Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS05240

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS05230 and LRK53_RS05235 are separated by 32 nucleotidesLRK53_RS05235 and LRK53_RS05240 are separated by 93 nucleotidesLRK53_RS05240 and LRK53_RS05245 are separated by 163 nucleotides LRK53_RS05230: LRK53_RS05230 - DUF2007 domain-containing protein, at 1,226,077 to 1,226,349 _RS05230 LRK53_RS05235: LRK53_RS05235 - adenine phosphoribosyltransferase, at 1,226,382 to 1,226,900 _RS05235 LRK53_RS05240: LRK53_RS05240 - DUF3501 family protein, at 1,226,994 to 1,227,575 _RS05240 LRK53_RS05245: LRK53_RS05245 - Fe-S oxidoreductase, at 1,227,739 to 1,229,082 _RS05245 Position (kb) 1226 1227 1228Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1226.011 kb on - strandat 1226.011 kb on - strandat 1226.082 kb on + strandat 1226.082 kb on + strandat 1226.082 kb on + strandat 1226.082 kb on + strandat 1226.082 kb on + strandat 1226.082 kb on + strandat 1226.083 kb on - strandat 1226.083 kb on - strandat 1226.083 kb on - strandat 1226.083 kb on - strandat 1226.083 kb on - strandat 1226.089 kb on + strandat 1226.173 kb on + strand, within LRK53_RS05230at 1226.173 kb on + strand, within LRK53_RS05230at 1226.173 kb on + strand, within LRK53_RS05230at 1226.174 kb on - strand, within LRK53_RS05230at 1226.212 kb on + strand, within LRK53_RS05230at 1226.212 kb on + strand, within LRK53_RS05230at 1226.212 kb on + strand, within LRK53_RS05230at 1226.212 kb on + strand, within LRK53_RS05230at 1226.212 kb on + strand, within LRK53_RS05230at 1226.212 kb on + strand, within LRK53_RS05230at 1226.212 kb on + strand, within LRK53_RS05230at 1226.212 kb on + strand, within LRK53_RS05230at 1226.212 kb on + strand, within LRK53_RS05230at 1226.212 kb on + strand, within LRK53_RS05230at 1226.212 kb on + strand, within LRK53_RS05230at 1226.212 kb on + strand, within LRK53_RS05230at 1226.212 kb on + strand, within LRK53_RS05230at 1226.212 kb on + strand, within LRK53_RS05230at 1226.212 kb on + strand, within LRK53_RS05230at 1226.212 kb on + strand, within LRK53_RS05230at 1226.213 kb on - strand, within LRK53_RS05230at 1226.213 kb on - strand, within LRK53_RS05230at 1226.213 kb on - strand, within LRK53_RS05230at 1226.213 kb on - strand, within LRK53_RS05230at 1226.213 kb on - strand, within LRK53_RS05230at 1226.492 kb on + strand, within LRK53_RS05235at 1226.492 kb on + strand, within LRK53_RS05235at 1226.493 kb on - strand, within LRK53_RS05235at 1226.595 kb on + strand, within LRK53_RS05235at 1226.595 kb on + strand, within LRK53_RS05235at 1226.595 kb on + strand, within LRK53_RS05235at 1226.595 kb on + strand, within LRK53_RS05235at 1226.595 kb on + strand, within LRK53_RS05235at 1226.596 kb on - strand, within LRK53_RS05235at 1226.596 kb on - strand, within LRK53_RS05235at 1226.596 kb on - strand, within LRK53_RS05235at 1226.658 kb on + strand, within LRK53_RS05235at 1226.658 kb on + strand, within LRK53_RS05235at 1226.658 kb on + strand, within LRK53_RS05235at 1226.659 kb on - strand, within LRK53_RS05235at 1226.659 kb on - strand, within LRK53_RS05235at 1226.659 kb on - strand, within LRK53_RS05235at 1226.659 kb on - strand, within LRK53_RS05235at 1226.659 kb on - strand, within LRK53_RS05235at 1226.659 kb on - strand, within LRK53_RS05235at 1226.659 kb on - strand, within LRK53_RS05235at 1226.659 kb on - strand, within LRK53_RS05235at 1226.941 kb on + strandat 1226.941 kb on + strandat 1226.942 kb on - strandat 1226.942 kb on - strandat 1226.942 kb on - strandat 1226.942 kb on - strandat 1226.942 kb on - strandat 1227.258 kb on + strand, within LRK53_RS05240at 1227.259 kb on - strand, within LRK53_RS05240at 1227.259 kb on - strand, within LRK53_RS05240at 1227.259 kb on - strand, within LRK53_RS05240at 1227.293 kb on - strand, within LRK53_RS05240at 1227.346 kb on + strand, within LRK53_RS05240at 1227.346 kb on + strand, within LRK53_RS05240at 1227.346 kb on + strand, within LRK53_RS05240at 1227.347 kb on - strand, within LRK53_RS05240at 1227.347 kb on - strand, within LRK53_RS05240at 1227.347 kb on - strand, within LRK53_RS05240at 1227.347 kb on - strand, within LRK53_RS05240at 1227.347 kb on - strand, within LRK53_RS05240at 1227.347 kb on - strand, within LRK53_RS05240at 1227.347 kb on - strand, within LRK53_RS05240at 1227.418 kb on + strand, within LRK53_RS05240at 1227.419 kb on - strand, within LRK53_RS05240at 1227.532 kb on + strandat 1227.533 kb on - strandat 1227.540 kb on + strandat 1227.540 kb on + strandat 1227.541 kb on - strandat 1227.550 kb on - strandat 1227.550 kb on - strandat 1227.550 kb on - strandat 1227.575 kb on + strandat 1227.575 kb on + strandat 1227.576 kb on - strandat 1227.576 kb on - strandat 1227.576 kb on - strandat 1227.576 kb on - strandat 1227.626 kb on + strandat 1227.749 kb on + strandat 1227.911 kb on + strand, within LRK53_RS05245at 1227.911 kb on + strand, within LRK53_RS05245at 1227.911 kb on + strand, within LRK53_RS05245at 1227.912 kb on - strand, within LRK53_RS05245at 1227.912 kb on - strand, within LRK53_RS05245at 1227.912 kb on - strand, within LRK53_RS05245at 1227.912 kb on - strand, within LRK53_RS05245at 1227.932 kb on + strand, within LRK53_RS05245at 1227.932 kb on + strand, within LRK53_RS05245at 1227.932 kb on + strand, within LRK53_RS05245at 1227.932 kb on + strand, within LRK53_RS05245at 1227.932 kb on + strand, within LRK53_RS05245at 1227.932 kb on + strand, within LRK53_RS05245at 1227.932 kb on + strand, within LRK53_RS05245at 1227.932 kb on + strand, within LRK53_RS05245at 1227.933 kb on - strand, within LRK53_RS05245at 1227.933 kb on - strand, within LRK53_RS05245at 1228.122 kb on - strand, within LRK53_RS05245at 1228.122 kb on - strand, within LRK53_RS05245at 1228.122 kb on - strand, within LRK53_RS05245at 1228.122 kb on - strand, within LRK53_RS05245at 1228.289 kb on + strand, within LRK53_RS05245at 1228.289 kb on + strand, within LRK53_RS05245at 1228.289 kb on + strand, within LRK53_RS05245at 1228.289 kb on + strand, within LRK53_RS05245at 1228.289 kb on + strand, within LRK53_RS05245at 1228.289 kb on + strand, within LRK53_RS05245at 1228.289 kb on + strand, within LRK53_RS05245at 1228.290 kb on - strand, within LRK53_RS05245at 1228.290 kb on - strand, within LRK53_RS05245at 1228.290 kb on - strand, within LRK53_RS05245at 1228.290 kb on - strand, within LRK53_RS05245at 1228.290 kb on - strand, within LRK53_RS05245at 1228.290 kb on - strand, within LRK53_RS05245at 1228.290 kb on - strand, within LRK53_RS05245at 1228.433 kb on + strand, within LRK53_RS05245at 1228.433 kb on + strand, within LRK53_RS05245at 1228.538 kb on + strand, within LRK53_RS05245at 1228.538 kb on + strand, within LRK53_RS05245at 1228.538 kb on + strand, within LRK53_RS05245at 1228.539 kb on - strand, within LRK53_RS05245

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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1,226,011 - +0.1
1,226,011 - +0.9
1,226,082 + +0.9
1,226,082 + +0.7
1,226,082 + -0.4
1,226,082 + +0.5
1,226,082 + +1.3
1,226,082 + -0.2
1,226,083 - -3.1
1,226,083 - -0.8
1,226,083 - +0.8
1,226,083 - +0.2
1,226,083 - -1.4
1,226,089 + +0.6
1,226,173 + LRK53_RS05230 0.35 +0.8
1,226,173 + LRK53_RS05230 0.35 -0.3
1,226,173 + LRK53_RS05230 0.35 -0.3
1,226,174 - LRK53_RS05230 0.36 -0.2
1,226,212 + LRK53_RS05230 0.49 +0.4
1,226,212 + LRK53_RS05230 0.49 -0.0
1,226,212 + LRK53_RS05230 0.49 -0.9
1,226,212 + LRK53_RS05230 0.49 +0.3
1,226,212 + LRK53_RS05230 0.49 -2.8
1,226,212 + LRK53_RS05230 0.49 +0.5
1,226,212 + LRK53_RS05230 0.49 -1.5
1,226,212 + LRK53_RS05230 0.49 +0.3
1,226,212 + LRK53_RS05230 0.49 -0.4
1,226,212 + LRK53_RS05230 0.49 +0.6
1,226,212 + LRK53_RS05230 0.49 -1.2
1,226,212 + LRK53_RS05230 0.49 -0.3
1,226,212 + LRK53_RS05230 0.49 -0.3
1,226,212 + LRK53_RS05230 0.49 -1.3
1,226,212 + LRK53_RS05230 0.49 -0.5
1,226,212 + LRK53_RS05230 0.49 -2.0
1,226,213 - LRK53_RS05230 0.50 -2.6
1,226,213 - LRK53_RS05230 0.50 +0.6
1,226,213 - LRK53_RS05230 0.50 -1.4
1,226,213 - LRK53_RS05230 0.50 -0.8
1,226,213 - LRK53_RS05230 0.50 -0.6
1,226,492 + LRK53_RS05235 0.21 -1.4
1,226,492 + LRK53_RS05235 0.21 +0.3
1,226,493 - LRK53_RS05235 0.21 -0.6
1,226,595 + LRK53_RS05235 0.41 -0.1
1,226,595 + LRK53_RS05235 0.41 -1.4
1,226,595 + LRK53_RS05235 0.41 +0.2
1,226,595 + LRK53_RS05235 0.41 +0.9
1,226,595 + LRK53_RS05235 0.41 -1.3
1,226,596 - LRK53_RS05235 0.41 +1.9
1,226,596 - LRK53_RS05235 0.41 -2.1
1,226,596 - LRK53_RS05235 0.41 -0.3
1,226,658 + LRK53_RS05235 0.53 +1.2
1,226,658 + LRK53_RS05235 0.53 +1.3
1,226,658 + LRK53_RS05235 0.53 -2.9
1,226,659 - LRK53_RS05235 0.53 +0.8
1,226,659 - LRK53_RS05235 0.53 +0.5
1,226,659 - LRK53_RS05235 0.53 +0.4
1,226,659 - LRK53_RS05235 0.53 -0.5
1,226,659 - LRK53_RS05235 0.53 -0.8
1,226,659 - LRK53_RS05235 0.53 -2.4
1,226,659 - LRK53_RS05235 0.53 +0.6
1,226,659 - LRK53_RS05235 0.53 -0.6
1,226,941 + -0.7
1,226,941 + -1.0
1,226,942 - +0.0
1,226,942 - -0.3
1,226,942 - -0.9
1,226,942 - -1.9
1,226,942 - -0.6
1,227,258 + LRK53_RS05240 0.45 -0.2
1,227,259 - LRK53_RS05240 0.46 +1.9
1,227,259 - LRK53_RS05240 0.46 -0.3
1,227,259 - LRK53_RS05240 0.46 +0.2
1,227,293 - LRK53_RS05240 0.51 -2.0
1,227,346 + LRK53_RS05240 0.60 +2.2
1,227,346 + LRK53_RS05240 0.60 -0.2
1,227,346 + LRK53_RS05240 0.60 +0.1
1,227,347 - LRK53_RS05240 0.61 +1.4
1,227,347 - LRK53_RS05240 0.61 +1.1
1,227,347 - LRK53_RS05240 0.61 +0.5
1,227,347 - LRK53_RS05240 0.61 -0.7
1,227,347 - LRK53_RS05240 0.61 +0.9
1,227,347 - LRK53_RS05240 0.61 +0.7
1,227,347 - LRK53_RS05240 0.61 -2.1
1,227,418 + LRK53_RS05240 0.73 +0.4
1,227,419 - LRK53_RS05240 0.73 +0.3
1,227,532 + -0.1
1,227,533 - +0.2
1,227,540 + +0.2
1,227,540 + -1.1
1,227,541 - -1.4
1,227,550 - -2.2
1,227,550 - +1.7
1,227,550 - -0.6
1,227,575 + +0.5
1,227,575 + +1.4
1,227,576 - +0.4
1,227,576 - -0.3
1,227,576 - -0.1
1,227,576 - +1.2
1,227,626 + +0.4
1,227,749 + -0.9
1,227,911 + LRK53_RS05245 0.13 -0.5
1,227,911 + LRK53_RS05245 0.13 +2.1
1,227,911 + LRK53_RS05245 0.13 -0.1
1,227,912 - LRK53_RS05245 0.13 -1.4
1,227,912 - LRK53_RS05245 0.13 +0.3
1,227,912 - LRK53_RS05245 0.13 -1.7
1,227,912 - LRK53_RS05245 0.13 +0.2
1,227,932 + LRK53_RS05245 0.14 +0.0
1,227,932 + LRK53_RS05245 0.14 -0.9
1,227,932 + LRK53_RS05245 0.14 +0.4
1,227,932 + LRK53_RS05245 0.14 -1.6
1,227,932 + LRK53_RS05245 0.14 -1.2
1,227,932 + LRK53_RS05245 0.14 -0.9
1,227,932 + LRK53_RS05245 0.14 -1.1
1,227,932 + LRK53_RS05245 0.14 -0.4
1,227,933 - LRK53_RS05245 0.14 +0.5
1,227,933 - LRK53_RS05245 0.14 +1.3
1,228,122 - LRK53_RS05245 0.28 +0.8
1,228,122 - LRK53_RS05245 0.28 -2.9
1,228,122 - LRK53_RS05245 0.28 -0.8
1,228,122 - LRK53_RS05245 0.28 +1.1
1,228,289 + LRK53_RS05245 0.41 -1.7
1,228,289 + LRK53_RS05245 0.41 -2.3
1,228,289 + LRK53_RS05245 0.41 -3.2
1,228,289 + LRK53_RS05245 0.41 -0.4
1,228,289 + LRK53_RS05245 0.41 -0.7
1,228,289 + LRK53_RS05245 0.41 +0.8
1,228,289 + LRK53_RS05245 0.41 -0.3
1,228,290 - LRK53_RS05245 0.41 -0.5
1,228,290 - LRK53_RS05245 0.41 +0.7
1,228,290 - LRK53_RS05245 0.41 -1.4
1,228,290 - LRK53_RS05245 0.41 -0.6
1,228,290 - LRK53_RS05245 0.41 -1.5
1,228,290 - LRK53_RS05245 0.41 -0.0
1,228,290 - LRK53_RS05245 0.41 +0.8
1,228,433 + LRK53_RS05245 0.52 +0.5
1,228,433 + LRK53_RS05245 0.52 +1.8
1,228,538 + LRK53_RS05245 0.59 +0.7
1,228,538 + LRK53_RS05245 0.59 -0.7
1,228,538 + LRK53_RS05245 0.59 -0.5
1,228,539 - LRK53_RS05245 0.60 -1.9

Or see this region's nucleotide sequence