Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS04100

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS04095 and LRK53_RS04100 are separated by 214 nucleotidesLRK53_RS04100 and LRK53_RS04105 are separated by 131 nucleotidesLRK53_RS04105 and LRK53_RS04110 are separated by 0 nucleotidesLRK53_RS04110 and LRK53_RS04115 are separated by 70 nucleotides LRK53_RS04095: LRK53_RS04095 - arginine deiminase-related protein, at 962,837 to 963,754 _RS04095 LRK53_RS04100: LRK53_RS04100 - DUF3247 family protein, at 963,969 to 964,271 _RS04100 LRK53_RS04105: LRK53_RS04105 - FAD-dependent oxidoreductase, at 964,403 to 964,964 _RS04105 LRK53_RS04110: LRK53_RS04110 - LytTR family transcriptional regulator DNA-binding domain-containing protein, at 964,965 to 965,144 _RS04110 LRK53_RS04115: LRK53_RS04115 - hypothetical protein, at 965,215 to 965,949 _RS04115 Position (kb) 963 964 965Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 963.168 kb on + strand, within LRK53_RS04095at 963.168 kb on + strand, within LRK53_RS04095at 963.168 kb on + strand, within LRK53_RS04095at 963.169 kb on - strand, within LRK53_RS04095at 963.169 kb on - strand, within LRK53_RS04095at 963.169 kb on - strand, within LRK53_RS04095at 963.195 kb on + strand, within LRK53_RS04095at 963.195 kb on + strand, within LRK53_RS04095at 963.195 kb on + strand, within LRK53_RS04095at 963.195 kb on + strand, within LRK53_RS04095at 963.195 kb on + strand, within LRK53_RS04095at 963.195 kb on + strand, within LRK53_RS04095at 963.195 kb on + strand, within LRK53_RS04095at 963.195 kb on + strand, within LRK53_RS04095at 963.195 kb on + strand, within LRK53_RS04095at 963.195 kb on + strand, within LRK53_RS04095at 963.195 kb on + strand, within LRK53_RS04095at 963.196 kb on - strand, within LRK53_RS04095at 963.196 kb on - strand, within LRK53_RS04095at 963.196 kb on - strand, within LRK53_RS04095at 963.196 kb on - strand, within LRK53_RS04095at 963.196 kb on - strand, within LRK53_RS04095at 963.196 kb on - strand, within LRK53_RS04095at 963.196 kb on - strand, within LRK53_RS04095at 963.196 kb on - strand, within LRK53_RS04095at 963.271 kb on - strand, within LRK53_RS04095at 963.357 kb on + strand, within LRK53_RS04095at 963.357 kb on + strand, within LRK53_RS04095at 963.357 kb on + strand, within LRK53_RS04095at 963.357 kb on + strand, within LRK53_RS04095at 963.358 kb on - strand, within LRK53_RS04095at 963.358 kb on - strand, within LRK53_RS04095at 963.609 kb on + strand, within LRK53_RS04095at 963.609 kb on + strand, within LRK53_RS04095at 963.609 kb on + strand, within LRK53_RS04095at 963.609 kb on + strand, within LRK53_RS04095at 963.609 kb on + strand, within LRK53_RS04095at 963.610 kb on - strand, within LRK53_RS04095at 963.610 kb on - strand, within LRK53_RS04095at 963.610 kb on - strand, within LRK53_RS04095at 963.610 kb on - strand, within LRK53_RS04095at 963.610 kb on - strand, within LRK53_RS04095at 963.610 kb on - strand, within LRK53_RS04095at 963.610 kb on - strand, within LRK53_RS04095at 963.767 kb on + strandat 963.768 kb on - strandat 963.768 kb on - strandat 963.768 kb on - strandat 963.768 kb on - strandat 963.768 kb on - strandat 963.768 kb on - strandat 963.785 kb on + strandat 963.786 kb on - strandat 963.786 kb on - strandat 963.786 kb on - strandat 963.786 kb on - strandat 963.896 kb on + strandat 963.896 kb on + strandat 963.896 kb on + strandat 963.993 kb on + strandat 963.993 kb on + strandat 963.994 kb on - strandat 963.994 kb on - strandat 963.994 kb on - strandat 964.043 kb on - strand, within LRK53_RS04100at 964.043 kb on - strand, within LRK53_RS04100at 964.043 kb on - strand, within LRK53_RS04100at 964.043 kb on - strand, within LRK53_RS04100at 964.043 kb on - strand, within LRK53_RS04100at 964.043 kb on - strand, within LRK53_RS04100at 964.043 kb on - strand, within LRK53_RS04100at 964.455 kb on + strandat 964.456 kb on - strandat 964.456 kb on - strandat 964.456 kb on - strandat 964.456 kb on - strandat 964.456 kb on - strandat 964.456 kb on - strandat 964.456 kb on - strandat 964.456 kb on - strandat 964.456 kb on - strandat 964.527 kb on + strand, within LRK53_RS04105at 964.528 kb on - strand, within LRK53_RS04105at 964.528 kb on - strand, within LRK53_RS04105at 964.545 kb on + strand, within LRK53_RS04105at 964.545 kb on + strand, within LRK53_RS04105at 964.545 kb on + strand, within LRK53_RS04105at 964.545 kb on + strand, within LRK53_RS04105at 964.545 kb on + strand, within LRK53_RS04105at 964.545 kb on + strand, within LRK53_RS04105at 964.545 kb on + strand, within LRK53_RS04105at 964.545 kb on + strand, within LRK53_RS04105at 964.545 kb on + strand, within LRK53_RS04105at 964.545 kb on + strand, within LRK53_RS04105at 964.545 kb on + strand, within LRK53_RS04105at 964.545 kb on + strand, within LRK53_RS04105at 964.545 kb on + strand, within LRK53_RS04105at 964.546 kb on - strand, within LRK53_RS04105at 964.546 kb on - strand, within LRK53_RS04105at 964.546 kb on - strand, within LRK53_RS04105at 964.546 kb on - strand, within LRK53_RS04105at 964.546 kb on - strand, within LRK53_RS04105at 964.546 kb on - strand, within LRK53_RS04105at 964.546 kb on - strand, within LRK53_RS04105at 964.546 kb on - strand, within LRK53_RS04105at 964.546 kb on - strand, within LRK53_RS04105at 964.819 kb on + strand, within LRK53_RS04105at 964.820 kb on - strand, within LRK53_RS04105at 964.820 kb on - strand, within LRK53_RS04105at 964.849 kb on + strand, within LRK53_RS04105at 964.849 kb on + strand, within LRK53_RS04105at 964.849 kb on + strand, within LRK53_RS04105at 964.849 kb on + strand, within LRK53_RS04105at 965.001 kb on + strand, within LRK53_RS04110at 965.001 kb on + strand, within LRK53_RS04110at 965.002 kb on - strand, within LRK53_RS04110at 965.002 kb on - strand, within LRK53_RS04110at 965.019 kb on + strand, within LRK53_RS04110at 965.019 kb on + strand, within LRK53_RS04110at 965.019 kb on + strand, within LRK53_RS04110at 965.068 kb on + strand, within LRK53_RS04110at 965.068 kb on + strand, within LRK53_RS04110at 965.069 kb on - strand, within LRK53_RS04110at 965.184 kb on + strandat 965.184 kb on + strandat 965.185 kb on - strandat 965.185 kb on - strandat 965.185 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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963,168 + LRK53_RS04095 0.36 -0.4
963,168 + LRK53_RS04095 0.36 +1.4
963,168 + LRK53_RS04095 0.36 +0.1
963,169 - LRK53_RS04095 0.36 +1.7
963,169 - LRK53_RS04095 0.36 -1.6
963,169 - LRK53_RS04095 0.36 -1.1
963,195 + LRK53_RS04095 0.39 +2.0
963,195 + LRK53_RS04095 0.39 -2.4
963,195 + LRK53_RS04095 0.39 +0.4
963,195 + LRK53_RS04095 0.39 -0.0
963,195 + LRK53_RS04095 0.39 +1.1
963,195 + LRK53_RS04095 0.39 -0.6
963,195 + LRK53_RS04095 0.39 +0.2
963,195 + LRK53_RS04095 0.39 -0.9
963,195 + LRK53_RS04095 0.39 +1.2
963,195 + LRK53_RS04095 0.39 +1.6
963,195 + LRK53_RS04095 0.39 -2.1
963,196 - LRK53_RS04095 0.39 +0.4
963,196 - LRK53_RS04095 0.39 -0.9
963,196 - LRK53_RS04095 0.39 -0.9
963,196 - LRK53_RS04095 0.39 -1.1
963,196 - LRK53_RS04095 0.39 +0.0
963,196 - LRK53_RS04095 0.39 +0.3
963,196 - LRK53_RS04095 0.39 -0.6
963,196 - LRK53_RS04095 0.39 +0.8
963,271 - LRK53_RS04095 0.47 -0.9
963,357 + LRK53_RS04095 0.57 +0.2
963,357 + LRK53_RS04095 0.57 -0.0
963,357 + LRK53_RS04095 0.57 +0.6
963,357 + LRK53_RS04095 0.57 -1.4
963,358 - LRK53_RS04095 0.57 -1.2
963,358 - LRK53_RS04095 0.57 -0.8
963,609 + LRK53_RS04095 0.84 -0.0
963,609 + LRK53_RS04095 0.84 -1.2
963,609 + LRK53_RS04095 0.84 -1.3
963,609 + LRK53_RS04095 0.84 -0.8
963,609 + LRK53_RS04095 0.84 -0.8
963,610 - LRK53_RS04095 0.84 -0.1
963,610 - LRK53_RS04095 0.84 +1.2
963,610 - LRK53_RS04095 0.84 -0.8
963,610 - LRK53_RS04095 0.84 +2.0
963,610 - LRK53_RS04095 0.84 -0.7
963,610 - LRK53_RS04095 0.84 +2.1
963,610 - LRK53_RS04095 0.84 +0.4
963,767 + +0.2
963,768 - -0.6
963,768 - +0.2
963,768 - -1.7
963,768 - -0.4
963,768 - -1.3
963,768 - -0.1
963,785 + +0.9
963,786 - -2.1
963,786 - -0.5
963,786 - -0.2
963,786 - -1.3
963,896 + +0.6
963,896 + -1.3
963,896 + -0.4
963,993 + -1.1
963,993 + +0.4
963,994 - -2.3
963,994 - +0.8
963,994 - -1.1
964,043 - LRK53_RS04100 0.24 -0.4
964,043 - LRK53_RS04100 0.24 +1.0
964,043 - LRK53_RS04100 0.24 -1.2
964,043 - LRK53_RS04100 0.24 -2.5
964,043 - LRK53_RS04100 0.24 -1.0
964,043 - LRK53_RS04100 0.24 -0.1
964,043 - LRK53_RS04100 0.24 -0.6
964,455 + -0.0
964,456 - +0.0
964,456 - -0.8
964,456 - +1.3
964,456 - +0.2
964,456 - -0.1
964,456 - +1.1
964,456 - -0.1
964,456 - -2.7
964,456 - -1.4
964,527 + LRK53_RS04105 0.22 -1.9
964,528 - LRK53_RS04105 0.22 +1.6
964,528 - LRK53_RS04105 0.22 -0.9
964,545 + LRK53_RS04105 0.25 +1.3
964,545 + LRK53_RS04105 0.25 +2.0
964,545 + LRK53_RS04105 0.25 +0.6
964,545 + LRK53_RS04105 0.25 +0.7
964,545 + LRK53_RS04105 0.25 -0.2
964,545 + LRK53_RS04105 0.25 -0.1
964,545 + LRK53_RS04105 0.25 +2.0
964,545 + LRK53_RS04105 0.25 +0.2
964,545 + LRK53_RS04105 0.25 -0.2
964,545 + LRK53_RS04105 0.25 -0.7
964,545 + LRK53_RS04105 0.25 +0.6
964,545 + LRK53_RS04105 0.25 -0.3
964,545 + LRK53_RS04105 0.25 -1.7
964,546 - LRK53_RS04105 0.25 +0.0
964,546 - LRK53_RS04105 0.25 -0.3
964,546 - LRK53_RS04105 0.25 -1.7
964,546 - LRK53_RS04105 0.25 -2.9
964,546 - LRK53_RS04105 0.25 -1.4
964,546 - LRK53_RS04105 0.25 -1.5
964,546 - LRK53_RS04105 0.25 -0.4
964,546 - LRK53_RS04105 0.25 -1.0
964,546 - LRK53_RS04105 0.25 +2.0
964,819 + LRK53_RS04105 0.74 -0.4
964,820 - LRK53_RS04105 0.74 +1.4
964,820 - LRK53_RS04105 0.74 +1.8
964,849 + LRK53_RS04105 0.79 -0.2
964,849 + LRK53_RS04105 0.79 -0.8
964,849 + LRK53_RS04105 0.79 +0.8
964,849 + LRK53_RS04105 0.79 -3.4
965,001 + LRK53_RS04110 0.20 -1.5
965,001 + LRK53_RS04110 0.20 -1.1
965,002 - LRK53_RS04110 0.21 -0.6
965,002 - LRK53_RS04110 0.21 -0.6
965,019 + LRK53_RS04110 0.30 +0.7
965,019 + LRK53_RS04110 0.30 -0.6
965,019 + LRK53_RS04110 0.30 +0.2
965,068 + LRK53_RS04110 0.57 +0.0
965,068 + LRK53_RS04110 0.57 -1.0
965,069 - LRK53_RS04110 0.58 +1.1
965,184 + +0.8
965,184 + -1.4
965,185 - -0.9
965,185 - +1.6
965,185 - +0.5

Or see this region's nucleotide sequence