Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03870 and LRK53_RS03875 are separated by 58 nucleotides LRK53_RS03875 and LRK53_RS03880 overlap by 4 nucleotides
LRK53_RS03870: LRK53_RS03870 - DUF3375 domain-containing protein, at 906,451 to 907,914
_RS03870
LRK53_RS03875: LRK53_RS03875 - DUF4194 domain-containing protein, at 907,973 to 908,590
_RS03875
LRK53_RS03880: LRK53_RS03880 - ATP-binding protein, at 908,587 to 911,958
_RS03880
Position (kb) 907
908
909 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 907.402 kb on + strand, within LRK53_RS03870 at 907.498 kb on + strand, within LRK53_RS03870 at 907.498 kb on + strand, within LRK53_RS03870 at 907.499 kb on - strand, within LRK53_RS03870 at 907.499 kb on - strand, within LRK53_RS03870 at 907.735 kb on + strand, within LRK53_RS03870 at 907.735 kb on + strand, within LRK53_RS03870 at 907.736 kb on - strand, within LRK53_RS03870 at 907.771 kb on + strand at 907.771 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.880 kb on - strand at 907.880 kb on - strand at 907.880 kb on - strand at 907.880 kb on - strand at 907.880 kb on - strand at 907.880 kb on - strand at 907.880 kb on - strand at 907.880 kb on - strand at 907.880 kb on - strand at 908.346 kb on - strand, within LRK53_RS03875 at 908.346 kb on - strand, within LRK53_RS03875 at 908.525 kb on + strand, within LRK53_RS03875 at 908.525 kb on + strand, within LRK53_RS03875 at 908.525 kb on + strand, within LRK53_RS03875 at 908.526 kb on - strand, within LRK53_RS03875 at 908.610 kb on + strand at 908.610 kb on + strand at 908.610 kb on + strand at 908.610 kb on + strand at 908.610 kb on + strand at 908.610 kb on + strand at 908.611 kb on - strand at 908.611 kb on - strand at 908.611 kb on - strand at 908.675 kb on + strand at 908.675 kb on + strand at 908.675 kb on + strand at 908.675 kb on + strand at 908.676 kb on - strand at 908.676 kb on - strand at 908.875 kb on + strand at 908.875 kb on + strand at 908.875 kb on + strand at 908.876 kb on - strand at 908.876 kb on - strand at 908.876 kb on - strand at 908.876 kb on - strand at 908.876 kb on - strand at 908.876 kb on - strand at 908.936 kb on - strand, within LRK53_RS03880 at 908.936 kb on - strand, within LRK53_RS03880 at 908.936 kb on - strand, within LRK53_RS03880 at 909.064 kb on + strand, within LRK53_RS03880 at 909.064 kb on + strand, within LRK53_RS03880 at 909.064 kb on + strand, within LRK53_RS03880 at 909.064 kb on + strand, within LRK53_RS03880 at 909.064 kb on + strand, within LRK53_RS03880 at 909.064 kb on + strand, within LRK53_RS03880 at 909.064 kb on + strand, within LRK53_RS03880 at 909.064 kb on + strand, within LRK53_RS03880 at 909.064 kb on + strand, within LRK53_RS03880 at 909.065 kb on - strand, within LRK53_RS03880 at 909.065 kb on - strand, within LRK53_RS03880 at 909.065 kb on - strand, within LRK53_RS03880 at 909.065 kb on - strand, within LRK53_RS03880 at 909.065 kb on - strand, within LRK53_RS03880 at 909.184 kb on + strand, within LRK53_RS03880 at 909.209 kb on + strand, within LRK53_RS03880 at 909.209 kb on + strand, within LRK53_RS03880 at 909.210 kb on - strand, within LRK53_RS03880 at 909.210 kb on - strand, within LRK53_RS03880 at 909.210 kb on - strand, within LRK53_RS03880 at 909.210 kb on - strand, within LRK53_RS03880 at 909.210 kb on - strand, within LRK53_RS03880
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 907,402 + LRK53_RS03870 0.65 +0.9 907,498 + LRK53_RS03870 0.72 -0.1 907,498 + LRK53_RS03870 0.72 +1.5 907,499 - LRK53_RS03870 0.72 +2.2 907,499 - LRK53_RS03870 0.72 +1.6 907,735 + LRK53_RS03870 0.88 -0.9 907,735 + LRK53_RS03870 0.88 -1.9 907,736 - LRK53_RS03870 0.88 +2.4 907,771 + +1.2 907,771 + +1.0 907,879 + -0.1 907,879 + -0.0 907,879 + -0.0 907,879 + -0.1 907,879 + +2.1 907,879 + +3.6 907,879 + -2.8 907,879 + -0.2 907,879 + -1.2 907,879 + -0.0 907,879 + +0.5 907,880 - -0.9 907,880 - -0.9 907,880 - -0.5 907,880 - -1.8 907,880 - -1.0 907,880 - +0.8 907,880 - +0.6 907,880 - +0.0 907,880 - +0.7 908,346 - LRK53_RS03875 0.60 -0.5 908,346 - LRK53_RS03875 0.60 -2.2 908,525 + LRK53_RS03875 0.89 -1.7 908,525 + LRK53_RS03875 0.89 -3.3 908,525 + LRK53_RS03875 0.89 -0.8 908,526 - LRK53_RS03875 0.89 -1.0 908,610 + -1.7 908,610 + -1.8 908,610 + -0.2 908,610 + -0.0 908,610 + +0.3 908,610 + -1.5 908,611 - +0.1 908,611 - +0.4 908,611 - -0.1 908,675 + +0.1 908,675 + -2.8 908,675 + +0.5 908,675 + +1.6 908,676 - -0.5 908,676 - +0.6 908,875 + -0.6 908,875 + +0.1 908,875 + -0.9 908,876 - +0.8 908,876 - -1.3 908,876 - -0.4 908,876 - -2.1 908,876 - -0.9 908,876 - +1.0 908,936 - LRK53_RS03880 0.10 +0.9 908,936 - LRK53_RS03880 0.10 +1.1 908,936 - LRK53_RS03880 0.10 -0.9 909,064 + LRK53_RS03880 0.14 -0.8 909,064 + LRK53_RS03880 0.14 -0.1 909,064 + LRK53_RS03880 0.14 +0.9 909,064 + LRK53_RS03880 0.14 +1.0 909,064 + LRK53_RS03880 0.14 -0.3 909,064 + LRK53_RS03880 0.14 -0.0 909,064 + LRK53_RS03880 0.14 -0.4 909,064 + LRK53_RS03880 0.14 -0.2 909,064 + LRK53_RS03880 0.14 -0.2 909,065 - LRK53_RS03880 0.14 +0.7 909,065 - LRK53_RS03880 0.14 +0.2 909,065 - LRK53_RS03880 0.14 +1.0 909,065 - LRK53_RS03880 0.14 +1.7 909,065 - LRK53_RS03880 0.14 +1.2 909,184 + LRK53_RS03880 0.18 -0.2 909,209 + LRK53_RS03880 0.18 -0.2 909,209 + LRK53_RS03880 0.18 -0.3 909,210 - LRK53_RS03880 0.18 -0.4 909,210 - LRK53_RS03880 0.18 +0.3 909,210 - LRK53_RS03880 0.18 -1.9 909,210 - LRK53_RS03880 0.18 +0.3 909,210 - LRK53_RS03880 0.18 -0.5
Or see this region's nucleotide sequence