Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS04675 and LRK53_RS04680 are separated by 13 nucleotides LRK53_RS04680 and LRK53_RS04685 are separated by 94 nucleotides LRK53_RS04685 and LRK53_RS04690 are separated by 139 nucleotides
LRK53_RS04675: LRK53_RS04675 - aminopeptidase P family protein, at 1,089,882 to 1,090,544
_RS04675
LRK53_RS04680: LRK53_RS04680 - DUF1304 domain-containing protein, at 1,090,558 to 1,090,920
_RS04680
LRK53_RS04685: LRK53_RS04685 - 2OG-Fe dioxygenase family protein, at 1,091,015 to 1,091,737
_RS04685
LRK53_RS04690: LRK53_RS04690 - cysteine synthase A, at 1,091,877 to 1,092,890
_RS04690
Position (kb)
1091
1092 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1090.100 kb on - strand, within LRK53_RS04675 at 1090.125 kb on + strand, within LRK53_RS04675 at 1090.125 kb on + strand, within LRK53_RS04675 at 1090.125 kb on + strand, within LRK53_RS04675 at 1090.125 kb on + strand, within LRK53_RS04675 at 1090.125 kb on + strand, within LRK53_RS04675 at 1090.125 kb on + strand, within LRK53_RS04675 at 1090.126 kb on - strand, within LRK53_RS04675 at 1090.126 kb on - strand, within LRK53_RS04675 at 1090.126 kb on - strand, within LRK53_RS04675 at 1090.126 kb on - strand, within LRK53_RS04675 at 1090.267 kb on + strand, within LRK53_RS04675 at 1090.267 kb on + strand, within LRK53_RS04675 at 1090.267 kb on + strand, within LRK53_RS04675 at 1090.267 kb on + strand, within LRK53_RS04675 at 1090.267 kb on + strand, within LRK53_RS04675 at 1090.267 kb on + strand, within LRK53_RS04675 at 1090.268 kb on - strand, within LRK53_RS04675 at 1090.268 kb on - strand, within LRK53_RS04675 at 1090.268 kb on - strand, within LRK53_RS04675 at 1090.268 kb on - strand, within LRK53_RS04675 at 1090.268 kb on - strand, within LRK53_RS04675 at 1090.268 kb on - strand, within LRK53_RS04675 at 1090.268 kb on - strand, within LRK53_RS04675 at 1090.268 kb on - strand, within LRK53_RS04675 at 1090.315 kb on + strand, within LRK53_RS04675 at 1090.389 kb on + strand, within LRK53_RS04675 at 1090.389 kb on + strand, within LRK53_RS04675 at 1090.389 kb on + strand, within LRK53_RS04675 at 1090.389 kb on + strand, within LRK53_RS04675 at 1090.390 kb on - strand, within LRK53_RS04675 at 1090.390 kb on - strand, within LRK53_RS04675 at 1090.390 kb on - strand, within LRK53_RS04675 at 1090.508 kb on - strand at 1090.644 kb on - strand, within LRK53_RS04680 at 1090.644 kb on - strand, within LRK53_RS04680 at 1090.644 kb on - strand, within LRK53_RS04680 at 1090.754 kb on + strand, within LRK53_RS04680 at 1090.754 kb on + strand, within LRK53_RS04680 at 1090.945 kb on + strand at 1090.945 kb on + strand at 1090.945 kb on + strand at 1090.945 kb on + strand at 1090.945 kb on + strand at 1090.945 kb on + strand at 1090.945 kb on + strand at 1090.945 kb on + strand at 1090.945 kb on + strand at 1090.946 kb on - strand at 1090.946 kb on - strand at 1090.946 kb on - strand at 1090.946 kb on - strand at 1090.946 kb on - strand at 1090.946 kb on - strand at 1090.946 kb on - strand at 1090.946 kb on - strand at 1090.946 kb on - strand at 1090.955 kb on + strand at 1090.979 kb on + strand at 1090.979 kb on + strand at 1090.979 kb on + strand at 1090.979 kb on + strand at 1090.979 kb on + strand at 1090.979 kb on + strand at 1090.979 kb on + strand at 1090.980 kb on - strand at 1090.980 kb on - strand at 1090.980 kb on - strand at 1090.980 kb on - strand at 1091.016 kb on + strand at 1091.016 kb on + strand at 1091.016 kb on + strand at 1091.016 kb on + strand at 1091.016 kb on + strand at 1091.016 kb on + strand at 1091.017 kb on - strand at 1091.017 kb on - strand at 1091.017 kb on - strand at 1091.017 kb on - strand at 1091.017 kb on - strand at 1091.017 kb on - strand at 1091.238 kb on + strand, within LRK53_RS04685 at 1091.239 kb on - strand, within LRK53_RS04685 at 1091.239 kb on - strand, within LRK53_RS04685 at 1091.466 kb on + strand, within LRK53_RS04685 at 1091.466 kb on + strand, within LRK53_RS04685 at 1091.466 kb on + strand, within LRK53_RS04685 at 1091.466 kb on + strand, within LRK53_RS04685 at 1091.466 kb on + strand, within LRK53_RS04685 at 1091.466 kb on + strand, within LRK53_RS04685 at 1091.467 kb on - strand, within LRK53_RS04685 at 1091.467 kb on - strand, within LRK53_RS04685 at 1091.467 kb on - strand, within LRK53_RS04685 at 1091.467 kb on - strand, within LRK53_RS04685 at 1091.467 kb on - strand, within LRK53_RS04685 at 1091.577 kb on + strand, within LRK53_RS04685 at 1091.577 kb on + strand, within LRK53_RS04685 at 1091.577 kb on + strand, within LRK53_RS04685 at 1091.577 kb on + strand, within LRK53_RS04685 at 1091.577 kb on + strand, within LRK53_RS04685 at 1091.577 kb on + strand, within LRK53_RS04685 at 1091.577 kb on + strand, within LRK53_RS04685 at 1091.577 kb on + strand, within LRK53_RS04685 at 1091.577 kb on + strand, within LRK53_RS04685 at 1091.577 kb on + strand, within LRK53_RS04685 at 1091.578 kb on - strand, within LRK53_RS04685 at 1091.578 kb on - strand, within LRK53_RS04685 at 1091.578 kb on - strand, within LRK53_RS04685 at 1091.578 kb on - strand, within LRK53_RS04685 at 1091.578 kb on - strand, within LRK53_RS04685 at 1091.743 kb on + strand at 1091.743 kb on + strand at 1091.743 kb on + strand at 1091.743 kb on + strand at 1091.744 kb on - strand at 1091.748 kb on + strand at 1091.782 kb on - strand at 1091.879 kb on - strand at 1091.959 kb on + strand at 1092.235 kb on + strand, within LRK53_RS04690 at 1092.235 kb on + strand, within LRK53_RS04690 at 1092.235 kb on + strand, within LRK53_RS04690 at 1092.235 kb on + strand, within LRK53_RS04690 at 1092.235 kb on + strand, within LRK53_RS04690 at 1092.236 kb on - strand, within LRK53_RS04690 at 1092.236 kb on - strand, within LRK53_RS04690 at 1092.236 kb on - strand, within LRK53_RS04690 at 1092.236 kb on - strand, within LRK53_RS04690 at 1092.236 kb on - strand, within LRK53_RS04690 at 1092.236 kb on - strand, within LRK53_RS04690 at 1092.236 kb on - strand, within LRK53_RS04690 at 1092.512 kb on - strand, within LRK53_RS04690 at 1092.512 kb on - strand, within LRK53_RS04690 at 1092.529 kb on + strand, within LRK53_RS04690 at 1092.529 kb on + strand, within LRK53_RS04690 at 1092.529 kb on + strand, within LRK53_RS04690 at 1092.529 kb on + strand, within LRK53_RS04690 at 1092.529 kb on + strand, within LRK53_RS04690 at 1092.530 kb on - strand, within LRK53_RS04690 at 1092.668 kb on + strand, within LRK53_RS04690
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 1,090,100 - LRK53_RS04675 0.33 +1.9 1,090,125 + LRK53_RS04675 0.37 -0.1 1,090,125 + LRK53_RS04675 0.37 +1.5 1,090,125 + LRK53_RS04675 0.37 +0.2 1,090,125 + LRK53_RS04675 0.37 +0.7 1,090,125 + LRK53_RS04675 0.37 +2.2 1,090,125 + LRK53_RS04675 0.37 +0.9 1,090,126 - LRK53_RS04675 0.37 +0.1 1,090,126 - LRK53_RS04675 0.37 -1.5 1,090,126 - LRK53_RS04675 0.37 -0.6 1,090,126 - LRK53_RS04675 0.37 -0.2 1,090,267 + LRK53_RS04675 0.58 -0.9 1,090,267 + LRK53_RS04675 0.58 -3.3 1,090,267 + LRK53_RS04675 0.58 -0.3 1,090,267 + LRK53_RS04675 0.58 -0.8 1,090,267 + LRK53_RS04675 0.58 +0.7 1,090,267 + LRK53_RS04675 0.58 +0.7 1,090,268 - LRK53_RS04675 0.58 +0.7 1,090,268 - LRK53_RS04675 0.58 -0.5 1,090,268 - LRK53_RS04675 0.58 +2.9 1,090,268 - LRK53_RS04675 0.58 -0.1 1,090,268 - LRK53_RS04675 0.58 -0.2 1,090,268 - LRK53_RS04675 0.58 -0.9 1,090,268 - LRK53_RS04675 0.58 -1.8 1,090,268 - LRK53_RS04675 0.58 +0.1 1,090,315 + LRK53_RS04675 0.65 +0.5 1,090,389 + LRK53_RS04675 0.76 +0.4 1,090,389 + LRK53_RS04675 0.76 -1.9 1,090,389 + LRK53_RS04675 0.76 -0.3 1,090,389 + LRK53_RS04675 0.76 +2.0 1,090,390 - LRK53_RS04675 0.77 -0.5 1,090,390 - LRK53_RS04675 0.77 -1.2 1,090,390 - LRK53_RS04675 0.77 -0.2 1,090,508 - +0.6 1,090,644 - LRK53_RS04680 0.24 -0.4 1,090,644 - LRK53_RS04680 0.24 +0.1 1,090,644 - LRK53_RS04680 0.24 -2.2 1,090,754 + LRK53_RS04680 0.54 +1.4 1,090,754 + LRK53_RS04680 0.54 +1.0 1,090,945 + -0.5 1,090,945 + +0.7 1,090,945 + -0.2 1,090,945 + -0.5 1,090,945 + +2.1 1,090,945 + -2.4 1,090,945 + +1.2 1,090,945 + -1.5 1,090,945 + -0.7 1,090,946 - -0.2 1,090,946 - +1.0 1,090,946 - -1.0 1,090,946 - -1.8 1,090,946 - -0.5 1,090,946 - -0.0 1,090,946 - -0.1 1,090,946 - -0.4 1,090,946 - -1.0 1,090,955 + -0.6 1,090,979 + -1.1 1,090,979 + -1.0 1,090,979 + -0.5 1,090,979 + -0.7 1,090,979 + +0.1 1,090,979 + +0.4 1,090,979 + -2.2 1,090,980 - -0.5 1,090,980 - -1.6 1,090,980 - -1.4 1,090,980 - +1.7 1,091,016 + +0.4 1,091,016 + +0.0 1,091,016 + +0.8 1,091,016 + +2.1 1,091,016 + +0.0 1,091,016 + -0.4 1,091,017 - +0.1 1,091,017 - +0.4 1,091,017 - -1.1 1,091,017 - -1.2 1,091,017 - +2.3 1,091,017 - +1.5 1,091,238 + LRK53_RS04685 0.31 +2.2 1,091,239 - LRK53_RS04685 0.31 +0.2 1,091,239 - LRK53_RS04685 0.31 -0.8 1,091,466 + LRK53_RS04685 0.62 -0.6 1,091,466 + LRK53_RS04685 0.62 +0.5 1,091,466 + LRK53_RS04685 0.62 +1.5 1,091,466 + LRK53_RS04685 0.62 -0.6 1,091,466 + LRK53_RS04685 0.62 -0.1 1,091,466 + LRK53_RS04685 0.62 +0.5 1,091,467 - LRK53_RS04685 0.63 +0.2 1,091,467 - LRK53_RS04685 0.63 +0.4 1,091,467 - LRK53_RS04685 0.63 -0.5 1,091,467 - LRK53_RS04685 0.63 +0.1 1,091,467 - LRK53_RS04685 0.63 -1.3 1,091,577 + LRK53_RS04685 0.78 -0.5 1,091,577 + LRK53_RS04685 0.78 +0.6 1,091,577 + LRK53_RS04685 0.78 -0.3 1,091,577 + LRK53_RS04685 0.78 +0.0 1,091,577 + LRK53_RS04685 0.78 -0.6 1,091,577 + LRK53_RS04685 0.78 -0.2 1,091,577 + LRK53_RS04685 0.78 -0.3 1,091,577 + LRK53_RS04685 0.78 +0.1 1,091,577 + LRK53_RS04685 0.78 +1.8 1,091,577 + LRK53_RS04685 0.78 +1.4 1,091,578 - LRK53_RS04685 0.78 -0.3 1,091,578 - LRK53_RS04685 0.78 +1.5 1,091,578 - LRK53_RS04685 0.78 -2.8 1,091,578 - LRK53_RS04685 0.78 +2.3 1,091,578 - LRK53_RS04685 0.78 -0.0 1,091,743 + -1.4 1,091,743 + -0.5 1,091,743 + -0.9 1,091,743 + -0.7 1,091,744 - -0.8 1,091,748 + +0.4 1,091,782 - +1.1 1,091,879 - +0.5 1,091,959 + +1.0 1,092,235 + LRK53_RS04690 0.35 -0.4 1,092,235 + LRK53_RS04690 0.35 +1.1 1,092,235 + LRK53_RS04690 0.35 -0.6 1,092,235 + LRK53_RS04690 0.35 -0.2 1,092,235 + LRK53_RS04690 0.35 +1.9 1,092,236 - LRK53_RS04690 0.35 -0.9 1,092,236 - LRK53_RS04690 0.35 +0.5 1,092,236 - LRK53_RS04690 0.35 -0.0 1,092,236 - LRK53_RS04690 0.35 -2.1 1,092,236 - LRK53_RS04690 0.35 -2.4 1,092,236 - LRK53_RS04690 0.35 -0.8 1,092,236 - LRK53_RS04690 0.35 -1.5 1,092,512 - LRK53_RS04690 0.63 +0.8 1,092,512 - LRK53_RS04690 0.63 -0.4 1,092,529 + LRK53_RS04690 0.64 -0.8 1,092,529 + LRK53_RS04690 0.64 -0.2 1,092,529 + LRK53_RS04690 0.64 -1.4 1,092,529 + LRK53_RS04690 0.64 -0.8 1,092,529 + LRK53_RS04690 0.64 -1.0 1,092,530 - LRK53_RS04690 0.64 -0.5 1,092,668 + LRK53_RS04690 0.78 -1.4
Or see this region's nucleotide sequence