Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03860 and LRK53_RS03865 are separated by 6 nucleotides LRK53_RS03865 and LRK53_RS03870 are separated by 254 nucleotides LRK53_RS03870 and LRK53_RS03875 are separated by 58 nucleotides LRK53_RS03875 and LRK53_RS03880 overlap by 4 nucleotides
LRK53_RS03860: LRK53_RS03860 - EAL domain-containing protein, at 902,576 to 905,536
_RS03860
LRK53_RS03865: LRK53_RS03865 - DsbA family oxidoreductase, at 905,543 to 906,196
_RS03865
LRK53_RS03870: LRK53_RS03870 - DUF3375 domain-containing protein, at 906,451 to 907,914
_RS03870
LRK53_RS03875: LRK53_RS03875 - DUF4194 domain-containing protein, at 907,973 to 908,590
_RS03875
LRK53_RS03880: LRK53_RS03880 - ATP-binding protein, at 908,587 to 911,958
_RS03880
Position (kb) 906
907
908 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 905.474 kb on + strand at 905.474 kb on + strand at 905.474 kb on + strand at 905.475 kb on - strand at 905.475 kb on - strand at 905.544 kb on + strand at 905.805 kb on + strand, within LRK53_RS03865 at 905.805 kb on + strand, within LRK53_RS03865 at 905.805 kb on + strand, within LRK53_RS03865 at 905.806 kb on - strand, within LRK53_RS03865 at 905.806 kb on - strand, within LRK53_RS03865 at 905.806 kb on - strand, within LRK53_RS03865 at 905.892 kb on + strand, within LRK53_RS03865 at 905.892 kb on + strand, within LRK53_RS03865 at 905.893 kb on - strand, within LRK53_RS03865 at 905.893 kb on - strand, within LRK53_RS03865 at 905.893 kb on - strand, within LRK53_RS03865 at 905.994 kb on + strand, within LRK53_RS03865 at 905.994 kb on + strand, within LRK53_RS03865 at 905.994 kb on + strand, within LRK53_RS03865 at 905.994 kb on + strand, within LRK53_RS03865 at 905.994 kb on + strand, within LRK53_RS03865 at 905.994 kb on + strand, within LRK53_RS03865 at 905.994 kb on + strand, within LRK53_RS03865 at 905.994 kb on + strand, within LRK53_RS03865 at 905.994 kb on + strand, within LRK53_RS03865 at 905.994 kb on + strand, within LRK53_RS03865 at 905.995 kb on - strand, within LRK53_RS03865 at 905.995 kb on - strand, within LRK53_RS03865 at 905.995 kb on - strand, within LRK53_RS03865 at 905.995 kb on - strand, within LRK53_RS03865 at 906.271 kb on + strand at 906.272 kb on - strand at 906.300 kb on + strand at 906.300 kb on + strand at 906.300 kb on + strand at 906.300 kb on + strand at 906.300 kb on + strand at 906.301 kb on - strand at 906.301 kb on - strand at 906.301 kb on - strand at 906.301 kb on - strand at 906.310 kb on + strand at 906.311 kb on - strand at 906.360 kb on + strand at 906.360 kb on + strand at 906.360 kb on + strand at 906.360 kb on + strand at 906.360 kb on + strand at 906.361 kb on - strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.374 kb on + strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.375 kb on - strand at 906.474 kb on + strand at 906.474 kb on + strand at 906.474 kb on + strand at 906.474 kb on + strand at 906.474 kb on + strand at 906.474 kb on + strand at 906.474 kb on + strand at 906.474 kb on + strand at 906.475 kb on - strand at 906.475 kb on - strand at 906.489 kb on - strand at 906.673 kb on + strand, within LRK53_RS03870 at 906.673 kb on + strand, within LRK53_RS03870 at 906.673 kb on + strand, within LRK53_RS03870 at 906.673 kb on + strand, within LRK53_RS03870 at 906.673 kb on + strand, within LRK53_RS03870 at 906.673 kb on + strand, within LRK53_RS03870 at 906.673 kb on + strand, within LRK53_RS03870 at 906.673 kb on + strand, within LRK53_RS03870 at 906.673 kb on + strand, within LRK53_RS03870 at 906.673 kb on + strand, within LRK53_RS03870 at 906.673 kb on + strand, within LRK53_RS03870 at 906.673 kb on + strand, within LRK53_RS03870 at 906.673 kb on + strand, within LRK53_RS03870 at 906.673 kb on + strand, within LRK53_RS03870 at 906.674 kb on - strand, within LRK53_RS03870 at 906.674 kb on - strand, within LRK53_RS03870 at 906.674 kb on - strand, within LRK53_RS03870 at 906.742 kb on + strand, within LRK53_RS03870 at 906.742 kb on + strand, within LRK53_RS03870 at 906.742 kb on + strand, within LRK53_RS03870 at 906.742 kb on + strand, within LRK53_RS03870 at 906.743 kb on - strand, within LRK53_RS03870 at 906.743 kb on - strand, within LRK53_RS03870 at 907.402 kb on + strand, within LRK53_RS03870 at 907.498 kb on + strand, within LRK53_RS03870 at 907.498 kb on + strand, within LRK53_RS03870 at 907.499 kb on - strand, within LRK53_RS03870 at 907.499 kb on - strand, within LRK53_RS03870 at 907.735 kb on + strand, within LRK53_RS03870 at 907.735 kb on + strand, within LRK53_RS03870 at 907.736 kb on - strand, within LRK53_RS03870 at 907.771 kb on + strand at 907.771 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.880 kb on - strand at 907.880 kb on - strand at 907.880 kb on - strand at 907.880 kb on - strand at 907.880 kb on - strand at 907.880 kb on - strand at 907.880 kb on - strand at 907.880 kb on - strand at 907.880 kb on - strand at 908.346 kb on - strand, within LRK53_RS03875 at 908.346 kb on - strand, within LRK53_RS03875 at 908.525 kb on + strand, within LRK53_RS03875 at 908.525 kb on + strand, within LRK53_RS03875 at 908.525 kb on + strand, within LRK53_RS03875 at 908.526 kb on - strand, within LRK53_RS03875 at 908.610 kb on + strand at 908.610 kb on + strand at 908.610 kb on + strand at 908.610 kb on + strand at 908.610 kb on + strand at 908.610 kb on + strand at 908.611 kb on - strand at 908.611 kb on - strand at 908.611 kb on - strand at 908.675 kb on + strand at 908.675 kb on + strand at 908.675 kb on + strand at 908.675 kb on + strand at 908.676 kb on - strand at 908.676 kb on - strand at 908.875 kb on + strand at 908.875 kb on + strand at 908.875 kb on + strand at 908.876 kb on - strand at 908.876 kb on - strand at 908.876 kb on - strand at 908.876 kb on - strand at 908.876 kb on - strand at 908.876 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 905,474 + -1.4 905,474 + -0.5 905,474 + -1.2 905,475 - +0.5 905,475 - -0.4 905,544 + +0.1 905,805 + LRK53_RS03865 0.40 -0.2 905,805 + LRK53_RS03865 0.40 -0.7 905,805 + LRK53_RS03865 0.40 -1.1 905,806 - LRK53_RS03865 0.40 +0.8 905,806 - LRK53_RS03865 0.40 +1.7 905,806 - LRK53_RS03865 0.40 +0.0 905,892 + LRK53_RS03865 0.53 +0.1 905,892 + LRK53_RS03865 0.53 +0.9 905,893 - LRK53_RS03865 0.54 -0.9 905,893 - LRK53_RS03865 0.54 +0.1 905,893 - LRK53_RS03865 0.54 -0.6 905,994 + LRK53_RS03865 0.69 -2.5 905,994 + LRK53_RS03865 0.69 -0.7 905,994 + LRK53_RS03865 0.69 +0.1 905,994 + LRK53_RS03865 0.69 +0.2 905,994 + LRK53_RS03865 0.69 +1.1 905,994 + LRK53_RS03865 0.69 -1.0 905,994 + LRK53_RS03865 0.69 -0.4 905,994 + LRK53_RS03865 0.69 -0.1 905,994 + LRK53_RS03865 0.69 -0.4 905,994 + LRK53_RS03865 0.69 +0.6 905,995 - LRK53_RS03865 0.69 -0.2 905,995 - LRK53_RS03865 0.69 -1.3 905,995 - LRK53_RS03865 0.69 -0.9 905,995 - LRK53_RS03865 0.69 +1.4 906,271 + +0.0 906,272 - -1.4 906,300 + -0.7 906,300 + -0.7 906,300 + +1.1 906,300 + +0.3 906,300 + -1.4 906,301 - -0.5 906,301 - -0.3 906,301 - -1.9 906,301 - +1.0 906,310 + +1.0 906,311 - -1.7 906,360 + -1.7 906,360 + -0.4 906,360 + -1.6 906,360 + -1.6 906,360 + -0.7 906,361 - -0.1 906,374 + +0.1 906,374 + +0.0 906,374 + -0.9 906,374 + -0.8 906,374 + +0.6 906,374 + -2.9 906,374 + -1.7 906,374 + -1.1 906,374 + -0.0 906,374 + -0.1 906,374 + -1.6 906,374 + -0.4 906,374 + -0.5 906,374 + -1.0 906,374 + -0.3 906,374 + +0.1 906,374 + -0.3 906,374 + -0.7 906,374 + -0.8 906,374 + -0.8 906,374 + -0.3 906,374 + +0.3 906,374 + +0.1 906,374 + +0.7 906,374 + +0.3 906,375 - +0.4 906,375 - -1.0 906,375 - -0.7 906,375 - +0.3 906,375 - -0.8 906,375 - -0.4 906,375 - -1.3 906,375 - +1.5 906,375 - +0.9 906,375 - +0.8 906,375 - -2.3 906,375 - -1.4 906,375 - -0.3 906,375 - +0.0 906,375 - -1.0 906,375 - -0.6 906,375 - +0.1 906,375 - +0.3 906,375 - -0.2 906,375 - -2.5 906,375 - -0.5 906,375 - -0.8 906,375 - -0.6 906,375 - -0.1 906,375 - -0.0 906,375 - -0.6 906,375 - -0.5 906,375 - -2.6 906,375 - -2.1 906,375 - -0.6 906,375 - +1.3 906,375 - -0.4 906,375 - +0.7 906,474 + -0.3 906,474 + -1.1 906,474 + +0.2 906,474 + -0.1 906,474 + -0.4 906,474 + +1.2 906,474 + -2.3 906,474 + +0.8 906,475 - -0.2 906,475 - +1.1 906,489 - -0.6 906,673 + LRK53_RS03870 0.15 -1.7 906,673 + LRK53_RS03870 0.15 +1.2 906,673 + LRK53_RS03870 0.15 +0.1 906,673 + LRK53_RS03870 0.15 +2.2 906,673 + LRK53_RS03870 0.15 +1.6 906,673 + LRK53_RS03870 0.15 -1.0 906,673 + LRK53_RS03870 0.15 -0.3 906,673 + LRK53_RS03870 0.15 -0.6 906,673 + LRK53_RS03870 0.15 -1.7 906,673 + LRK53_RS03870 0.15 -2.2 906,673 + LRK53_RS03870 0.15 -0.7 906,673 + LRK53_RS03870 0.15 -1.7 906,673 + LRK53_RS03870 0.15 -0.4 906,673 + LRK53_RS03870 0.15 +0.4 906,674 - LRK53_RS03870 0.15 +2.0 906,674 - LRK53_RS03870 0.15 +0.4 906,674 - LRK53_RS03870 0.15 -1.3 906,742 + LRK53_RS03870 0.20 -0.4 906,742 + LRK53_RS03870 0.20 -0.4 906,742 + LRK53_RS03870 0.20 -2.8 906,742 + LRK53_RS03870 0.20 -0.2 906,743 - LRK53_RS03870 0.20 -1.3 906,743 - LRK53_RS03870 0.20 -0.7 907,402 + LRK53_RS03870 0.65 +0.9 907,498 + LRK53_RS03870 0.72 -0.1 907,498 + LRK53_RS03870 0.72 +1.5 907,499 - LRK53_RS03870 0.72 +2.2 907,499 - LRK53_RS03870 0.72 +1.6 907,735 + LRK53_RS03870 0.88 -0.9 907,735 + LRK53_RS03870 0.88 -1.9 907,736 - LRK53_RS03870 0.88 +2.4 907,771 + +1.2 907,771 + +1.0 907,879 + -0.1 907,879 + -0.0 907,879 + -0.0 907,879 + -0.1 907,879 + +2.1 907,879 + +3.6 907,879 + -2.8 907,879 + -0.2 907,879 + -1.2 907,879 + -0.0 907,879 + +0.5 907,880 - -0.9 907,880 - -0.9 907,880 - -0.5 907,880 - -1.8 907,880 - -1.0 907,880 - +0.8 907,880 - +0.6 907,880 - +0.0 907,880 - +0.7 908,346 - LRK53_RS03875 0.60 -0.5 908,346 - LRK53_RS03875 0.60 -2.2 908,525 + LRK53_RS03875 0.89 -1.7 908,525 + LRK53_RS03875 0.89 -3.3 908,525 + LRK53_RS03875 0.89 -0.8 908,526 - LRK53_RS03875 0.89 -1.0 908,610 + -1.7 908,610 + -1.8 908,610 + -0.2 908,610 + -0.0 908,610 + +0.3 908,610 + -1.5 908,611 - +0.1 908,611 - +0.4 908,611 - -0.1 908,675 + +0.1 908,675 + -2.8 908,675 + +0.5 908,675 + +1.6 908,676 - -0.5 908,676 - +0.6 908,875 + -0.6 908,875 + +0.1 908,875 + -0.9 908,876 - +0.8 908,876 - -1.3 908,876 - -0.4 908,876 - -2.1 908,876 - -0.9 908,876 - +1.0
Or see this region's nucleotide sequence