Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS04685

Experiment: Biofilm; Day2; SGW; pH7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS04675 and LRK53_RS04680 are separated by 13 nucleotidesLRK53_RS04680 and LRK53_RS04685 are separated by 94 nucleotidesLRK53_RS04685 and LRK53_RS04690 are separated by 139 nucleotides LRK53_RS04675: LRK53_RS04675 - aminopeptidase P family protein, at 1,089,882 to 1,090,544 _RS04675 LRK53_RS04680: LRK53_RS04680 - DUF1304 domain-containing protein, at 1,090,558 to 1,090,920 _RS04680 LRK53_RS04685: LRK53_RS04685 - 2OG-Fe dioxygenase family protein, at 1,091,015 to 1,091,737 _RS04685 LRK53_RS04690: LRK53_RS04690 - cysteine synthase A, at 1,091,877 to 1,092,890 _RS04690 Position (kb) 1091 1092Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1090.100 kb on - strand, within LRK53_RS04675at 1090.125 kb on + strand, within LRK53_RS04675at 1090.125 kb on + strand, within LRK53_RS04675at 1090.125 kb on + strand, within LRK53_RS04675at 1090.125 kb on + strand, within LRK53_RS04675at 1090.125 kb on + strand, within LRK53_RS04675at 1090.125 kb on + strand, within LRK53_RS04675at 1090.126 kb on - strand, within LRK53_RS04675at 1090.126 kb on - strand, within LRK53_RS04675at 1090.126 kb on - strand, within LRK53_RS04675at 1090.126 kb on - strand, within LRK53_RS04675at 1090.267 kb on + strand, within LRK53_RS04675at 1090.267 kb on + strand, within LRK53_RS04675at 1090.267 kb on + strand, within LRK53_RS04675at 1090.267 kb on + strand, within LRK53_RS04675at 1090.267 kb on + strand, within LRK53_RS04675at 1090.267 kb on + strand, within LRK53_RS04675at 1090.268 kb on - strand, within LRK53_RS04675at 1090.268 kb on - strand, within LRK53_RS04675at 1090.268 kb on - strand, within LRK53_RS04675at 1090.268 kb on - strand, within LRK53_RS04675at 1090.268 kb on - strand, within LRK53_RS04675at 1090.268 kb on - strand, within LRK53_RS04675at 1090.268 kb on - strand, within LRK53_RS04675at 1090.268 kb on - strand, within LRK53_RS04675at 1090.315 kb on + strand, within LRK53_RS04675at 1090.389 kb on + strand, within LRK53_RS04675at 1090.389 kb on + strand, within LRK53_RS04675at 1090.389 kb on + strand, within LRK53_RS04675at 1090.389 kb on + strand, within LRK53_RS04675at 1090.390 kb on - strand, within LRK53_RS04675at 1090.390 kb on - strand, within LRK53_RS04675at 1090.390 kb on - strand, within LRK53_RS04675at 1090.508 kb on - strandat 1090.644 kb on - strand, within LRK53_RS04680at 1090.644 kb on - strand, within LRK53_RS04680at 1090.644 kb on - strand, within LRK53_RS04680at 1090.754 kb on + strand, within LRK53_RS04680at 1090.754 kb on + strand, within LRK53_RS04680at 1090.945 kb on + strandat 1090.945 kb on + strandat 1090.945 kb on + strandat 1090.945 kb on + strandat 1090.945 kb on + strandat 1090.945 kb on + strandat 1090.945 kb on + strandat 1090.945 kb on + strandat 1090.945 kb on + strandat 1090.946 kb on - strandat 1090.946 kb on - strandat 1090.946 kb on - strandat 1090.946 kb on - strandat 1090.946 kb on - strandat 1090.946 kb on - strandat 1090.946 kb on - strandat 1090.946 kb on - strandat 1090.946 kb on - strandat 1090.955 kb on + strandat 1090.979 kb on + strandat 1090.979 kb on + strandat 1090.979 kb on + strandat 1090.979 kb on + strandat 1090.979 kb on + strandat 1090.979 kb on + strandat 1090.979 kb on + strandat 1090.980 kb on - strandat 1090.980 kb on - strandat 1090.980 kb on - strandat 1090.980 kb on - strandat 1091.016 kb on + strandat 1091.016 kb on + strandat 1091.016 kb on + strandat 1091.016 kb on + strandat 1091.016 kb on + strandat 1091.016 kb on + strandat 1091.017 kb on - strandat 1091.017 kb on - strandat 1091.017 kb on - strandat 1091.017 kb on - strandat 1091.017 kb on - strandat 1091.017 kb on - strandat 1091.238 kb on + strand, within LRK53_RS04685at 1091.239 kb on - strand, within LRK53_RS04685at 1091.239 kb on - strand, within LRK53_RS04685at 1091.466 kb on + strand, within LRK53_RS04685at 1091.466 kb on + strand, within LRK53_RS04685at 1091.466 kb on + strand, within LRK53_RS04685at 1091.466 kb on + strand, within LRK53_RS04685at 1091.466 kb on + strand, within LRK53_RS04685at 1091.466 kb on + strand, within LRK53_RS04685at 1091.467 kb on - strand, within LRK53_RS04685at 1091.467 kb on - strand, within LRK53_RS04685at 1091.467 kb on - strand, within LRK53_RS04685at 1091.467 kb on - strand, within LRK53_RS04685at 1091.467 kb on - strand, within LRK53_RS04685at 1091.577 kb on + strand, within LRK53_RS04685at 1091.577 kb on + strand, within LRK53_RS04685at 1091.577 kb on + strand, within LRK53_RS04685at 1091.577 kb on + strand, within LRK53_RS04685at 1091.577 kb on + strand, within LRK53_RS04685at 1091.577 kb on + strand, within LRK53_RS04685at 1091.577 kb on + strand, within LRK53_RS04685at 1091.577 kb on + strand, within LRK53_RS04685at 1091.577 kb on + strand, within LRK53_RS04685at 1091.577 kb on + strand, within LRK53_RS04685at 1091.578 kb on - strand, within LRK53_RS04685at 1091.578 kb on - strand, within LRK53_RS04685at 1091.578 kb on - strand, within LRK53_RS04685at 1091.578 kb on - strand, within LRK53_RS04685at 1091.578 kb on - strand, within LRK53_RS04685at 1091.743 kb on + strandat 1091.743 kb on + strandat 1091.743 kb on + strandat 1091.743 kb on + strandat 1091.744 kb on - strandat 1091.748 kb on + strandat 1091.782 kb on - strandat 1091.879 kb on - strandat 1091.959 kb on + strandat 1092.235 kb on + strand, within LRK53_RS04690at 1092.235 kb on + strand, within LRK53_RS04690at 1092.235 kb on + strand, within LRK53_RS04690at 1092.235 kb on + strand, within LRK53_RS04690at 1092.235 kb on + strand, within LRK53_RS04690at 1092.236 kb on - strand, within LRK53_RS04690at 1092.236 kb on - strand, within LRK53_RS04690at 1092.236 kb on - strand, within LRK53_RS04690at 1092.236 kb on - strand, within LRK53_RS04690at 1092.236 kb on - strand, within LRK53_RS04690at 1092.236 kb on - strand, within LRK53_RS04690at 1092.236 kb on - strand, within LRK53_RS04690at 1092.512 kb on - strand, within LRK53_RS04690at 1092.512 kb on - strand, within LRK53_RS04690at 1092.529 kb on + strand, within LRK53_RS04690at 1092.529 kb on + strand, within LRK53_RS04690at 1092.529 kb on + strand, within LRK53_RS04690at 1092.529 kb on + strand, within LRK53_RS04690at 1092.529 kb on + strand, within LRK53_RS04690at 1092.530 kb on - strand, within LRK53_RS04690at 1092.668 kb on + strand, within LRK53_RS04690

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
remove
1,090,100 - LRK53_RS04675 0.33 +1.9
1,090,125 + LRK53_RS04675 0.37 -0.1
1,090,125 + LRK53_RS04675 0.37 +1.5
1,090,125 + LRK53_RS04675 0.37 +0.2
1,090,125 + LRK53_RS04675 0.37 +0.7
1,090,125 + LRK53_RS04675 0.37 +2.2
1,090,125 + LRK53_RS04675 0.37 +0.9
1,090,126 - LRK53_RS04675 0.37 +0.1
1,090,126 - LRK53_RS04675 0.37 -1.5
1,090,126 - LRK53_RS04675 0.37 -0.6
1,090,126 - LRK53_RS04675 0.37 -0.2
1,090,267 + LRK53_RS04675 0.58 -0.9
1,090,267 + LRK53_RS04675 0.58 -3.3
1,090,267 + LRK53_RS04675 0.58 -0.3
1,090,267 + LRK53_RS04675 0.58 -0.8
1,090,267 + LRK53_RS04675 0.58 +0.7
1,090,267 + LRK53_RS04675 0.58 +0.7
1,090,268 - LRK53_RS04675 0.58 +0.7
1,090,268 - LRK53_RS04675 0.58 -0.5
1,090,268 - LRK53_RS04675 0.58 +2.9
1,090,268 - LRK53_RS04675 0.58 -0.1
1,090,268 - LRK53_RS04675 0.58 -0.2
1,090,268 - LRK53_RS04675 0.58 -0.9
1,090,268 - LRK53_RS04675 0.58 -1.8
1,090,268 - LRK53_RS04675 0.58 +0.1
1,090,315 + LRK53_RS04675 0.65 +0.5
1,090,389 + LRK53_RS04675 0.76 +0.4
1,090,389 + LRK53_RS04675 0.76 -1.9
1,090,389 + LRK53_RS04675 0.76 -0.3
1,090,389 + LRK53_RS04675 0.76 +2.0
1,090,390 - LRK53_RS04675 0.77 -0.5
1,090,390 - LRK53_RS04675 0.77 -1.2
1,090,390 - LRK53_RS04675 0.77 -0.2
1,090,508 - +0.6
1,090,644 - LRK53_RS04680 0.24 -0.4
1,090,644 - LRK53_RS04680 0.24 +0.1
1,090,644 - LRK53_RS04680 0.24 -2.2
1,090,754 + LRK53_RS04680 0.54 +1.4
1,090,754 + LRK53_RS04680 0.54 +1.0
1,090,945 + -0.5
1,090,945 + +0.7
1,090,945 + -0.2
1,090,945 + -0.5
1,090,945 + +2.1
1,090,945 + -2.4
1,090,945 + +1.2
1,090,945 + -1.5
1,090,945 + -0.7
1,090,946 - -0.2
1,090,946 - +1.0
1,090,946 - -1.0
1,090,946 - -1.8
1,090,946 - -0.5
1,090,946 - -0.0
1,090,946 - -0.1
1,090,946 - -0.4
1,090,946 - -1.0
1,090,955 + -0.6
1,090,979 + -1.1
1,090,979 + -1.0
1,090,979 + -0.5
1,090,979 + -0.7
1,090,979 + +0.1
1,090,979 + +0.4
1,090,979 + -2.2
1,090,980 - -0.5
1,090,980 - -1.6
1,090,980 - -1.4
1,090,980 - +1.7
1,091,016 + +0.4
1,091,016 + +0.0
1,091,016 + +0.8
1,091,016 + +2.1
1,091,016 + +0.0
1,091,016 + -0.4
1,091,017 - +0.1
1,091,017 - +0.4
1,091,017 - -1.1
1,091,017 - -1.2
1,091,017 - +2.3
1,091,017 - +1.5
1,091,238 + LRK53_RS04685 0.31 +2.2
1,091,239 - LRK53_RS04685 0.31 +0.2
1,091,239 - LRK53_RS04685 0.31 -0.8
1,091,466 + LRK53_RS04685 0.62 -0.6
1,091,466 + LRK53_RS04685 0.62 +0.5
1,091,466 + LRK53_RS04685 0.62 +1.5
1,091,466 + LRK53_RS04685 0.62 -0.6
1,091,466 + LRK53_RS04685 0.62 -0.1
1,091,466 + LRK53_RS04685 0.62 +0.5
1,091,467 - LRK53_RS04685 0.63 +0.2
1,091,467 - LRK53_RS04685 0.63 +0.4
1,091,467 - LRK53_RS04685 0.63 -0.5
1,091,467 - LRK53_RS04685 0.63 +0.1
1,091,467 - LRK53_RS04685 0.63 -1.3
1,091,577 + LRK53_RS04685 0.78 -0.5
1,091,577 + LRK53_RS04685 0.78 +0.6
1,091,577 + LRK53_RS04685 0.78 -0.3
1,091,577 + LRK53_RS04685 0.78 +0.0
1,091,577 + LRK53_RS04685 0.78 -0.6
1,091,577 + LRK53_RS04685 0.78 -0.2
1,091,577 + LRK53_RS04685 0.78 -0.3
1,091,577 + LRK53_RS04685 0.78 +0.1
1,091,577 + LRK53_RS04685 0.78 +1.8
1,091,577 + LRK53_RS04685 0.78 +1.4
1,091,578 - LRK53_RS04685 0.78 -0.3
1,091,578 - LRK53_RS04685 0.78 +1.5
1,091,578 - LRK53_RS04685 0.78 -2.8
1,091,578 - LRK53_RS04685 0.78 +2.3
1,091,578 - LRK53_RS04685 0.78 -0.0
1,091,743 + -1.4
1,091,743 + -0.5
1,091,743 + -0.9
1,091,743 + -0.7
1,091,744 - -0.8
1,091,748 + +0.4
1,091,782 - +1.1
1,091,879 - +0.5
1,091,959 + +1.0
1,092,235 + LRK53_RS04690 0.35 -0.4
1,092,235 + LRK53_RS04690 0.35 +1.1
1,092,235 + LRK53_RS04690 0.35 -0.6
1,092,235 + LRK53_RS04690 0.35 -0.2
1,092,235 + LRK53_RS04690 0.35 +1.9
1,092,236 - LRK53_RS04690 0.35 -0.9
1,092,236 - LRK53_RS04690 0.35 +0.5
1,092,236 - LRK53_RS04690 0.35 -0.0
1,092,236 - LRK53_RS04690 0.35 -2.1
1,092,236 - LRK53_RS04690 0.35 -2.4
1,092,236 - LRK53_RS04690 0.35 -0.8
1,092,236 - LRK53_RS04690 0.35 -1.5
1,092,512 - LRK53_RS04690 0.63 +0.8
1,092,512 - LRK53_RS04690 0.63 -0.4
1,092,529 + LRK53_RS04690 0.64 -0.8
1,092,529 + LRK53_RS04690 0.64 -0.2
1,092,529 + LRK53_RS04690 0.64 -1.4
1,092,529 + LRK53_RS04690 0.64 -0.8
1,092,529 + LRK53_RS04690 0.64 -1.0
1,092,530 - LRK53_RS04690 0.64 -0.5
1,092,668 + LRK53_RS04690 0.78 -1.4

Or see this region's nucleotide sequence