Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS05765

Experiment: Biofilm; Day2; SGW; pH7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS05755 and LRK53_RS05760 overlap by 4 nucleotidesLRK53_RS05760 and LRK53_RS05765 are separated by 22 nucleotidesLRK53_RS05765 and LRK53_RS05770 are separated by 179 nucleotidesLRK53_RS05770 and LRK53_RS05775 are separated by 11 nucleotides LRK53_RS05755: LRK53_RS05755 - chemotaxis protein CheB, at 1,338,520 to 1,340,175 _RS05755 LRK53_RS05760: LRK53_RS05760 - chemotaxis protein CheW, at 1,340,172 to 1,340,681 _RS05760 LRK53_RS05765: LRK53_RS05765 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 1,340,704 to 1,341,438 _RS05765 LRK53_RS05770: LRK53_RS05770 - hypothetical protein, at 1,341,618 to 1,341,932 _RS05770 LRK53_RS05775: LRK53_RS05775 - adenosylmethionine--8-amino-7-oxononanoate transaminase, at 1,341,944 to 1,343,308 _RS05775 Position (kb) 1340 1341 1342Strain fitness (log2 ratio) -2 -1 0 1 2at 1339.829 kb on + strand, within LRK53_RS05755at 1339.829 kb on + strand, within LRK53_RS05755at 1339.829 kb on + strand, within LRK53_RS05755at 1339.829 kb on + strand, within LRK53_RS05755at 1339.829 kb on + strand, within LRK53_RS05755at 1339.829 kb on + strand, within LRK53_RS05755at 1339.829 kb on + strand, within LRK53_RS05755at 1339.829 kb on + strand, within LRK53_RS05755at 1339.829 kb on + strand, within LRK53_RS05755at 1339.830 kb on - strand, within LRK53_RS05755at 1339.830 kb on - strand, within LRK53_RS05755at 1339.830 kb on - strand, within LRK53_RS05755at 1339.830 kb on - strand, within LRK53_RS05755at 1339.830 kb on - strand, within LRK53_RS05755at 1339.830 kb on - strand, within LRK53_RS05755at 1339.830 kb on - strand, within LRK53_RS05755at 1339.830 kb on - strand, within LRK53_RS05755at 1340.416 kb on + strand, within LRK53_RS05760at 1341.224 kb on - strand, within LRK53_RS05765at 1341.224 kb on - strand, within LRK53_RS05765at 1341.224 kb on - strand, within LRK53_RS05765at 1341.290 kb on + strand, within LRK53_RS05765at 1341.472 kb on + strandat 1341.472 kb on + strandat 1341.555 kb on + strandat 1341.555 kb on + strandat 1341.556 kb on - strandat 1341.556 kb on - strandat 1341.556 kb on - strandat 1341.556 kb on - strandat 1341.556 kb on - strandat 1341.556 kb on - strandat 1341.765 kb on + strand, within LRK53_RS05770at 1341.765 kb on + strand, within LRK53_RS05770at 1341.766 kb on - strand, within LRK53_RS05770at 1341.766 kb on - strand, within LRK53_RS05770at 1341.766 kb on - strand, within LRK53_RS05770at 1341.766 kb on - strand, within LRK53_RS05770at 1341.794 kb on + strand, within LRK53_RS05770at 1341.840 kb on + strand, within LRK53_RS05770at 1341.840 kb on + strand, within LRK53_RS05770at 1341.840 kb on + strand, within LRK53_RS05770at 1341.840 kb on + strand, within LRK53_RS05770at 1341.840 kb on + strand, within LRK53_RS05770at 1341.840 kb on + strand, within LRK53_RS05770at 1341.840 kb on + strand, within LRK53_RS05770at 1341.840 kb on + strand, within LRK53_RS05770at 1341.841 kb on - strand, within LRK53_RS05770at 1341.841 kb on - strand, within LRK53_RS05770at 1341.841 kb on - strand, within LRK53_RS05770at 1341.841 kb on - strand, within LRK53_RS05770at 1341.841 kb on - strand, within LRK53_RS05770at 1341.841 kb on - strand, within LRK53_RS05770at 1341.841 kb on - strand, within LRK53_RS05770at 1341.841 kb on - strand, within LRK53_RS05770at 1341.841 kb on - strand, within LRK53_RS05770at 1342.009 kb on + strandat 1342.009 kb on + strandat 1342.009 kb on + strandat 1342.009 kb on + strandat 1342.010 kb on - strandat 1342.010 kb on - strandat 1342.010 kb on - strandat 1342.020 kb on + strandat 1342.020 kb on + strandat 1342.020 kb on + strandat 1342.020 kb on + strandat 1342.021 kb on - strandat 1342.021 kb on - strandat 1342.021 kb on - strandat 1342.021 kb on - strandat 1342.021 kb on - strandat 1342.021 kb on - strandat 1342.035 kb on + strandat 1342.035 kb on + strandat 1342.035 kb on + strandat 1342.035 kb on + strandat 1342.035 kb on + strandat 1342.035 kb on + strandat 1342.035 kb on + strandat 1342.035 kb on + strandat 1342.035 kb on + strandat 1342.035 kb on + strandat 1342.036 kb on - strandat 1342.036 kb on - strandat 1342.036 kb on - strandat 1342.036 kb on - strandat 1342.036 kb on - strandat 1342.036 kb on - strandat 1342.036 kb on - strandat 1342.036 kb on - strandat 1342.036 kb on - strandat 1342.089 kb on + strand, within LRK53_RS05775at 1342.090 kb on - strand, within LRK53_RS05775at 1342.090 kb on - strand, within LRK53_RS05775at 1342.090 kb on - strand, within LRK53_RS05775at 1342.090 kb on - strand, within LRK53_RS05775at 1342.090 kb on - strand, within LRK53_RS05775at 1342.090 kb on - strand, within LRK53_RS05775at 1342.090 kb on - strand, within LRK53_RS05775at 1342.332 kb on + strand, within LRK53_RS05775at 1342.332 kb on + strand, within LRK53_RS05775at 1342.332 kb on + strand, within LRK53_RS05775at 1342.332 kb on + strand, within LRK53_RS05775at 1342.332 kb on + strand, within LRK53_RS05775at 1342.333 kb on - strand, within LRK53_RS05775at 1342.333 kb on - strand, within LRK53_RS05775at 1342.333 kb on - strand, within LRK53_RS05775at 1342.333 kb on - strand, within LRK53_RS05775at 1342.333 kb on - strand, within LRK53_RS05775at 1342.333 kb on - strand, within LRK53_RS05775at 1342.333 kb on - strand, within LRK53_RS05775at 1342.368 kb on + strand, within LRK53_RS05775at 1342.368 kb on + strand, within LRK53_RS05775at 1342.368 kb on + strand, within LRK53_RS05775at 1342.368 kb on + strand, within LRK53_RS05775at 1342.368 kb on + strand, within LRK53_RS05775at 1342.369 kb on - strand, within LRK53_RS05775at 1342.369 kb on - strand, within LRK53_RS05775at 1342.377 kb on + strand, within LRK53_RS05775at 1342.377 kb on + strand, within LRK53_RS05775at 1342.377 kb on + strand, within LRK53_RS05775at 1342.377 kb on + strand, within LRK53_RS05775at 1342.378 kb on - strand, within LRK53_RS05775at 1342.389 kb on + strand, within LRK53_RS05775at 1342.389 kb on + strand, within LRK53_RS05775at 1342.389 kb on + strand, within LRK53_RS05775at 1342.390 kb on - strand, within LRK53_RS05775at 1342.390 kb on - strand, within LRK53_RS05775at 1342.390 kb on - strand, within LRK53_RS05775at 1342.390 kb on - strand, within LRK53_RS05775at 1342.390 kb on - strand, within LRK53_RS05775at 1342.430 kb on - strand, within LRK53_RS05775

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
remove
1,339,829 + LRK53_RS05755 0.79 -0.4
1,339,829 + LRK53_RS05755 0.79 +0.1
1,339,829 + LRK53_RS05755 0.79 +2.4
1,339,829 + LRK53_RS05755 0.79 +1.4
1,339,829 + LRK53_RS05755 0.79 -0.3
1,339,829 + LRK53_RS05755 0.79 -0.9
1,339,829 + LRK53_RS05755 0.79 +0.4
1,339,829 + LRK53_RS05755 0.79 +0.2
1,339,829 + LRK53_RS05755 0.79 +1.3
1,339,830 - LRK53_RS05755 0.79 +0.8
1,339,830 - LRK53_RS05755 0.79 -0.4
1,339,830 - LRK53_RS05755 0.79 -0.0
1,339,830 - LRK53_RS05755 0.79 +1.5
1,339,830 - LRK53_RS05755 0.79 +0.2
1,339,830 - LRK53_RS05755 0.79 -0.6
1,339,830 - LRK53_RS05755 0.79 +0.0
1,339,830 - LRK53_RS05755 0.79 -0.7
1,340,416 + LRK53_RS05760 0.48 -1.9
1,341,224 - LRK53_RS05765 0.71 +0.0
1,341,224 - LRK53_RS05765 0.71 +0.9
1,341,224 - LRK53_RS05765 0.71 +1.2
1,341,290 + LRK53_RS05765 0.80 +0.5
1,341,472 + +0.4
1,341,472 + -0.6
1,341,555 + +0.5
1,341,555 + -0.5
1,341,556 - -0.1
1,341,556 - +0.9
1,341,556 - -2.2
1,341,556 - -1.0
1,341,556 - +1.4
1,341,556 - +0.9
1,341,765 + LRK53_RS05770 0.47 +0.0
1,341,765 + LRK53_RS05770 0.47 -0.6
1,341,766 - LRK53_RS05770 0.47 -1.4
1,341,766 - LRK53_RS05770 0.47 -1.9
1,341,766 - LRK53_RS05770 0.47 +0.4
1,341,766 - LRK53_RS05770 0.47 -0.3
1,341,794 + LRK53_RS05770 0.56 -1.4
1,341,840 + LRK53_RS05770 0.70 -2.0
1,341,840 + LRK53_RS05770 0.70 +0.5
1,341,840 + LRK53_RS05770 0.70 +0.8
1,341,840 + LRK53_RS05770 0.70 +0.2
1,341,840 + LRK53_RS05770 0.70 +0.5
1,341,840 + LRK53_RS05770 0.70 -0.8
1,341,840 + LRK53_RS05770 0.70 -1.7
1,341,840 + LRK53_RS05770 0.70 +0.4
1,341,841 - LRK53_RS05770 0.71 +0.6
1,341,841 - LRK53_RS05770 0.71 -0.9
1,341,841 - LRK53_RS05770 0.71 -0.4
1,341,841 - LRK53_RS05770 0.71 -1.8
1,341,841 - LRK53_RS05770 0.71 +0.1
1,341,841 - LRK53_RS05770 0.71 -0.0
1,341,841 - LRK53_RS05770 0.71 -1.9
1,341,841 - LRK53_RS05770 0.71 +1.1
1,341,841 - LRK53_RS05770 0.71 +2.1
1,342,009 + -2.1
1,342,009 + +0.1
1,342,009 + +0.3
1,342,009 + -1.0
1,342,010 - -0.8
1,342,010 - +1.3
1,342,010 - -0.6
1,342,020 + -0.4
1,342,020 + -0.8
1,342,020 + +0.5
1,342,020 + -0.1
1,342,021 - +0.6
1,342,021 - -0.5
1,342,021 - -1.8
1,342,021 - +0.3
1,342,021 - -1.1
1,342,021 - -2.1
1,342,035 + +0.5
1,342,035 + -1.1
1,342,035 + -0.2
1,342,035 + +0.2
1,342,035 + -0.7
1,342,035 + -0.9
1,342,035 + -0.1
1,342,035 + -0.5
1,342,035 + -0.6
1,342,035 + -0.7
1,342,036 - -0.3
1,342,036 - +0.0
1,342,036 - +0.4
1,342,036 - -0.4
1,342,036 - -0.7
1,342,036 - -0.7
1,342,036 - -0.1
1,342,036 - -1.6
1,342,036 - -1.1
1,342,089 + LRK53_RS05775 0.11 -0.3
1,342,090 - LRK53_RS05775 0.11 +0.7
1,342,090 - LRK53_RS05775 0.11 -1.6
1,342,090 - LRK53_RS05775 0.11 -1.1
1,342,090 - LRK53_RS05775 0.11 -0.3
1,342,090 - LRK53_RS05775 0.11 +1.1
1,342,090 - LRK53_RS05775 0.11 -0.3
1,342,090 - LRK53_RS05775 0.11 -0.5
1,342,332 + LRK53_RS05775 0.28 +0.4
1,342,332 + LRK53_RS05775 0.28 -0.3
1,342,332 + LRK53_RS05775 0.28 -0.1
1,342,332 + LRK53_RS05775 0.28 +1.0
1,342,332 + LRK53_RS05775 0.28 -0.4
1,342,333 - LRK53_RS05775 0.28 +1.2
1,342,333 - LRK53_RS05775 0.28 +0.2
1,342,333 - LRK53_RS05775 0.28 +1.5
1,342,333 - LRK53_RS05775 0.28 -1.9
1,342,333 - LRK53_RS05775 0.28 +0.0
1,342,333 - LRK53_RS05775 0.28 -0.3
1,342,333 - LRK53_RS05775 0.28 +0.2
1,342,368 + LRK53_RS05775 0.31 -1.9
1,342,368 + LRK53_RS05775 0.31 -1.5
1,342,368 + LRK53_RS05775 0.31 +1.9
1,342,368 + LRK53_RS05775 0.31 -2.1
1,342,368 + LRK53_RS05775 0.31 -1.4
1,342,369 - LRK53_RS05775 0.31 +2.5
1,342,369 - LRK53_RS05775 0.31 +1.9
1,342,377 + LRK53_RS05775 0.32 -2.6
1,342,377 + LRK53_RS05775 0.32 -0.5
1,342,377 + LRK53_RS05775 0.32 +0.1
1,342,377 + LRK53_RS05775 0.32 -0.9
1,342,378 - LRK53_RS05775 0.32 +0.6
1,342,389 + LRK53_RS05775 0.33 -1.1
1,342,389 + LRK53_RS05775 0.33 -0.9
1,342,389 + LRK53_RS05775 0.33 -0.1
1,342,390 - LRK53_RS05775 0.33 -1.0
1,342,390 - LRK53_RS05775 0.33 -0.2
1,342,390 - LRK53_RS05775 0.33 -1.8
1,342,390 - LRK53_RS05775 0.33 -0.8
1,342,390 - LRK53_RS05775 0.33 -0.2
1,342,430 - LRK53_RS05775 0.36 -0.8

Or see this region's nucleotide sequence