Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS04265 and LRK53_RS04270 are separated by 127 nucleotides LRK53_RS04270 and LRK53_RS04275 overlap by 4 nucleotides LRK53_RS04275 and LRK53_RS04280 are separated by 133 nucleotides LRK53_RS04280 and LRK53_RS04285 overlap by 1 nucleotides
LRK53_RS04265: LRK53_RS04265 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 993,623 to 994,519
_RS04265
LRK53_RS04270: LRK53_RS04270 - c-type cytochrome, at 994,647 to 994,955
_RS04270
LRK53_RS04275: LRK53_RS04275 - co-chaperone DjlA, at 994,952 to 995,758
_RS04275
LRK53_RS04280: LRK53_RS04280 - HAD hydrolase-like protein, at 995,892 to 996,530
_RS04280
LRK53_RS04285: LRK53_RS04285 - phosphoglycerate kinase, at 996,530 to 997,714
_RS04285
Position (kb) 994
995
996 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 994.143 kb on + strand, within LRK53_RS04265 at 994.144 kb on - strand, within LRK53_RS04265 at 994.171 kb on - strand, within LRK53_RS04265 at 994.171 kb on - strand, within LRK53_RS04265 at 994.236 kb on + strand, within LRK53_RS04265 at 994.236 kb on + strand, within LRK53_RS04265 at 994.236 kb on + strand, within LRK53_RS04265 at 994.236 kb on + strand, within LRK53_RS04265 at 994.236 kb on + strand, within LRK53_RS04265 at 994.236 kb on + strand, within LRK53_RS04265 at 994.236 kb on + strand, within LRK53_RS04265 at 994.236 kb on + strand, within LRK53_RS04265 at 994.236 kb on + strand, within LRK53_RS04265 at 994.237 kb on - strand, within LRK53_RS04265 at 994.237 kb on - strand, within LRK53_RS04265 at 994.237 kb on - strand, within LRK53_RS04265 at 994.237 kb on - strand, within LRK53_RS04265 at 994.446 kb on + strand at 994.447 kb on - strand at 994.447 kb on - strand at 994.448 kb on + strand at 994.448 kb on + strand at 994.448 kb on + strand at 994.448 kb on + strand at 994.448 kb on + strand at 994.448 kb on + strand at 994.448 kb on + strand at 994.449 kb on - strand at 994.449 kb on - strand at 994.449 kb on - strand at 994.449 kb on - strand at 994.449 kb on - strand at 994.449 kb on - strand at 994.449 kb on - strand at 994.449 kb on - strand at 994.449 kb on - strand at 994.449 kb on - strand at 994.556 kb on + strand at 994.556 kb on + strand at 994.657 kb on + strand at 994.657 kb on + strand at 994.658 kb on - strand at 994.658 kb on - strand at 994.812 kb on + strand, within LRK53_RS04270 at 994.812 kb on + strand, within LRK53_RS04270 at 994.813 kb on - strand, within LRK53_RS04270 at 994.813 kb on - strand, within LRK53_RS04270 at 994.813 kb on - strand, within LRK53_RS04270 at 994.923 kb on + strand, within LRK53_RS04270 at 994.923 kb on + strand, within LRK53_RS04270 at 994.923 kb on + strand, within LRK53_RS04270 at 994.924 kb on - strand, within LRK53_RS04270 at 994.924 kb on - strand, within LRK53_RS04270 at 994.924 kb on - strand, within LRK53_RS04270 at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 995.425 kb on + strand, within LRK53_RS04275 at 995.510 kb on + strand, within LRK53_RS04275 at 995.510 kb on + strand, within LRK53_RS04275 at 995.510 kb on + strand, within LRK53_RS04275 at 995.529 kb on - strand, within LRK53_RS04275 at 995.567 kb on + strand, within LRK53_RS04275 at 995.568 kb on - strand, within LRK53_RS04275 at 995.723 kb on + strand at 995.723 kb on + strand at 995.757 kb on - strand at 995.757 kb on - strand at 995.757 kb on - strand at 996.145 kb on + strand, within LRK53_RS04280 at 996.145 kb on + strand, within LRK53_RS04280 at 996.145 kb on + strand, within LRK53_RS04280 at 996.281 kb on - strand, within LRK53_RS04280 at 996.325 kb on + strand, within LRK53_RS04280 at 996.325 kb on + strand, within LRK53_RS04280 at 996.325 kb on + strand, within LRK53_RS04280 at 996.325 kb on + strand, within LRK53_RS04280 at 996.325 kb on + strand, within LRK53_RS04280 at 996.325 kb on + strand, within LRK53_RS04280 at 996.325 kb on + strand, within LRK53_RS04280 at 996.325 kb on + strand, within LRK53_RS04280 at 996.326 kb on - strand, within LRK53_RS04280 at 996.326 kb on - strand, within LRK53_RS04280 at 996.326 kb on - strand, within LRK53_RS04280 at 996.326 kb on - strand, within LRK53_RS04280 at 996.326 kb on - strand, within LRK53_RS04280 at 996.326 kb on - strand, within LRK53_RS04280 at 996.328 kb on + strand, within LRK53_RS04280 at 996.328 kb on + strand, within LRK53_RS04280 at 996.328 kb on + strand, within LRK53_RS04280 at 996.328 kb on + strand, within LRK53_RS04280 at 996.329 kb on - strand, within LRK53_RS04280 at 996.329 kb on - strand, within LRK53_RS04280 at 996.329 kb on - strand, within LRK53_RS04280 at 996.329 kb on - strand, within LRK53_RS04280 at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.621 kb on + strand at 996.621 kb on + strand at 996.621 kb on + strand at 996.621 kb on + strand at 996.621 kb on + strand at 996.621 kb on + strand at 996.621 kb on + strand at 996.621 kb on + strand at 996.621 kb on + strand at 996.621 kb on + strand at 996.621 kb on + strand at 996.621 kb on + strand at 996.621 kb on + strand at 996.621 kb on + strand at 996.621 kb on + strand at 996.621 kb on + strand at 996.621 kb on + strand at 996.621 kb on + strand at 996.622 kb on - strand at 996.622 kb on - strand at 996.622 kb on - strand at 996.622 kb on - strand at 996.622 kb on - strand at 996.622 kb on - strand at 996.622 kb on - strand at 996.622 kb on - strand at 996.622 kb on - strand at 996.622 kb on - strand at 996.622 kb on - strand at 996.622 kb on - strand at 996.622 kb on - strand at 996.622 kb on - strand at 996.622 kb on - strand at 996.622 kb on - strand at 996.645 kb on + strand at 996.645 kb on + strand at 996.645 kb on + strand at 996.645 kb on + strand at 996.645 kb on + strand at 996.646 kb on - strand at 996.646 kb on - strand at 996.646 kb on - strand at 996.646 kb on - strand at 996.646 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 994,143 + LRK53_RS04265 0.58 +1.2 994,144 - LRK53_RS04265 0.58 +2.8 994,171 - LRK53_RS04265 0.61 +2.6 994,171 - LRK53_RS04265 0.61 +1.1 994,236 + LRK53_RS04265 0.68 +1.0 994,236 + LRK53_RS04265 0.68 -0.0 994,236 + LRK53_RS04265 0.68 +1.0 994,236 + LRK53_RS04265 0.68 -1.0 994,236 + LRK53_RS04265 0.68 -0.3 994,236 + LRK53_RS04265 0.68 +0.2 994,236 + LRK53_RS04265 0.68 +0.4 994,236 + LRK53_RS04265 0.68 +0.4 994,236 + LRK53_RS04265 0.68 -0.4 994,237 - LRK53_RS04265 0.68 +1.2 994,237 - LRK53_RS04265 0.68 +1.4 994,237 - LRK53_RS04265 0.68 -1.3 994,237 - LRK53_RS04265 0.68 +1.2 994,446 + +2.7 994,447 - +0.7 994,447 - +1.3 994,448 + -0.3 994,448 + -1.4 994,448 + -1.4 994,448 + -0.6 994,448 + -0.4 994,448 + -0.6 994,448 + +1.0 994,449 - +1.7 994,449 - +1.6 994,449 - +1.0 994,449 - -1.4 994,449 - -0.0 994,449 - +1.2 994,449 - -0.8 994,449 - +0.6 994,449 - -0.8 994,449 - -0.6 994,556 + -0.3 994,556 + -0.6 994,657 + +1.6 994,657 + -1.0 994,658 - -0.5 994,658 - -1.1 994,812 + LRK53_RS04270 0.53 -0.8 994,812 + LRK53_RS04270 0.53 -0.4 994,813 - LRK53_RS04270 0.54 +0.3 994,813 - LRK53_RS04270 0.54 -0.9 994,813 - LRK53_RS04270 0.54 +1.9 994,923 + LRK53_RS04270 0.89 +0.3 994,923 + LRK53_RS04270 0.89 +0.4 994,923 + LRK53_RS04270 0.89 -0.4 994,924 - LRK53_RS04270 0.90 -0.0 994,924 - LRK53_RS04270 0.90 -1.3 994,924 - LRK53_RS04270 0.90 -1.4 994,958 + +0.2 994,958 + -0.6 994,958 + -0.1 994,958 + +0.7 994,958 + -2.3 994,958 + -2.0 994,958 + +0.7 994,958 + +0.0 994,958 + -0.4 994,958 + +0.6 994,959 - +0.1 994,959 - -0.4 994,959 - -0.5 994,959 - -0.8 994,959 - +0.6 994,959 - -0.5 994,959 - +1.0 994,959 - +1.0 994,959 - -0.9 994,959 - +0.1 994,959 - -1.4 994,959 - -1.6 994,964 + -0.5 994,964 + +0.7 994,964 + -2.4 994,964 + +0.3 994,964 + -0.9 994,964 + -0.2 994,964 + -0.4 994,964 + -1.3 994,964 + +0.5 994,964 + +0.4 994,964 + -1.4 994,965 - +0.1 994,965 - +2.0 994,965 - -2.0 994,965 - +0.2 994,965 - +0.9 994,965 - -0.6 994,965 - +1.2 994,965 - -2.2 994,965 - +1.4 994,965 - +1.6 994,965 - -1.9 994,965 - -0.1 994,965 - -1.4 994,965 - -0.8 994,965 - -2.3 995,425 + LRK53_RS04275 0.59 -1.4 995,510 + LRK53_RS04275 0.69 -0.0 995,510 + LRK53_RS04275 0.69 +0.2 995,510 + LRK53_RS04275 0.69 +1.0 995,529 - LRK53_RS04275 0.71 +0.2 995,567 + LRK53_RS04275 0.76 -1.4 995,568 - LRK53_RS04275 0.76 -1.9 995,723 + +1.1 995,723 + -0.6 995,757 - +1.0 995,757 - +0.4 995,757 - +1.8 996,145 + LRK53_RS04280 0.40 -0.6 996,145 + LRK53_RS04280 0.40 +0.2 996,145 + LRK53_RS04280 0.40 +1.6 996,281 - LRK53_RS04280 0.61 -0.6 996,325 + LRK53_RS04280 0.68 -1.4 996,325 + LRK53_RS04280 0.68 -1.1 996,325 + LRK53_RS04280 0.68 -0.6 996,325 + LRK53_RS04280 0.68 -0.0 996,325 + LRK53_RS04280 0.68 +0.7 996,325 + LRK53_RS04280 0.68 +0.6 996,325 + LRK53_RS04280 0.68 -2.6 996,325 + LRK53_RS04280 0.68 -1.1 996,326 - LRK53_RS04280 0.68 -0.8 996,326 - LRK53_RS04280 0.68 +1.8 996,326 - LRK53_RS04280 0.68 -0.1 996,326 - LRK53_RS04280 0.68 -1.8 996,326 - LRK53_RS04280 0.68 +0.3 996,326 - LRK53_RS04280 0.68 -0.7 996,328 + LRK53_RS04280 0.68 +1.6 996,328 + LRK53_RS04280 0.68 -1.5 996,328 + LRK53_RS04280 0.68 -0.9 996,328 + LRK53_RS04280 0.68 -0.4 996,329 - LRK53_RS04280 0.68 -0.6 996,329 - LRK53_RS04280 0.68 -1.1 996,329 - LRK53_RS04280 0.68 -0.4 996,329 - LRK53_RS04280 0.68 -0.6 996,531 + +0.2 996,531 + -0.5 996,531 + -3.2 996,531 + +0.1 996,531 + -0.3 996,531 + -1.5 996,531 + +0.8 996,531 + -2.8 996,531 + +1.5 996,531 + -2.3 996,531 + -1.0 996,531 + -0.8 996,531 + -0.8 996,531 + +1.3 996,531 + -0.0 996,531 + -0.3 996,531 + +1.2 996,531 + +1.6 996,531 + -1.8 996,531 + +0.2 996,531 + +0.7 996,531 + -0.7 996,531 + -0.4 996,531 + -1.1 996,531 + -0.8 996,532 - -2.0 996,532 - -1.9 996,532 - -2.0 996,532 - -0.8 996,532 - -0.0 996,532 - -2.3 996,532 - +0.7 996,532 - -0.9 996,532 - -0.5 996,532 - -0.0 996,532 - +0.5 996,532 - +1.0 996,532 - -0.3 996,532 - +0.7 996,532 - -0.9 996,532 - -0.6 996,532 - -1.0 996,532 - -1.1 996,532 - -1.6 996,532 - +1.4 996,532 - +0.9 996,532 - +0.6 996,532 - -0.5 996,532 - -2.0 996,532 - +0.7 996,532 - -1.3 996,532 - -0.2 996,532 - -2.0 996,621 + -1.8 996,621 + -1.0 996,621 + -0.6 996,621 + -1.8 996,621 + +0.2 996,621 + +0.6 996,621 + -0.4 996,621 + -2.1 996,621 + +1.8 996,621 + -0.4 996,621 + -2.1 996,621 + -1.7 996,621 + -1.6 996,621 + +0.4 996,621 + -0.3 996,621 + -2.0 996,621 + +0.7 996,621 + -0.8 996,622 - +0.1 996,622 - +0.6 996,622 - -0.6 996,622 - +0.8 996,622 - -0.6 996,622 - +0.4 996,622 - -0.8 996,622 - +0.2 996,622 - -1.4 996,622 - +0.7 996,622 - -0.5 996,622 - -2.1 996,622 - +1.8 996,622 - -0.0 996,622 - -1.4 996,622 - +0.2 996,645 + -1.5 996,645 + -0.6 996,645 + +1.0 996,645 + -1.4 996,645 + +1.2 996,646 - -0.3 996,646 - -1.0 996,646 - -0.6 996,646 - -0.3 996,646 - +0.8
Or see this region's nucleotide sequence