Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS06615

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS06610 and LRK53_RS06615 overlap by 4 nucleotidesLRK53_RS06615 and LRK53_RS06620 are separated by 154 nucleotides LRK53_RS06610: LRK53_RS06610 - tRNA lysidine(34) synthetase TilS, at 1,496,684 to 1,497,988 _RS06610 LRK53_RS06615: LRK53_RS06615 - NYN domain-containing protein, at 1,497,985 to 1,498,719 _RS06615 LRK53_RS06620: LRK53_RS06620 - acetyl-CoA carboxylase carboxyltransferase subunit alpha, at 1,498,874 to 1,499,830 _RS06620 Position (kb) 1497 1498 1499Strain fitness (log2 ratio) -2 -1 0 1 2at 1498.013 kb on + strandat 1498.013 kb on + strandat 1498.013 kb on + strandat 1498.013 kb on + strandat 1498.013 kb on + strandat 1498.013 kb on + strandat 1498.013 kb on + strandat 1498.013 kb on + strandat 1498.014 kb on - strandat 1498.094 kb on + strand, within LRK53_RS06615at 1498.095 kb on - strand, within LRK53_RS06615at 1498.100 kb on + strand, within LRK53_RS06615at 1498.100 kb on + strand, within LRK53_RS06615at 1498.100 kb on + strand, within LRK53_RS06615at 1498.100 kb on + strand, within LRK53_RS06615at 1498.101 kb on - strand, within LRK53_RS06615at 1498.101 kb on - strand, within LRK53_RS06615at 1498.101 kb on - strand, within LRK53_RS06615at 1498.101 kb on - strand, within LRK53_RS06615at 1498.308 kb on - strand, within LRK53_RS06615at 1498.308 kb on - strand, within LRK53_RS06615at 1498.308 kb on - strand, within LRK53_RS06615at 1498.308 kb on - strand, within LRK53_RS06615at 1498.308 kb on - strand, within LRK53_RS06615at 1498.308 kb on - strand, within LRK53_RS06615at 1498.461 kb on - strand, within LRK53_RS06615at 1498.605 kb on - strand, within LRK53_RS06615at 1498.605 kb on - strand, within LRK53_RS06615at 1498.605 kb on - strand, within LRK53_RS06615at 1498.632 kb on - strand, within LRK53_RS06615at 1498.632 kb on - strand, within LRK53_RS06615at 1498.632 kb on - strand, within LRK53_RS06615at 1498.697 kb on - strandat 1498.753 kb on + strandat 1498.754 kb on - strandat 1498.784 kb on - strandat 1498.837 kb on + strandat 1498.837 kb on + strandat 1498.859 kb on + strandat 1498.859 kb on + strandat 1498.874 kb on + strandat 1498.875 kb on + strandat 1498.875 kb on + strandat 1498.875 kb on + strandat 1498.875 kb on + strandat 1498.876 kb on - strandat 1498.876 kb on - strandat 1498.876 kb on - strandat 1498.876 kb on - strandat 1498.876 kb on - strandat 1498.884 kb on + strandat 1498.884 kb on + strandat 1498.884 kb on + strandat 1498.885 kb on - strandat 1498.885 kb on - strandat 1498.885 kb on - strandat 1498.893 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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1,498,013 + -1.7
1,498,013 + -0.3
1,498,013 + -2.1
1,498,013 + -0.3
1,498,013 + -0.5
1,498,013 + -1.2
1,498,013 + -2.1
1,498,013 + -1.3
1,498,014 - -1.7
1,498,094 + LRK53_RS06615 0.15 -2.7
1,498,095 - LRK53_RS06615 0.15 +2.0
1,498,100 + LRK53_RS06615 0.16 -0.4
1,498,100 + LRK53_RS06615 0.16 +0.7
1,498,100 + LRK53_RS06615 0.16 -0.2
1,498,100 + LRK53_RS06615 0.16 -1.0
1,498,101 - LRK53_RS06615 0.16 -1.0
1,498,101 - LRK53_RS06615 0.16 +0.3
1,498,101 - LRK53_RS06615 0.16 -0.0
1,498,101 - LRK53_RS06615 0.16 +1.1
1,498,308 - LRK53_RS06615 0.44 +1.1
1,498,308 - LRK53_RS06615 0.44 +1.8
1,498,308 - LRK53_RS06615 0.44 -0.3
1,498,308 - LRK53_RS06615 0.44 +0.5
1,498,308 - LRK53_RS06615 0.44 +1.1
1,498,308 - LRK53_RS06615 0.44 +1.2
1,498,461 - LRK53_RS06615 0.65 -0.6
1,498,605 - LRK53_RS06615 0.84 -0.5
1,498,605 - LRK53_RS06615 0.84 -0.7
1,498,605 - LRK53_RS06615 0.84 +0.8
1,498,632 - LRK53_RS06615 0.88 -0.8
1,498,632 - LRK53_RS06615 0.88 +1.0
1,498,632 - LRK53_RS06615 0.88 +0.3
1,498,697 - -0.1
1,498,753 + -0.7
1,498,754 - -2.3
1,498,784 - -0.0
1,498,837 + -2.6
1,498,837 + -2.6
1,498,859 + -1.0
1,498,859 + +1.4
1,498,874 + +0.3
1,498,875 + -1.2
1,498,875 + -1.3
1,498,875 + -0.5
1,498,875 + -0.0
1,498,876 - +1.2
1,498,876 - +0.4
1,498,876 - -1.1
1,498,876 - -1.0
1,498,876 - +0.1
1,498,884 + -2.7
1,498,884 + -0.7
1,498,884 + -0.8
1,498,885 - -1.2
1,498,885 - -1.1
1,498,885 - +0.1
1,498,893 + +1.0

Or see this region's nucleotide sequence