Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS06225 and LRK53_RS06230 overlap by 4 nucleotides LRK53_RS06230 and LRK53_RS06235 are separated by 51 nucleotides LRK53_RS06235 and LRK53_RS06240 are separated by 48 nucleotides LRK53_RS06240 and LRK53_RS06245 are separated by 50 nucleotides
LRK53_RS06225: LRK53_RS06225 - tetratricopeptide repeat protein, at 1,427,123 to 1,428,880
_RS06225
LRK53_RS06230: LRK53_RS06230 - lipoprotein insertase outer membrane protein LolB, at 1,428,877 to 1,429,488
_RS06230
LRK53_RS06235: LRK53_RS06235 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, at 1,429,540 to 1,430,922
_RS06235
LRK53_RS06240: LRK53_RS06240 - tRNA-Gln, at 1,430,971 to 1,431,047
_RS06240
LRK53_RS06245: LRK53_RS06245 - ribose-phosphate diphosphokinase, at 1,431,098 to 1,432,039
_RS06245
Position (kb) 1429
1430
1431 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1428.561 kb on - strand, within LRK53_RS06225 at 1428.561 kb on - strand, within LRK53_RS06225 at 1429.645 kb on + strand at 1429.810 kb on + strand, within LRK53_RS06235 at 1429.811 kb on - strand, within LRK53_RS06235 at 1429.811 kb on - strand, within LRK53_RS06235 at 1429.892 kb on + strand, within LRK53_RS06235 at 1429.892 kb on + strand, within LRK53_RS06235 at 1429.893 kb on - strand, within LRK53_RS06235 at 1429.893 kb on - strand, within LRK53_RS06235 at 1429.893 kb on - strand, within LRK53_RS06235 at 1430.030 kb on + strand, within LRK53_RS06235 at 1430.030 kb on + strand, within LRK53_RS06235 at 1430.957 kb on + strand at 1430.957 kb on + strand at 1430.957 kb on + strand at 1430.957 kb on + strand at 1430.957 kb on + strand at 1430.957 kb on + strand at 1430.957 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1430.965 kb on + strand at 1431.073 kb on + strand at 1431.073 kb on + strand at 1431.073 kb on + strand at 1431.073 kb on + strand at 1431.073 kb on + strand at 1431.073 kb on + strand at 1431.073 kb on + strand at 1431.073 kb on + strand at 1431.073 kb on + strand at 1431.073 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 1,428,561 - LRK53_RS06225 0.82 -1.4 1,428,561 - LRK53_RS06225 0.82 +0.2 1,429,645 + -0.5 1,429,810 + LRK53_RS06235 0.20 -0.5 1,429,811 - LRK53_RS06235 0.20 +0.8 1,429,811 - LRK53_RS06235 0.20 -0.5 1,429,892 + LRK53_RS06235 0.25 -0.2 1,429,892 + LRK53_RS06235 0.25 -0.3 1,429,893 - LRK53_RS06235 0.26 -1.2 1,429,893 - LRK53_RS06235 0.26 -1.1 1,429,893 - LRK53_RS06235 0.26 -0.6 1,430,030 + LRK53_RS06235 0.35 -0.8 1,430,030 + LRK53_RS06235 0.35 -1.4 1,430,957 + -1.3 1,430,957 + -2.1 1,430,957 + -0.7 1,430,957 + -0.3 1,430,957 + -0.7 1,430,957 + +1.1 1,430,957 + -0.7 1,430,965 + +1.1 1,430,965 + +0.1 1,430,965 + -2.4 1,430,965 + -0.6 1,430,965 + -0.4 1,430,965 + +0.7 1,430,965 + +0.9 1,430,965 + +0.2 1,430,965 + +0.6 1,430,965 + +0.7 1,430,965 + -0.2 1,430,965 + -0.1 1,430,965 + -0.1 1,430,965 + -0.5 1,430,965 + -0.6 1,430,965 + +0.7 1,430,965 + -0.8 1,430,965 + +1.4 1,430,965 + +0.5 1,430,965 + -0.6 1,430,965 + -2.0 1,430,965 + -1.4 1,430,965 + -0.2 1,430,965 + -1.6 1,430,965 + -0.1 1,430,965 + +0.1 1,430,965 + +0.1 1,430,965 + -0.7 1,430,965 + -2.3 1,430,965 + -0.2 1,430,965 + -2.1 1,430,965 + -0.2 1,430,965 + +0.9 1,430,965 + -0.6 1,430,965 + -0.9 1,430,965 + -0.3 1,430,965 + +0.3 1,430,965 + -1.7 1,430,965 + -1.1 1,430,965 + -0.3 1,430,965 + -0.1 1,430,965 + -1.2 1,430,965 + -0.1 1,430,965 + -2.6 1,430,965 + -0.1 1,430,965 + -0.7 1,430,965 + -0.6 1,430,965 + -1.1 1,430,965 + +1.8 1,430,965 + -1.5 1,430,965 + +0.2 1,430,965 + -0.0 1,430,965 + -0.9 1,430,965 + -0.3 1,430,965 + -0.5 1,430,965 + -1.6 1,430,965 + -2.4 1,430,965 + -0.1 1,430,965 + -0.0 1,430,965 + -0.7 1,431,073 + -1.9 1,431,073 + -1.8 1,431,073 + -0.5 1,431,073 + -0.1 1,431,073 + -2.2 1,431,073 + +0.9 1,431,073 + -1.4 1,431,073 + -0.0 1,431,073 + +1.1 1,431,073 + -1.3
Or see this region's nucleotide sequence