0
1,550,957 + LRK53_RS06865 0.78 -1.7
1,550,958 - LRK53_RS06865 0.78 -2.0
1,550,958 - LRK53_RS06865 0.78 -0.5
1,550,958 - LRK53_RS06865 0.78 -0.5
1,551,062 - LRK53_RS06865 0.88 -0.3
1,551,069 + LRK53_RS06865 0.89 -2.8
1,551,069 + LRK53_RS06865 0.89 -0.8
1,551,070 - LRK53_RS06865 0.89 -1.6
1,551,070 - LRK53_RS06865 0.89 +0.4
1,551,070 - LRK53_RS06865 0.89 -0.1
1,551,070 - LRK53_RS06865 0.89 -0.5

Or see this region's nucleotide sequence