Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS06490 and LRK53_RS06495 are separated by 299 nucleotides LRK53_RS06495 and LRK53_RS06500 are separated by 177 nucleotides LRK53_RS06500 and LRK53_RS06505 are separated by 29 nucleotides
LRK53_RS06490: LRK53_RS06490 - DNA-directed RNA polymerase subunit alpha, at 1,470,782 to 1,471,780
_RS06490
LRK53_RS06495: LRK53_RS06495 - 50S ribosomal protein L17, at 1,472,080 to 1,472,463
_RS06495
LRK53_RS06500: LRK53_RS06500 - disulfide bond formation protein B, at 1,472,641 to 1,473,144
_RS06500
LRK53_RS06505: LRK53_RS06505 - 3-deoxy-7-phosphoheptulonate synthase class II, at 1,473,174 to 1,474,544
_RS06505
Position (kb)
1472
1473
1474 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1472.053 kb on + strand at 1472.461 kb on + strand at 1472.461 kb on + strand at 1472.461 kb on + strand at 1472.461 kb on + strand at 1472.462 kb on - strand at 1472.535 kb on + strand at 1472.535 kb on + strand at 1472.535 kb on + strand at 1472.535 kb on + strand at 1472.535 kb on + strand at 1472.535 kb on + strand at 1472.535 kb on + strand at 1472.535 kb on + strand at 1472.535 kb on + strand at 1472.535 kb on + strand at 1472.535 kb on + strand at 1472.535 kb on + strand at 1472.535 kb on + strand at 1472.535 kb on + strand at 1472.535 kb on + strand at 1472.536 kb on - strand at 1472.536 kb on - strand at 1472.536 kb on - strand at 1472.536 kb on - strand at 1472.536 kb on - strand at 1472.536 kb on - strand at 1472.536 kb on - strand at 1472.536 kb on - strand at 1472.536 kb on - strand at 1472.537 kb on + strand at 1472.537 kb on + strand at 1472.537 kb on + strand at 1472.537 kb on + strand at 1472.537 kb on + strand at 1472.537 kb on + strand at 1472.537 kb on + strand at 1472.537 kb on + strand at 1472.537 kb on + strand at 1472.537 kb on + strand at 1472.537 kb on + strand at 1472.537 kb on + strand at 1472.537 kb on + strand at 1472.537 kb on + strand at 1472.537 kb on + strand at 1472.537 kb on + strand at 1472.537 kb on + strand at 1472.538 kb on - strand at 1472.538 kb on - strand at 1472.538 kb on - strand at 1472.538 kb on - strand at 1472.538 kb on - strand at 1472.538 kb on - strand at 1472.607 kb on + strand at 1472.608 kb on - strand at 1472.608 kb on - strand at 1472.662 kb on + strand at 1472.722 kb on + strand, within LRK53_RS06500 at 1472.852 kb on - strand, within LRK53_RS06500 at 1472.852 kb on - strand, within LRK53_RS06500 at 1472.852 kb on - strand, within LRK53_RS06500 at 1473.085 kb on + strand, within LRK53_RS06500 at 1473.086 kb on - strand, within LRK53_RS06500 at 1473.188 kb on - strand at 1473.261 kb on + strand at 1473.261 kb on + strand at 1473.262 kb on - strand at 1473.537 kb on + strand, within LRK53_RS06505 at 1473.537 kb on + strand, within LRK53_RS06505 at 1473.537 kb on + strand, within LRK53_RS06505 at 1473.538 kb on - strand, within LRK53_RS06505 at 1473.538 kb on - strand, within LRK53_RS06505 at 1473.538 kb on - strand, within LRK53_RS06505 at 1473.538 kb on - strand, within LRK53_RS06505 at 1473.538 kb on - strand, within LRK53_RS06505 at 1473.538 kb on - strand, within LRK53_RS06505 at 1473.538 kb on - strand, within LRK53_RS06505 at 1473.750 kb on + strand, within LRK53_RS06505 at 1473.751 kb on - strand, within LRK53_RS06505 at 1473.751 kb on - strand, within LRK53_RS06505 at 1473.796 kb on - strand, within LRK53_RS06505 at 1473.808 kb on + strand, within LRK53_RS06505 at 1473.916 kb on - strand, within LRK53_RS06505 at 1474.030 kb on - strand, within LRK53_RS06505 at 1474.030 kb on - strand, within LRK53_RS06505 at 1474.030 kb on - strand, within LRK53_RS06505
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 1,472,053 + -0.4 1,472,461 + -0.7 1,472,461 + +0.0 1,472,461 + -0.2 1,472,461 + +2.5 1,472,462 - +0.3 1,472,535 + -0.5 1,472,535 + +0.1 1,472,535 + -2.1 1,472,535 + +0.9 1,472,535 + -1.2 1,472,535 + -1.1 1,472,535 + -0.1 1,472,535 + +0.6 1,472,535 + -1.9 1,472,535 + +0.1 1,472,535 + +0.6 1,472,535 + -0.9 1,472,535 + -1.4 1,472,535 + -1.2 1,472,535 + +0.8 1,472,536 - -0.7 1,472,536 - -0.1 1,472,536 - -1.3 1,472,536 - +0.6 1,472,536 - +0.7 1,472,536 - +0.7 1,472,536 - +0.0 1,472,536 - -0.7 1,472,536 - +0.3 1,472,537 + +0.8 1,472,537 + -0.7 1,472,537 + +0.1 1,472,537 + -1.9 1,472,537 + +1.5 1,472,537 + -0.7 1,472,537 + -0.4 1,472,537 + -0.2 1,472,537 + -0.9 1,472,537 + +0.8 1,472,537 + -1.6 1,472,537 + -0.4 1,472,537 + +1.0 1,472,537 + -2.8 1,472,537 + +0.0 1,472,537 + -1.1 1,472,537 + -2.0 1,472,538 - +0.1 1,472,538 - +1.1 1,472,538 - -0.9 1,472,538 - +1.1 1,472,538 - +1.0 1,472,538 - +1.5 1,472,607 + -0.2 1,472,608 - -0.4 1,472,608 - -0.1 1,472,662 + -0.8 1,472,722 + LRK53_RS06500 0.16 +0.2 1,472,852 - LRK53_RS06500 0.42 -0.1 1,472,852 - LRK53_RS06500 0.42 +0.9 1,472,852 - LRK53_RS06500 0.42 -0.1 1,473,085 + LRK53_RS06500 0.88 +1.9 1,473,086 - LRK53_RS06500 0.88 -1.9 1,473,188 - +0.2 1,473,261 + -2.8 1,473,261 + -0.4 1,473,262 - -1.9 1,473,537 + LRK53_RS06505 0.26 -1.3 1,473,537 + LRK53_RS06505 0.26 -1.5 1,473,537 + LRK53_RS06505 0.26 +0.4 1,473,538 - LRK53_RS06505 0.27 +1.1 1,473,538 - LRK53_RS06505 0.27 -0.5 1,473,538 - LRK53_RS06505 0.27 -2.0 1,473,538 - LRK53_RS06505 0.27 +0.4 1,473,538 - LRK53_RS06505 0.27 -0.4 1,473,538 - LRK53_RS06505 0.27 -0.7 1,473,538 - LRK53_RS06505 0.27 +0.6 1,473,750 + LRK53_RS06505 0.42 +0.1 1,473,751 - LRK53_RS06505 0.42 +2.3 1,473,751 - LRK53_RS06505 0.42 -1.1 1,473,796 - LRK53_RS06505 0.45 -0.8 1,473,808 + LRK53_RS06505 0.46 +1.1 1,473,916 - LRK53_RS06505 0.54 +1.1 1,474,030 - LRK53_RS06505 0.62 -2.9 1,474,030 - LRK53_RS06505 0.62 -3.3 1,474,030 - LRK53_RS06505 0.62 +1.3
Or see this region's nucleotide sequence