Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS06845

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS06840 and LRK53_RS06845 are separated by 159 nucleotidesLRK53_RS06845 and LRK53_RS06850 are separated by 158 nucleotides LRK53_RS06840: LRK53_RS06840 - tRNA guanosine(34) transglycosylase Tgt, at 1,544,527 to 1,545,654 _RS06840 LRK53_RS06845: LRK53_RS06845 - preprotein translocase subunit YajC, at 1,545,814 to 1,546,146 _RS06845 LRK53_RS06850: LRK53_RS06850 - protein translocase subunit SecD, at 1,546,305 to 1,548,188 _RS06850 Position (kb) 1545 1546 1547Strain fitness (log2 ratio) -2 -1 0 1 2at 1545.106 kb on + strand, within LRK53_RS06840at 1545.406 kb on + strand, within LRK53_RS06840at 1545.406 kb on + strand, within LRK53_RS06840at 1545.406 kb on + strand, within LRK53_RS06840at 1545.406 kb on + strand, within LRK53_RS06840at 1545.407 kb on - strand, within LRK53_RS06840at 1545.407 kb on - strand, within LRK53_RS06840at 1545.448 kb on + strand, within LRK53_RS06840at 1545.448 kb on + strand, within LRK53_RS06840at 1545.448 kb on + strand, within LRK53_RS06840at 1545.448 kb on + strand, within LRK53_RS06840at 1545.448 kb on + strand, within LRK53_RS06840at 1545.449 kb on - strand, within LRK53_RS06840at 1545.449 kb on - strand, within LRK53_RS06840at 1545.449 kb on - strand, within LRK53_RS06840at 1545.449 kb on - strand, within LRK53_RS06840at 1545.479 kb on - strand, within LRK53_RS06840at 1545.547 kb on + strandat 1545.551 kb on - strandat 1545.652 kb on + strandat 1545.745 kb on + strandat 1545.795 kb on + strandat 1545.878 kb on + strand, within LRK53_RS06845at 1545.878 kb on + strand, within LRK53_RS06845at 1545.878 kb on + strand, within LRK53_RS06845at 1545.878 kb on + strand, within LRK53_RS06845at 1545.878 kb on + strand, within LRK53_RS06845at 1545.878 kb on + strand, within LRK53_RS06845at 1545.878 kb on + strand, within LRK53_RS06845at 1545.919 kb on + strand, within LRK53_RS06845at 1545.919 kb on + strand, within LRK53_RS06845at 1545.919 kb on + strand, within LRK53_RS06845at 1545.919 kb on + strand, within LRK53_RS06845at 1545.919 kb on + strand, within LRK53_RS06845at 1545.919 kb on + strand, within LRK53_RS06845at 1545.919 kb on + strand, within LRK53_RS06845at 1545.919 kb on + strand, within LRK53_RS06845at 1545.919 kb on + strand, within LRK53_RS06845at 1545.919 kb on + strand, within LRK53_RS06845at 1545.919 kb on + strand, within LRK53_RS06845at 1545.919 kb on + strand, within LRK53_RS06845at 1545.919 kb on + strand, within LRK53_RS06845at 1545.919 kb on + strand, within LRK53_RS06845at 1545.919 kb on + strand, within LRK53_RS06845at 1546.181 kb on + strandat 1546.181 kb on + strandat 1546.232 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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1,545,106 + LRK53_RS06840 0.51 +0.4
1,545,406 + LRK53_RS06840 0.78 -2.5
1,545,406 + LRK53_RS06840 0.78 +0.4
1,545,406 + LRK53_RS06840 0.78 +1.2
1,545,406 + LRK53_RS06840 0.78 -0.8
1,545,407 - LRK53_RS06840 0.78 -1.1
1,545,407 - LRK53_RS06840 0.78 +0.1
1,545,448 + LRK53_RS06840 0.82 -0.7
1,545,448 + LRK53_RS06840 0.82 -0.3
1,545,448 + LRK53_RS06840 0.82 +0.1
1,545,448 + LRK53_RS06840 0.82 -1.8
1,545,448 + LRK53_RS06840 0.82 -0.3
1,545,449 - LRK53_RS06840 0.82 +0.7
1,545,449 - LRK53_RS06840 0.82 +1.9
1,545,449 - LRK53_RS06840 0.82 -0.8
1,545,449 - LRK53_RS06840 0.82 -0.6
1,545,479 - LRK53_RS06840 0.84 +0.9
1,545,547 + +2.3
1,545,551 - -0.5
1,545,652 + -0.5
1,545,745 + +0.9
1,545,795 + -0.7
1,545,878 + LRK53_RS06845 0.19 -1.0
1,545,878 + LRK53_RS06845 0.19 -2.6
1,545,878 + LRK53_RS06845 0.19 +0.4
1,545,878 + LRK53_RS06845 0.19 -0.1
1,545,878 + LRK53_RS06845 0.19 -1.3
1,545,878 + LRK53_RS06845 0.19 -0.4
1,545,878 + LRK53_RS06845 0.19 +1.2
1,545,919 + LRK53_RS06845 0.32 -0.3
1,545,919 + LRK53_RS06845 0.32 +1.9
1,545,919 + LRK53_RS06845 0.32 -0.5
1,545,919 + LRK53_RS06845 0.32 -0.5
1,545,919 + LRK53_RS06845 0.32 -0.7
1,545,919 + LRK53_RS06845 0.32 -0.5
1,545,919 + LRK53_RS06845 0.32 -0.3
1,545,919 + LRK53_RS06845 0.32 +0.4
1,545,919 + LRK53_RS06845 0.32 +1.9
1,545,919 + LRK53_RS06845 0.32 -0.8
1,545,919 + LRK53_RS06845 0.32 +0.2
1,545,919 + LRK53_RS06845 0.32 +0.2
1,545,919 + LRK53_RS06845 0.32 +0.2
1,545,919 + LRK53_RS06845 0.32 -0.3
1,545,919 + LRK53_RS06845 0.32 -0.2
1,546,181 + -1.2
1,546,181 + -2.0
1,546,232 + -0.5

Or see this region's nucleotide sequence