Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS06500

Experiment: Biofilm; Day2; SGW; pH7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS06490 and LRK53_RS06495 are separated by 299 nucleotidesLRK53_RS06495 and LRK53_RS06500 are separated by 177 nucleotidesLRK53_RS06500 and LRK53_RS06505 are separated by 29 nucleotides LRK53_RS06490: LRK53_RS06490 - DNA-directed RNA polymerase subunit alpha, at 1,470,782 to 1,471,780 _RS06490 LRK53_RS06495: LRK53_RS06495 - 50S ribosomal protein L17, at 1,472,080 to 1,472,463 _RS06495 LRK53_RS06500: LRK53_RS06500 - disulfide bond formation protein B, at 1,472,641 to 1,473,144 _RS06500 LRK53_RS06505: LRK53_RS06505 - 3-deoxy-7-phosphoheptulonate synthase class II, at 1,473,174 to 1,474,544 _RS06505 Position (kb) 1472 1473 1474Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1472.053 kb on + strandat 1472.461 kb on + strandat 1472.461 kb on + strandat 1472.461 kb on + strandat 1472.461 kb on + strandat 1472.462 kb on - strandat 1472.535 kb on + strandat 1472.535 kb on + strandat 1472.535 kb on + strandat 1472.535 kb on + strandat 1472.535 kb on + strandat 1472.535 kb on + strandat 1472.535 kb on + strandat 1472.535 kb on + strandat 1472.535 kb on + strandat 1472.535 kb on + strandat 1472.535 kb on + strandat 1472.535 kb on + strandat 1472.535 kb on + strandat 1472.535 kb on + strandat 1472.535 kb on + strandat 1472.536 kb on - strandat 1472.536 kb on - strandat 1472.536 kb on - strandat 1472.536 kb on - strandat 1472.536 kb on - strandat 1472.536 kb on - strandat 1472.536 kb on - strandat 1472.536 kb on - strandat 1472.536 kb on - strandat 1472.537 kb on + strandat 1472.537 kb on + strandat 1472.537 kb on + strandat 1472.537 kb on + strandat 1472.537 kb on + strandat 1472.537 kb on + strandat 1472.537 kb on + strandat 1472.537 kb on + strandat 1472.537 kb on + strandat 1472.537 kb on + strandat 1472.537 kb on + strandat 1472.537 kb on + strandat 1472.537 kb on + strandat 1472.537 kb on + strandat 1472.537 kb on + strandat 1472.537 kb on + strandat 1472.537 kb on + strandat 1472.538 kb on - strandat 1472.538 kb on - strandat 1472.538 kb on - strandat 1472.538 kb on - strandat 1472.538 kb on - strandat 1472.538 kb on - strandat 1472.607 kb on + strandat 1472.608 kb on - strandat 1472.608 kb on - strandat 1472.662 kb on + strandat 1472.722 kb on + strand, within LRK53_RS06500at 1472.852 kb on - strand, within LRK53_RS06500at 1472.852 kb on - strand, within LRK53_RS06500at 1472.852 kb on - strand, within LRK53_RS06500at 1473.085 kb on + strand, within LRK53_RS06500at 1473.086 kb on - strand, within LRK53_RS06500at 1473.188 kb on - strandat 1473.261 kb on + strandat 1473.261 kb on + strandat 1473.262 kb on - strandat 1473.537 kb on + strand, within LRK53_RS06505at 1473.537 kb on + strand, within LRK53_RS06505at 1473.537 kb on + strand, within LRK53_RS06505at 1473.538 kb on - strand, within LRK53_RS06505at 1473.538 kb on - strand, within LRK53_RS06505at 1473.538 kb on - strand, within LRK53_RS06505at 1473.538 kb on - strand, within LRK53_RS06505at 1473.538 kb on - strand, within LRK53_RS06505at 1473.538 kb on - strand, within LRK53_RS06505at 1473.538 kb on - strand, within LRK53_RS06505at 1473.750 kb on + strand, within LRK53_RS06505at 1473.751 kb on - strand, within LRK53_RS06505at 1473.751 kb on - strand, within LRK53_RS06505at 1473.796 kb on - strand, within LRK53_RS06505at 1473.808 kb on + strand, within LRK53_RS06505at 1473.916 kb on - strand, within LRK53_RS06505at 1474.030 kb on - strand, within LRK53_RS06505at 1474.030 kb on - strand, within LRK53_RS06505at 1474.030 kb on - strand, within LRK53_RS06505

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
remove
1,472,053 + -0.4
1,472,461 + -0.7
1,472,461 + +0.0
1,472,461 + -0.2
1,472,461 + +2.5
1,472,462 - +0.3
1,472,535 + -0.5
1,472,535 + +0.1
1,472,535 + -2.1
1,472,535 + +0.9
1,472,535 + -1.2
1,472,535 + -1.1
1,472,535 + -0.1
1,472,535 + +0.6
1,472,535 + -1.9
1,472,535 + +0.1
1,472,535 + +0.6
1,472,535 + -0.9
1,472,535 + -1.4
1,472,535 + -1.2
1,472,535 + +0.8
1,472,536 - -0.7
1,472,536 - -0.1
1,472,536 - -1.3
1,472,536 - +0.6
1,472,536 - +0.7
1,472,536 - +0.7
1,472,536 - +0.0
1,472,536 - -0.7
1,472,536 - +0.3
1,472,537 + +0.8
1,472,537 + -0.7
1,472,537 + +0.1
1,472,537 + -1.9
1,472,537 + +1.5
1,472,537 + -0.7
1,472,537 + -0.4
1,472,537 + -0.2
1,472,537 + -0.9
1,472,537 + +0.8
1,472,537 + -1.6
1,472,537 + -0.4
1,472,537 + +1.0
1,472,537 + -2.8
1,472,537 + +0.0
1,472,537 + -1.1
1,472,537 + -2.0
1,472,538 - +0.1
1,472,538 - +1.1
1,472,538 - -0.9
1,472,538 - +1.1
1,472,538 - +1.0
1,472,538 - +1.5
1,472,607 + -0.2
1,472,608 - -0.4
1,472,608 - -0.1
1,472,662 + -0.8
1,472,722 + LRK53_RS06500 0.16 +0.2
1,472,852 - LRK53_RS06500 0.42 -0.1
1,472,852 - LRK53_RS06500 0.42 +0.9
1,472,852 - LRK53_RS06500 0.42 -0.1
1,473,085 + LRK53_RS06500 0.88 +1.9
1,473,086 - LRK53_RS06500 0.88 -1.9
1,473,188 - +0.2
1,473,261 + -2.8
1,473,261 + -0.4
1,473,262 - -1.9
1,473,537 + LRK53_RS06505 0.26 -1.3
1,473,537 + LRK53_RS06505 0.26 -1.5
1,473,537 + LRK53_RS06505 0.26 +0.4
1,473,538 - LRK53_RS06505 0.27 +1.1
1,473,538 - LRK53_RS06505 0.27 -0.5
1,473,538 - LRK53_RS06505 0.27 -2.0
1,473,538 - LRK53_RS06505 0.27 +0.4
1,473,538 - LRK53_RS06505 0.27 -0.4
1,473,538 - LRK53_RS06505 0.27 -0.7
1,473,538 - LRK53_RS06505 0.27 +0.6
1,473,750 + LRK53_RS06505 0.42 +0.1
1,473,751 - LRK53_RS06505 0.42 +2.3
1,473,751 - LRK53_RS06505 0.42 -1.1
1,473,796 - LRK53_RS06505 0.45 -0.8
1,473,808 + LRK53_RS06505 0.46 +1.1
1,473,916 - LRK53_RS06505 0.54 +1.1
1,474,030 - LRK53_RS06505 0.62 -2.9
1,474,030 - LRK53_RS06505 0.62 -3.3
1,474,030 - LRK53_RS06505 0.62 +1.3

Or see this region's nucleotide sequence