Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS06610 and LRK53_RS06615 overlap by 4 nucleotides LRK53_RS06615 and LRK53_RS06620 are separated by 154 nucleotides
LRK53_RS06610: LRK53_RS06610 - tRNA lysidine(34) synthetase TilS, at 1,496,684 to 1,497,988
_RS06610
LRK53_RS06615: LRK53_RS06615 - NYN domain-containing protein, at 1,497,985 to 1,498,719
_RS06615
LRK53_RS06620: LRK53_RS06620 - acetyl-CoA carboxylase carboxyltransferase subunit alpha, at 1,498,874 to 1,499,830
_RS06620
Position (kb)
1497
1498
1499 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1498.013 kb on + strand at 1498.013 kb on + strand at 1498.013 kb on + strand at 1498.013 kb on + strand at 1498.013 kb on + strand at 1498.013 kb on + strand at 1498.013 kb on + strand at 1498.013 kb on + strand at 1498.014 kb on - strand at 1498.094 kb on + strand, within LRK53_RS06615 at 1498.095 kb on - strand, within LRK53_RS06615 at 1498.100 kb on + strand, within LRK53_RS06615 at 1498.100 kb on + strand, within LRK53_RS06615 at 1498.100 kb on + strand, within LRK53_RS06615 at 1498.100 kb on + strand, within LRK53_RS06615 at 1498.101 kb on - strand, within LRK53_RS06615 at 1498.101 kb on - strand, within LRK53_RS06615 at 1498.101 kb on - strand, within LRK53_RS06615 at 1498.101 kb on - strand, within LRK53_RS06615 at 1498.308 kb on - strand, within LRK53_RS06615 at 1498.308 kb on - strand, within LRK53_RS06615 at 1498.308 kb on - strand, within LRK53_RS06615 at 1498.308 kb on - strand, within LRK53_RS06615 at 1498.308 kb on - strand, within LRK53_RS06615 at 1498.308 kb on - strand, within LRK53_RS06615 at 1498.461 kb on - strand, within LRK53_RS06615 at 1498.605 kb on - strand, within LRK53_RS06615 at 1498.605 kb on - strand, within LRK53_RS06615 at 1498.605 kb on - strand, within LRK53_RS06615 at 1498.632 kb on - strand, within LRK53_RS06615 at 1498.632 kb on - strand, within LRK53_RS06615 at 1498.632 kb on - strand, within LRK53_RS06615 at 1498.697 kb on - strand at 1498.753 kb on + strand at 1498.754 kb on - strand at 1498.784 kb on - strand at 1498.837 kb on + strand at 1498.837 kb on + strand at 1498.859 kb on + strand at 1498.859 kb on + strand at 1498.874 kb on + strand at 1498.875 kb on + strand at 1498.875 kb on + strand at 1498.875 kb on + strand at 1498.875 kb on + strand at 1498.876 kb on - strand at 1498.876 kb on - strand at 1498.876 kb on - strand at 1498.876 kb on - strand at 1498.876 kb on - strand at 1498.884 kb on + strand at 1498.884 kb on + strand at 1498.884 kb on + strand at 1498.885 kb on - strand at 1498.885 kb on - strand at 1498.885 kb on - strand at 1498.893 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 1,498,013 + -1.7 1,498,013 + -0.3 1,498,013 + -2.1 1,498,013 + -0.3 1,498,013 + -0.5 1,498,013 + -1.2 1,498,013 + -2.1 1,498,013 + -1.3 1,498,014 - -1.7 1,498,094 + LRK53_RS06615 0.15 -2.7 1,498,095 - LRK53_RS06615 0.15 +2.0 1,498,100 + LRK53_RS06615 0.16 -0.4 1,498,100 + LRK53_RS06615 0.16 +0.7 1,498,100 + LRK53_RS06615 0.16 -0.2 1,498,100 + LRK53_RS06615 0.16 -1.0 1,498,101 - LRK53_RS06615 0.16 -1.0 1,498,101 - LRK53_RS06615 0.16 +0.3 1,498,101 - LRK53_RS06615 0.16 -0.0 1,498,101 - LRK53_RS06615 0.16 +1.1 1,498,308 - LRK53_RS06615 0.44 +1.1 1,498,308 - LRK53_RS06615 0.44 +1.8 1,498,308 - LRK53_RS06615 0.44 -0.3 1,498,308 - LRK53_RS06615 0.44 +0.5 1,498,308 - LRK53_RS06615 0.44 +1.1 1,498,308 - LRK53_RS06615 0.44 +1.2 1,498,461 - LRK53_RS06615 0.65 -0.6 1,498,605 - LRK53_RS06615 0.84 -0.5 1,498,605 - LRK53_RS06615 0.84 -0.7 1,498,605 - LRK53_RS06615 0.84 +0.8 1,498,632 - LRK53_RS06615 0.88 -0.8 1,498,632 - LRK53_RS06615 0.88 +1.0 1,498,632 - LRK53_RS06615 0.88 +0.3 1,498,697 - -0.1 1,498,753 + -0.7 1,498,754 - -2.3 1,498,784 - -0.0 1,498,837 + -2.6 1,498,837 + -2.6 1,498,859 + -1.0 1,498,859 + +1.4 1,498,874 + +0.3 1,498,875 + -1.2 1,498,875 + -1.3 1,498,875 + -0.5 1,498,875 + -0.0 1,498,876 - +1.2 1,498,876 - +0.4 1,498,876 - -1.1 1,498,876 - -1.0 1,498,876 - +0.1 1,498,884 + -2.7 1,498,884 + -0.7 1,498,884 + -0.8 1,498,885 - -1.2 1,498,885 - -1.1 1,498,885 - +0.1 1,498,893 + +1.0
Or see this region's nucleotide sequence