Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS05755 and LRK53_RS05760 overlap by 4 nucleotides LRK53_RS05760 and LRK53_RS05765 are separated by 22 nucleotides LRK53_RS05765 and LRK53_RS05770 are separated by 179 nucleotides LRK53_RS05770 and LRK53_RS05775 are separated by 11 nucleotides
LRK53_RS05755: LRK53_RS05755 - chemotaxis protein CheB, at 1,338,520 to 1,340,175
_RS05755
LRK53_RS05760: LRK53_RS05760 - chemotaxis protein CheW, at 1,340,172 to 1,340,681
_RS05760
LRK53_RS05765: LRK53_RS05765 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 1,340,704 to 1,341,438
_RS05765
LRK53_RS05770: LRK53_RS05770 - hypothetical protein, at 1,341,618 to 1,341,932
_RS05770
LRK53_RS05775: LRK53_RS05775 - adenosylmethionine--8-amino-7-oxononanoate transaminase, at 1,341,944 to 1,343,308
_RS05775
Position (kb)
1340
1341
1342 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1339.829 kb on + strand, within LRK53_RS05755 at 1339.829 kb on + strand, within LRK53_RS05755 at 1339.829 kb on + strand, within LRK53_RS05755 at 1339.829 kb on + strand, within LRK53_RS05755 at 1339.829 kb on + strand, within LRK53_RS05755 at 1339.829 kb on + strand, within LRK53_RS05755 at 1339.829 kb on + strand, within LRK53_RS05755 at 1339.829 kb on + strand, within LRK53_RS05755 at 1339.829 kb on + strand, within LRK53_RS05755 at 1339.830 kb on - strand, within LRK53_RS05755 at 1339.830 kb on - strand, within LRK53_RS05755 at 1339.830 kb on - strand, within LRK53_RS05755 at 1339.830 kb on - strand, within LRK53_RS05755 at 1339.830 kb on - strand, within LRK53_RS05755 at 1339.830 kb on - strand, within LRK53_RS05755 at 1339.830 kb on - strand, within LRK53_RS05755 at 1339.830 kb on - strand, within LRK53_RS05755 at 1340.416 kb on + strand, within LRK53_RS05760 at 1341.224 kb on - strand, within LRK53_RS05765 at 1341.224 kb on - strand, within LRK53_RS05765 at 1341.224 kb on - strand, within LRK53_RS05765 at 1341.290 kb on + strand, within LRK53_RS05765 at 1341.472 kb on + strand at 1341.472 kb on + strand at 1341.555 kb on + strand at 1341.555 kb on + strand at 1341.556 kb on - strand at 1341.556 kb on - strand at 1341.556 kb on - strand at 1341.556 kb on - strand at 1341.556 kb on - strand at 1341.556 kb on - strand at 1341.765 kb on + strand, within LRK53_RS05770 at 1341.765 kb on + strand, within LRK53_RS05770 at 1341.766 kb on - strand, within LRK53_RS05770 at 1341.766 kb on - strand, within LRK53_RS05770 at 1341.766 kb on - strand, within LRK53_RS05770 at 1341.766 kb on - strand, within LRK53_RS05770 at 1341.794 kb on + strand, within LRK53_RS05770 at 1341.840 kb on + strand, within LRK53_RS05770 at 1341.840 kb on + strand, within LRK53_RS05770 at 1341.840 kb on + strand, within LRK53_RS05770 at 1341.840 kb on + strand, within LRK53_RS05770 at 1341.840 kb on + strand, within LRK53_RS05770 at 1341.840 kb on + strand, within LRK53_RS05770 at 1341.840 kb on + strand, within LRK53_RS05770 at 1341.840 kb on + strand, within LRK53_RS05770 at 1341.841 kb on - strand, within LRK53_RS05770 at 1341.841 kb on - strand, within LRK53_RS05770 at 1341.841 kb on - strand, within LRK53_RS05770 at 1341.841 kb on - strand, within LRK53_RS05770 at 1341.841 kb on - strand, within LRK53_RS05770 at 1341.841 kb on - strand, within LRK53_RS05770 at 1341.841 kb on - strand, within LRK53_RS05770 at 1341.841 kb on - strand, within LRK53_RS05770 at 1341.841 kb on - strand, within LRK53_RS05770 at 1342.009 kb on + strand at 1342.009 kb on + strand at 1342.009 kb on + strand at 1342.009 kb on + strand at 1342.010 kb on - strand at 1342.010 kb on - strand at 1342.010 kb on - strand at 1342.020 kb on + strand at 1342.020 kb on + strand at 1342.020 kb on + strand at 1342.020 kb on + strand at 1342.021 kb on - strand at 1342.021 kb on - strand at 1342.021 kb on - strand at 1342.021 kb on - strand at 1342.021 kb on - strand at 1342.021 kb on - strand at 1342.035 kb on + strand at 1342.035 kb on + strand at 1342.035 kb on + strand at 1342.035 kb on + strand at 1342.035 kb on + strand at 1342.035 kb on + strand at 1342.035 kb on + strand at 1342.035 kb on + strand at 1342.035 kb on + strand at 1342.035 kb on + strand at 1342.036 kb on - strand at 1342.036 kb on - strand at 1342.036 kb on - strand at 1342.036 kb on - strand at 1342.036 kb on - strand at 1342.036 kb on - strand at 1342.036 kb on - strand at 1342.036 kb on - strand at 1342.036 kb on - strand at 1342.089 kb on + strand, within LRK53_RS05775 at 1342.090 kb on - strand, within LRK53_RS05775 at 1342.090 kb on - strand, within LRK53_RS05775 at 1342.090 kb on - strand, within LRK53_RS05775 at 1342.090 kb on - strand, within LRK53_RS05775 at 1342.090 kb on - strand, within LRK53_RS05775 at 1342.090 kb on - strand, within LRK53_RS05775 at 1342.090 kb on - strand, within LRK53_RS05775 at 1342.332 kb on + strand, within LRK53_RS05775 at 1342.332 kb on + strand, within LRK53_RS05775 at 1342.332 kb on + strand, within LRK53_RS05775 at 1342.332 kb on + strand, within LRK53_RS05775 at 1342.332 kb on + strand, within LRK53_RS05775 at 1342.333 kb on - strand, within LRK53_RS05775 at 1342.333 kb on - strand, within LRK53_RS05775 at 1342.333 kb on - strand, within LRK53_RS05775 at 1342.333 kb on - strand, within LRK53_RS05775 at 1342.333 kb on - strand, within LRK53_RS05775 at 1342.333 kb on - strand, within LRK53_RS05775 at 1342.333 kb on - strand, within LRK53_RS05775 at 1342.368 kb on + strand, within LRK53_RS05775 at 1342.368 kb on + strand, within LRK53_RS05775 at 1342.368 kb on + strand, within LRK53_RS05775 at 1342.368 kb on + strand, within LRK53_RS05775 at 1342.368 kb on + strand, within LRK53_RS05775 at 1342.369 kb on - strand, within LRK53_RS05775 at 1342.369 kb on - strand, within LRK53_RS05775 at 1342.377 kb on + strand, within LRK53_RS05775 at 1342.377 kb on + strand, within LRK53_RS05775 at 1342.377 kb on + strand, within LRK53_RS05775 at 1342.377 kb on + strand, within LRK53_RS05775 at 1342.378 kb on - strand, within LRK53_RS05775 at 1342.389 kb on + strand, within LRK53_RS05775 at 1342.389 kb on + strand, within LRK53_RS05775 at 1342.389 kb on + strand, within LRK53_RS05775 at 1342.390 kb on - strand, within LRK53_RS05775 at 1342.390 kb on - strand, within LRK53_RS05775 at 1342.390 kb on - strand, within LRK53_RS05775 at 1342.390 kb on - strand, within LRK53_RS05775 at 1342.390 kb on - strand, within LRK53_RS05775 at 1342.430 kb on - strand, within LRK53_RS05775
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 1,339,829 + LRK53_RS05755 0.79 -0.4 1,339,829 + LRK53_RS05755 0.79 +0.1 1,339,829 + LRK53_RS05755 0.79 +2.4 1,339,829 + LRK53_RS05755 0.79 +1.4 1,339,829 + LRK53_RS05755 0.79 -0.3 1,339,829 + LRK53_RS05755 0.79 -0.9 1,339,829 + LRK53_RS05755 0.79 +0.4 1,339,829 + LRK53_RS05755 0.79 +0.2 1,339,829 + LRK53_RS05755 0.79 +1.3 1,339,830 - LRK53_RS05755 0.79 +0.8 1,339,830 - LRK53_RS05755 0.79 -0.4 1,339,830 - LRK53_RS05755 0.79 -0.0 1,339,830 - LRK53_RS05755 0.79 +1.5 1,339,830 - LRK53_RS05755 0.79 +0.2 1,339,830 - LRK53_RS05755 0.79 -0.6 1,339,830 - LRK53_RS05755 0.79 +0.0 1,339,830 - LRK53_RS05755 0.79 -0.7 1,340,416 + LRK53_RS05760 0.48 -1.9 1,341,224 - LRK53_RS05765 0.71 +0.0 1,341,224 - LRK53_RS05765 0.71 +0.9 1,341,224 - LRK53_RS05765 0.71 +1.2 1,341,290 + LRK53_RS05765 0.80 +0.5 1,341,472 + +0.4 1,341,472 + -0.6 1,341,555 + +0.5 1,341,555 + -0.5 1,341,556 - -0.1 1,341,556 - +0.9 1,341,556 - -2.2 1,341,556 - -1.0 1,341,556 - +1.4 1,341,556 - +0.9 1,341,765 + LRK53_RS05770 0.47 +0.0 1,341,765 + LRK53_RS05770 0.47 -0.6 1,341,766 - LRK53_RS05770 0.47 -1.4 1,341,766 - LRK53_RS05770 0.47 -1.9 1,341,766 - LRK53_RS05770 0.47 +0.4 1,341,766 - LRK53_RS05770 0.47 -0.3 1,341,794 + LRK53_RS05770 0.56 -1.4 1,341,840 + LRK53_RS05770 0.70 -2.0 1,341,840 + LRK53_RS05770 0.70 +0.5 1,341,840 + LRK53_RS05770 0.70 +0.8 1,341,840 + LRK53_RS05770 0.70 +0.2 1,341,840 + LRK53_RS05770 0.70 +0.5 1,341,840 + LRK53_RS05770 0.70 -0.8 1,341,840 + LRK53_RS05770 0.70 -1.7 1,341,840 + LRK53_RS05770 0.70 +0.4 1,341,841 - LRK53_RS05770 0.71 +0.6 1,341,841 - LRK53_RS05770 0.71 -0.9 1,341,841 - LRK53_RS05770 0.71 -0.4 1,341,841 - LRK53_RS05770 0.71 -1.8 1,341,841 - LRK53_RS05770 0.71 +0.1 1,341,841 - LRK53_RS05770 0.71 -0.0 1,341,841 - LRK53_RS05770 0.71 -1.9 1,341,841 - LRK53_RS05770 0.71 +1.1 1,341,841 - LRK53_RS05770 0.71 +2.1 1,342,009 + -2.1 1,342,009 + +0.1 1,342,009 + +0.3 1,342,009 + -1.0 1,342,010 - -0.8 1,342,010 - +1.3 1,342,010 - -0.6 1,342,020 + -0.4 1,342,020 + -0.8 1,342,020 + +0.5 1,342,020 + -0.1 1,342,021 - +0.6 1,342,021 - -0.5 1,342,021 - -1.8 1,342,021 - +0.3 1,342,021 - -1.1 1,342,021 - -2.1 1,342,035 + +0.5 1,342,035 + -1.1 1,342,035 + -0.2 1,342,035 + +0.2 1,342,035 + -0.7 1,342,035 + -0.9 1,342,035 + -0.1 1,342,035 + -0.5 1,342,035 + -0.6 1,342,035 + -0.7 1,342,036 - -0.3 1,342,036 - +0.0 1,342,036 - +0.4 1,342,036 - -0.4 1,342,036 - -0.7 1,342,036 - -0.7 1,342,036 - -0.1 1,342,036 - -1.6 1,342,036 - -1.1 1,342,089 + LRK53_RS05775 0.11 -0.3 1,342,090 - LRK53_RS05775 0.11 +0.7 1,342,090 - LRK53_RS05775 0.11 -1.6 1,342,090 - LRK53_RS05775 0.11 -1.1 1,342,090 - LRK53_RS05775 0.11 -0.3 1,342,090 - LRK53_RS05775 0.11 +1.1 1,342,090 - LRK53_RS05775 0.11 -0.3 1,342,090 - LRK53_RS05775 0.11 -0.5 1,342,332 + LRK53_RS05775 0.28 +0.4 1,342,332 + LRK53_RS05775 0.28 -0.3 1,342,332 + LRK53_RS05775 0.28 -0.1 1,342,332 + LRK53_RS05775 0.28 +1.0 1,342,332 + LRK53_RS05775 0.28 -0.4 1,342,333 - LRK53_RS05775 0.28 +1.2 1,342,333 - LRK53_RS05775 0.28 +0.2 1,342,333 - LRK53_RS05775 0.28 +1.5 1,342,333 - LRK53_RS05775 0.28 -1.9 1,342,333 - LRK53_RS05775 0.28 +0.0 1,342,333 - LRK53_RS05775 0.28 -0.3 1,342,333 - LRK53_RS05775 0.28 +0.2 1,342,368 + LRK53_RS05775 0.31 -1.9 1,342,368 + LRK53_RS05775 0.31 -1.5 1,342,368 + LRK53_RS05775 0.31 +1.9 1,342,368 + LRK53_RS05775 0.31 -2.1 1,342,368 + LRK53_RS05775 0.31 -1.4 1,342,369 - LRK53_RS05775 0.31 +2.5 1,342,369 - LRK53_RS05775 0.31 +1.9 1,342,377 + LRK53_RS05775 0.32 -2.6 1,342,377 + LRK53_RS05775 0.32 -0.5 1,342,377 + LRK53_RS05775 0.32 +0.1 1,342,377 + LRK53_RS05775 0.32 -0.9 1,342,378 - LRK53_RS05775 0.32 +0.6 1,342,389 + LRK53_RS05775 0.33 -1.1 1,342,389 + LRK53_RS05775 0.33 -0.9 1,342,389 + LRK53_RS05775 0.33 -0.1 1,342,390 - LRK53_RS05775 0.33 -1.0 1,342,390 - LRK53_RS05775 0.33 -0.2 1,342,390 - LRK53_RS05775 0.33 -1.8 1,342,390 - LRK53_RS05775 0.33 -0.8 1,342,390 - LRK53_RS05775 0.33 -0.2 1,342,430 - LRK53_RS05775 0.36 -0.8
Or see this region's nucleotide sequence