Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS04440

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS04435 and LRK53_RS04440 are separated by 116 nucleotidesLRK53_RS04440 and LRK53_RS04445 are separated by 111 nucleotides LRK53_RS04435: LRK53_RS04435 - electron transfer flavoprotein subunit alpha/FixB family protein, at 1,030,551 to 1,031,495 _RS04435 LRK53_RS04440: LRK53_RS04440 - electron transfer flavoprotein subunit beta/FixA family protein, at 1,031,612 to 1,032,358 _RS04440 LRK53_RS04445: LRK53_RS04445 - glycoside hydrolase family 99-like domain-containing protein, at 1,032,470 to 1,034,530 _RS04445 Position (kb) 1031 1032 1033Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1030.724 kb on - strand, within LRK53_RS04435at 1030.724 kb on - strand, within LRK53_RS04435at 1030.724 kb on - strand, within LRK53_RS04435at 1030.724 kb on - strand, within LRK53_RS04435at 1030.724 kb on - strand, within LRK53_RS04435at 1030.724 kb on - strand, within LRK53_RS04435at 1030.724 kb on - strand, within LRK53_RS04435at 1030.724 kb on - strand, within LRK53_RS04435at 1030.724 kb on - strand, within LRK53_RS04435at 1030.724 kb on - strand, within LRK53_RS04435at 1030.724 kb on - strand, within LRK53_RS04435at 1030.724 kb on - strand, within LRK53_RS04435at 1030.724 kb on - strand, within LRK53_RS04435at 1030.724 kb on - strand, within LRK53_RS04435at 1030.724 kb on - strand, within LRK53_RS04435at 1030.724 kb on - strand, within LRK53_RS04435at 1030.724 kb on - strand, within LRK53_RS04435at 1030.724 kb on - strand, within LRK53_RS04435at 1030.724 kb on - strand, within LRK53_RS04435at 1030.724 kb on - strand, within LRK53_RS04435at 1030.724 kb on - strand, within LRK53_RS04435at 1030.724 kb on - strand, within LRK53_RS04435at 1030.780 kb on + strand, within LRK53_RS04435at 1030.781 kb on - strand, within LRK53_RS04435at 1030.781 kb on - strand, within LRK53_RS04435at 1030.781 kb on - strand, within LRK53_RS04435at 1030.958 kb on + strand, within LRK53_RS04435at 1030.959 kb on - strand, within LRK53_RS04435at 1030.959 kb on - strand, within LRK53_RS04435at 1031.107 kb on + strand, within LRK53_RS04435at 1031.107 kb on + strand, within LRK53_RS04435at 1031.108 kb on - strand, within LRK53_RS04435at 1031.108 kb on - strand, within LRK53_RS04435at 1031.108 kb on - strand, within LRK53_RS04435at 1031.108 kb on - strand, within LRK53_RS04435at 1031.108 kb on - strand, within LRK53_RS04435at 1031.157 kb on + strand, within LRK53_RS04435at 1031.157 kb on + strand, within LRK53_RS04435at 1031.157 kb on + strand, within LRK53_RS04435at 1031.158 kb on - strand, within LRK53_RS04435at 1031.158 kb on - strand, within LRK53_RS04435at 1031.158 kb on - strand, within LRK53_RS04435at 1031.158 kb on - strand, within LRK53_RS04435at 1031.240 kb on - strand, within LRK53_RS04435at 1031.240 kb on - strand, within LRK53_RS04435at 1031.613 kb on + strandat 1031.613 kb on + strandat 1031.613 kb on + strandat 1031.613 kb on + strandat 1031.613 kb on + strandat 1031.613 kb on + strandat 1031.613 kb on + strandat 1031.700 kb on + strand, within LRK53_RS04440at 1031.700 kb on + strand, within LRK53_RS04440at 1031.701 kb on - strand, within LRK53_RS04440at 1031.701 kb on - strand, within LRK53_RS04440at 1031.701 kb on - strand, within LRK53_RS04440at 1031.701 kb on - strand, within LRK53_RS04440at 1031.701 kb on - strand, within LRK53_RS04440at 1031.701 kb on - strand, within LRK53_RS04440at 1032.321 kb on + strandat 1032.321 kb on + strandat 1032.321 kb on + strandat 1032.321 kb on + strandat 1032.321 kb on + strandat 1032.321 kb on + strandat 1032.321 kb on + strandat 1032.321 kb on + strandat 1032.321 kb on + strandat 1032.322 kb on - strandat 1032.322 kb on - strandat 1032.322 kb on - strandat 1032.322 kb on - strandat 1032.322 kb on - strandat 1032.322 kb on - strandat 1032.322 kb on - strandat 1032.340 kb on - strandat 1032.340 kb on - strandat 1032.432 kb on + strandat 1032.433 kb on - strandat 1032.795 kb on + strand, within LRK53_RS04445at 1032.795 kb on + strand, within LRK53_RS04445at 1032.972 kb on - strand, within LRK53_RS04445

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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1,030,724 - LRK53_RS04435 0.18 -0.2
1,030,724 - LRK53_RS04435 0.18 +0.6
1,030,724 - LRK53_RS04435 0.18 -0.6
1,030,724 - LRK53_RS04435 0.18 -0.0
1,030,724 - LRK53_RS04435 0.18 +1.2
1,030,724 - LRK53_RS04435 0.18 -0.1
1,030,724 - LRK53_RS04435 0.18 -1.6
1,030,724 - LRK53_RS04435 0.18 +0.4
1,030,724 - LRK53_RS04435 0.18 +1.4
1,030,724 - LRK53_RS04435 0.18 -0.7
1,030,724 - LRK53_RS04435 0.18 +2.6
1,030,724 - LRK53_RS04435 0.18 +0.5
1,030,724 - LRK53_RS04435 0.18 +0.0
1,030,724 - LRK53_RS04435 0.18 -2.6
1,030,724 - LRK53_RS04435 0.18 +0.8
1,030,724 - LRK53_RS04435 0.18 +1.2
1,030,724 - LRK53_RS04435 0.18 +0.1
1,030,724 - LRK53_RS04435 0.18 +3.0
1,030,724 - LRK53_RS04435 0.18 -2.1
1,030,724 - LRK53_RS04435 0.18 +0.4
1,030,724 - LRK53_RS04435 0.18 -0.0
1,030,724 - LRK53_RS04435 0.18 -1.4
1,030,780 + LRK53_RS04435 0.24 +0.3
1,030,781 - LRK53_RS04435 0.24 +0.8
1,030,781 - LRK53_RS04435 0.24 -0.0
1,030,781 - LRK53_RS04435 0.24 +0.9
1,030,958 + LRK53_RS04435 0.43 -2.2
1,030,959 - LRK53_RS04435 0.43 -0.2
1,030,959 - LRK53_RS04435 0.43 +1.8
1,031,107 + LRK53_RS04435 0.59 -1.2
1,031,107 + LRK53_RS04435 0.59 +0.4
1,031,108 - LRK53_RS04435 0.59 +2.0
1,031,108 - LRK53_RS04435 0.59 -0.4
1,031,108 - LRK53_RS04435 0.59 +1.1
1,031,108 - LRK53_RS04435 0.59 -0.2
1,031,108 - LRK53_RS04435 0.59 +0.0
1,031,157 + LRK53_RS04435 0.64 -0.1
1,031,157 + LRK53_RS04435 0.64 -1.0
1,031,157 + LRK53_RS04435 0.64 -0.4
1,031,158 - LRK53_RS04435 0.64 +0.0
1,031,158 - LRK53_RS04435 0.64 +0.3
1,031,158 - LRK53_RS04435 0.64 +0.5
1,031,158 - LRK53_RS04435 0.64 -1.3
1,031,240 - LRK53_RS04435 0.73 -1.3
1,031,240 - LRK53_RS04435 0.73 +0.1
1,031,613 + +0.1
1,031,613 + +0.8
1,031,613 + -2.7
1,031,613 + +0.4
1,031,613 + +1.2
1,031,613 + -1.6
1,031,613 + +1.0
1,031,700 + LRK53_RS04440 0.12 -0.2
1,031,700 + LRK53_RS04440 0.12 -0.1
1,031,701 - LRK53_RS04440 0.12 +0.6
1,031,701 - LRK53_RS04440 0.12 +0.2
1,031,701 - LRK53_RS04440 0.12 +1.8
1,031,701 - LRK53_RS04440 0.12 +0.4
1,031,701 - LRK53_RS04440 0.12 +0.3
1,031,701 - LRK53_RS04440 0.12 +0.1
1,032,321 + -0.4
1,032,321 + -1.4
1,032,321 + +0.2
1,032,321 + +1.2
1,032,321 + +0.4
1,032,321 + -0.7
1,032,321 + -0.2
1,032,321 + +0.8
1,032,321 + -2.0
1,032,322 - -1.3
1,032,322 - -1.8
1,032,322 - -2.6
1,032,322 - +0.8
1,032,322 - -0.7
1,032,322 - +1.4
1,032,322 - -0.6
1,032,340 - +0.6
1,032,340 - -1.8
1,032,432 + -0.1
1,032,433 - +0.1
1,032,795 + LRK53_RS04445 0.16 -0.8
1,032,795 + LRK53_RS04445 0.16 -0.0
1,032,972 - LRK53_RS04445 0.24 -1.8

Or see this region's nucleotide sequence