Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03955 and LRK53_RS03960 are separated by 260 nucleotides LRK53_RS03960 and LRK53_RS03965 overlap by 1 nucleotides LRK53_RS03965 and LRK53_RS03970 are separated by 70 nucleotides LRK53_RS03970 and LRK53_RS03975 overlap by 49 nucleotides LRK53_RS03975 and LRK53_RS03980 are separated by 107 nucleotides
LRK53_RS03955: LRK53_RS03955 - primosomal protein N', at 925,089 to 927,263
_RS03955
LRK53_RS03960: LRK53_RS03960 - hypothetical protein, at 927,524 to 927,781
_RS03960
LRK53_RS03965: LRK53_RS03965 - hypothetical protein, at 927,781 to 928,098
_RS03965
LRK53_RS03970: LRK53_RS03970 - hypothetical protein, at 928,169 to 928,450
_RS03970
LRK53_RS03975: LRK53_RS03975 - DUF3667 domain-containing protein, at 928,402 to 928,692
_RS03975
LRK53_RS03980: LRK53_RS03980 - MATE family efflux transporter, at 928,800 to 930,185
_RS03980
Position (kb) 928
929 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 927.269 kb on - strand at 927.269 kb on - strand at 927.269 kb on - strand at 927.288 kb on + strand at 927.288 kb on + strand at 927.288 kb on + strand at 927.289 kb on - strand at 927.289 kb on - strand at 927.289 kb on - strand at 927.289 kb on - strand at 927.395 kb on + strand at 927.396 kb on - strand at 927.446 kb on - strand at 927.765 kb on + strand at 927.765 kb on + strand at 927.766 kb on - strand at 927.766 kb on - strand at 927.766 kb on - strand at 927.766 kb on - strand at 927.766 kb on - strand at 927.890 kb on + strand, within LRK53_RS03965 at 927.890 kb on + strand, within LRK53_RS03965 at 927.890 kb on + strand, within LRK53_RS03965 at 927.890 kb on + strand, within LRK53_RS03965 at 927.890 kb on + strand, within LRK53_RS03965 at 927.890 kb on + strand, within LRK53_RS03965 at 927.890 kb on + strand, within LRK53_RS03965 at 927.890 kb on + strand, within LRK53_RS03965 at 927.890 kb on + strand, within LRK53_RS03965 at 927.890 kb on + strand, within LRK53_RS03965 at 927.891 kb on - strand, within LRK53_RS03965 at 927.891 kb on - strand, within LRK53_RS03965 at 927.891 kb on - strand, within LRK53_RS03965 at 927.891 kb on - strand, within LRK53_RS03965 at 927.891 kb on - strand, within LRK53_RS03965 at 927.891 kb on - strand, within LRK53_RS03965 at 927.891 kb on - strand, within LRK53_RS03965 at 927.891 kb on - strand, within LRK53_RS03965 at 927.891 kb on - strand, within LRK53_RS03965 at 927.891 kb on - strand, within LRK53_RS03965 at 927.891 kb on - strand, within LRK53_RS03965 at 927.891 kb on - strand, within LRK53_RS03965 at 927.891 kb on - strand, within LRK53_RS03965 at 927.891 kb on - strand, within LRK53_RS03965 at 927.891 kb on - strand, within LRK53_RS03965 at 927.891 kb on - strand, within LRK53_RS03965 at 927.891 kb on - strand, within LRK53_RS03965 at 927.891 kb on - strand, within LRK53_RS03965 at 927.914 kb on + strand, within LRK53_RS03965 at 927.914 kb on + strand, within LRK53_RS03965 at 927.914 kb on + strand, within LRK53_RS03965 at 927.915 kb on - strand, within LRK53_RS03965 at 927.915 kb on - strand, within LRK53_RS03965 at 927.915 kb on - strand, within LRK53_RS03965 at 928.016 kb on + strand, within LRK53_RS03965 at 928.016 kb on + strand, within LRK53_RS03965 at 928.016 kb on + strand, within LRK53_RS03965 at 928.234 kb on + strand, within LRK53_RS03970 at 928.234 kb on + strand, within LRK53_RS03970 at 928.234 kb on + strand, within LRK53_RS03970 at 928.234 kb on + strand, within LRK53_RS03970 at 928.235 kb on - strand, within LRK53_RS03970 at 928.235 kb on - strand, within LRK53_RS03970 at 928.235 kb on - strand, within LRK53_RS03970 at 928.235 kb on - strand, within LRK53_RS03970 at 928.235 kb on - strand, within LRK53_RS03970 at 928.235 kb on - strand, within LRK53_RS03970 at 928.448 kb on + strand at 928.449 kb on - strand at 928.449 kb on - strand at 928.449 kb on - strand at 928.449 kb on - strand at 928.472 kb on + strand, within LRK53_RS03975 at 928.472 kb on + strand, within LRK53_RS03975 at 928.473 kb on - strand, within LRK53_RS03975 at 928.473 kb on - strand, within LRK53_RS03975 at 928.473 kb on - strand, within LRK53_RS03975 at 928.473 kb on - strand, within LRK53_RS03975 at 928.473 kb on - strand, within LRK53_RS03975 at 928.473 kb on - strand, within LRK53_RS03975 at 928.564 kb on + strand, within LRK53_RS03975 at 928.564 kb on + strand, within LRK53_RS03975 at 928.564 kb on + strand, within LRK53_RS03975 at 928.564 kb on + strand, within LRK53_RS03975 at 928.564 kb on + strand, within LRK53_RS03975 at 928.564 kb on + strand, within LRK53_RS03975 at 928.565 kb on - strand, within LRK53_RS03975 at 928.565 kb on - strand, within LRK53_RS03975 at 928.565 kb on - strand, within LRK53_RS03975 at 928.768 kb on + strand at 928.768 kb on + strand at 928.768 kb on + strand at 928.768 kb on + strand at 928.769 kb on - strand at 928.769 kb on - strand at 929.197 kb on + strand, within LRK53_RS03980 at 929.197 kb on + strand, within LRK53_RS03980 at 929.197 kb on + strand, within LRK53_RS03980 at 929.197 kb on + strand, within LRK53_RS03980 at 929.197 kb on + strand, within LRK53_RS03980 at 929.198 kb on - strand, within LRK53_RS03980 at 929.198 kb on - strand, within LRK53_RS03980 at 929.198 kb on - strand, within LRK53_RS03980 at 929.198 kb on - strand, within LRK53_RS03980 at 929.198 kb on - strand, within LRK53_RS03980 at 929.198 kb on - strand, within LRK53_RS03980 at 929.198 kb on - strand, within LRK53_RS03980 at 929.198 kb on - strand, within LRK53_RS03980 at 929.198 kb on - strand, within LRK53_RS03980 at 929.198 kb on - strand, within LRK53_RS03980 at 929.198 kb on - strand, within LRK53_RS03980 at 929.198 kb on - strand, within LRK53_RS03980 at 929.247 kb on + strand, within LRK53_RS03980 at 929.247 kb on + strand, within LRK53_RS03980 at 929.248 kb on - strand, within LRK53_RS03980 at 929.248 kb on - strand, within LRK53_RS03980 at 929.301 kb on + strand, within LRK53_RS03980 at 929.302 kb on - strand, within LRK53_RS03980 at 929.302 kb on - strand, within LRK53_RS03980 at 929.302 kb on - strand, within LRK53_RS03980 at 929.302 kb on - strand, within LRK53_RS03980 at 929.302 kb on - strand, within LRK53_RS03980 at 929.302 kb on - strand, within LRK53_RS03980 at 929.343 kb on + strand, within LRK53_RS03980 at 929.344 kb on - strand, within LRK53_RS03980 at 929.344 kb on - strand, within LRK53_RS03980 at 929.344 kb on - strand, within LRK53_RS03980 at 929.344 kb on - strand, within LRK53_RS03980 at 929.448 kb on + strand, within LRK53_RS03980 at 929.449 kb on - strand, within LRK53_RS03980 at 929.449 kb on - strand, within LRK53_RS03980 at 929.449 kb on - strand, within LRK53_RS03980
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 927,269 - -1.2 927,269 - +2.6 927,269 - -1.2 927,288 + +0.3 927,288 + -0.2 927,288 + +0.1 927,289 - -0.8 927,289 - -0.5 927,289 - -0.0 927,289 - +2.3 927,395 + -1.3 927,396 - -0.1 927,446 - -1.7 927,765 + -1.9 927,765 + +0.6 927,766 - -0.7 927,766 - +1.4 927,766 - -2.2 927,766 - -0.3 927,766 - -1.9 927,890 + LRK53_RS03965 0.34 -0.6 927,890 + LRK53_RS03965 0.34 +0.7 927,890 + LRK53_RS03965 0.34 -0.0 927,890 + LRK53_RS03965 0.34 -1.7 927,890 + LRK53_RS03965 0.34 -1.3 927,890 + LRK53_RS03965 0.34 -0.4 927,890 + LRK53_RS03965 0.34 -1.2 927,890 + LRK53_RS03965 0.34 +0.6 927,890 + LRK53_RS03965 0.34 -0.7 927,890 + LRK53_RS03965 0.34 +0.4 927,891 - LRK53_RS03965 0.35 -1.3 927,891 - LRK53_RS03965 0.35 -0.7 927,891 - LRK53_RS03965 0.35 -0.2 927,891 - LRK53_RS03965 0.35 +2.6 927,891 - LRK53_RS03965 0.35 -1.8 927,891 - LRK53_RS03965 0.35 -0.2 927,891 - LRK53_RS03965 0.35 +1.6 927,891 - LRK53_RS03965 0.35 -1.4 927,891 - LRK53_RS03965 0.35 -1.6 927,891 - LRK53_RS03965 0.35 +0.7 927,891 - LRK53_RS03965 0.35 -2.6 927,891 - LRK53_RS03965 0.35 -0.5 927,891 - LRK53_RS03965 0.35 -0.6 927,891 - LRK53_RS03965 0.35 +0.2 927,891 - LRK53_RS03965 0.35 -1.7 927,891 - LRK53_RS03965 0.35 +1.0 927,891 - LRK53_RS03965 0.35 +0.3 927,891 - LRK53_RS03965 0.35 +2.4 927,914 + LRK53_RS03965 0.42 -0.2 927,914 + LRK53_RS03965 0.42 -0.2 927,914 + LRK53_RS03965 0.42 -1.5 927,915 - LRK53_RS03965 0.42 -0.2 927,915 - LRK53_RS03965 0.42 -0.6 927,915 - LRK53_RS03965 0.42 +0.8 928,016 + LRK53_RS03965 0.74 -1.0 928,016 + LRK53_RS03965 0.74 +0.8 928,016 + LRK53_RS03965 0.74 +1.3 928,234 + LRK53_RS03970 0.23 +0.6 928,234 + LRK53_RS03970 0.23 +2.2 928,234 + LRK53_RS03970 0.23 -1.4 928,234 + LRK53_RS03970 0.23 -0.4 928,235 - LRK53_RS03970 0.23 +0.0 928,235 - LRK53_RS03970 0.23 -0.3 928,235 - LRK53_RS03970 0.23 +1.8 928,235 - LRK53_RS03970 0.23 -0.0 928,235 - LRK53_RS03970 0.23 +0.7 928,235 - LRK53_RS03970 0.23 -1.6 928,448 + +0.8 928,449 - +0.0 928,449 - +0.6 928,449 - +1.7 928,449 - +0.3 928,472 + LRK53_RS03975 0.24 -0.9 928,472 + LRK53_RS03975 0.24 -0.7 928,473 - LRK53_RS03975 0.24 +0.5 928,473 - LRK53_RS03975 0.24 +0.9 928,473 - LRK53_RS03975 0.24 +0.1 928,473 - LRK53_RS03975 0.24 -0.3 928,473 - LRK53_RS03975 0.24 -0.8 928,473 - LRK53_RS03975 0.24 +1.4 928,564 + LRK53_RS03975 0.56 -0.4 928,564 + LRK53_RS03975 0.56 +0.7 928,564 + LRK53_RS03975 0.56 -0.6 928,564 + LRK53_RS03975 0.56 -2.3 928,564 + LRK53_RS03975 0.56 +1.3 928,564 + LRK53_RS03975 0.56 -1.2 928,565 - LRK53_RS03975 0.56 -0.4 928,565 - LRK53_RS03975 0.56 +0.4 928,565 - LRK53_RS03975 0.56 -0.2 928,768 + -0.2 928,768 + +0.4 928,768 + +0.1 928,768 + -1.8 928,769 - -0.3 928,769 - +0.6 929,197 + LRK53_RS03980 0.29 -0.8 929,197 + LRK53_RS03980 0.29 -0.4 929,197 + LRK53_RS03980 0.29 -0.2 929,197 + LRK53_RS03980 0.29 -2.5 929,197 + LRK53_RS03980 0.29 +0.2 929,198 - LRK53_RS03980 0.29 -1.2 929,198 - LRK53_RS03980 0.29 +1.0 929,198 - LRK53_RS03980 0.29 -0.6 929,198 - LRK53_RS03980 0.29 -0.4 929,198 - LRK53_RS03980 0.29 +0.2 929,198 - LRK53_RS03980 0.29 +1.0 929,198 - LRK53_RS03980 0.29 -0.8 929,198 - LRK53_RS03980 0.29 -1.3 929,198 - LRK53_RS03980 0.29 -0.2 929,198 - LRK53_RS03980 0.29 -1.4 929,198 - LRK53_RS03980 0.29 +0.4 929,198 - LRK53_RS03980 0.29 -0.2 929,247 + LRK53_RS03980 0.32 -0.3 929,247 + LRK53_RS03980 0.32 -1.5 929,248 - LRK53_RS03980 0.32 -1.9 929,248 - LRK53_RS03980 0.32 +2.0 929,301 + LRK53_RS03980 0.36 +2.6 929,302 - LRK53_RS03980 0.36 +0.6 929,302 - LRK53_RS03980 0.36 -0.6 929,302 - LRK53_RS03980 0.36 +3.2 929,302 - LRK53_RS03980 0.36 -1.8 929,302 - LRK53_RS03980 0.36 +1.2 929,302 - LRK53_RS03980 0.36 -0.6 929,343 + LRK53_RS03980 0.39 -1.1 929,344 - LRK53_RS03980 0.39 +2.0 929,344 - LRK53_RS03980 0.39 +1.0 929,344 - LRK53_RS03980 0.39 +0.2 929,344 - LRK53_RS03980 0.39 -3.2 929,448 + LRK53_RS03980 0.47 -0.4 929,449 - LRK53_RS03980 0.47 +2.2 929,449 - LRK53_RS03980 0.47 -0.4 929,449 - LRK53_RS03980 0.47 -0.6
Or see this region's nucleotide sequence