Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03815

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS03800 and LRK53_RS03805 overlap by 4 nucleotidesLRK53_RS03805 and LRK53_RS03810 are separated by 4 nucleotidesLRK53_RS03810 and LRK53_RS03815 overlap by 4 nucleotidesLRK53_RS03815 and LRK53_RS03820 overlap by 4 nucleotidesLRK53_RS03820 and LRK53_RS03825 overlap by 4 nucleotides LRK53_RS03800: LRK53_RS03800 - FAD-dependent oxidoreductase, at 892,846 to 893,841 _RS03800 LRK53_RS03805: LRK53_RS03805 - sulfur carrier protein ThiS, at 893,838 to 894,032 _RS03805 LRK53_RS03810: LRK53_RS03810 - thiazole synthase, at 894,037 to 894,816 _RS03810 LRK53_RS03815: LRK53_RS03815 - thiamine phosphate synthase, at 894,813 to 895,421 _RS03815 LRK53_RS03820: LRK53_RS03820 - ThiF family adenylyltransferase, at 895,418 to 896,395 _RS03820 LRK53_RS03825: LRK53_RS03825 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 896,392 to 897,186 _RS03825 Position (kb) 894 895 896Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 894.030 kb on + strandat 894.030 kb on + strandat 894.030 kb on + strandat 894.030 kb on + strandat 894.030 kb on + strandat 894.030 kb on + strandat 894.055 kb on + strandat 894.101 kb on - strandat 894.101 kb on - strandat 894.161 kb on + strand, within LRK53_RS03810at 894.162 kb on - strand, within LRK53_RS03810at 894.430 kb on + strand, within LRK53_RS03810at 894.430 kb on + strand, within LRK53_RS03810at 894.430 kb on + strand, within LRK53_RS03810at 894.430 kb on + strand, within LRK53_RS03810at 894.430 kb on + strand, within LRK53_RS03810at 894.431 kb on - strand, within LRK53_RS03810at 894.431 kb on - strand, within LRK53_RS03810at 894.431 kb on - strand, within LRK53_RS03810at 894.431 kb on - strand, within LRK53_RS03810at 894.431 kb on - strand, within LRK53_RS03810at 894.640 kb on + strand, within LRK53_RS03810at 894.640 kb on + strand, within LRK53_RS03810at 894.641 kb on - strand, within LRK53_RS03810at 894.834 kb on + strandat 894.835 kb on - strandat 894.835 kb on - strandat 894.835 kb on - strandat 895.032 kb on + strand, within LRK53_RS03815at 895.032 kb on + strand, within LRK53_RS03815at 895.032 kb on + strand, within LRK53_RS03815at 895.033 kb on - strand, within LRK53_RS03815at 895.161 kb on + strand, within LRK53_RS03815at 895.161 kb on + strand, within LRK53_RS03815at 895.161 kb on + strand, within LRK53_RS03815at 895.161 kb on + strand, within LRK53_RS03815at 895.161 kb on + strand, within LRK53_RS03815at 895.161 kb on + strand, within LRK53_RS03815at 895.161 kb on + strand, within LRK53_RS03815at 895.161 kb on + strand, within LRK53_RS03815at 895.161 kb on + strand, within LRK53_RS03815at 895.161 kb on + strand, within LRK53_RS03815at 895.161 kb on + strand, within LRK53_RS03815at 895.162 kb on - strand, within LRK53_RS03815at 895.162 kb on - strand, within LRK53_RS03815at 895.162 kb on - strand, within LRK53_RS03815at 895.162 kb on - strand, within LRK53_RS03815at 895.162 kb on - strand, within LRK53_RS03815at 895.162 kb on - strand, within LRK53_RS03815at 895.162 kb on - strand, within LRK53_RS03815at 895.625 kb on + strand, within LRK53_RS03820at 895.626 kb on - strand, within LRK53_RS03820at 895.698 kb on + strand, within LRK53_RS03820at 895.698 kb on + strand, within LRK53_RS03820at 895.698 kb on + strand, within LRK53_RS03820at 895.698 kb on + strand, within LRK53_RS03820at 895.698 kb on + strand, within LRK53_RS03820at 895.698 kb on + strand, within LRK53_RS03820at 895.698 kb on + strand, within LRK53_RS03820at 895.698 kb on + strand, within LRK53_RS03820at 895.698 kb on + strand, within LRK53_RS03820at 895.699 kb on - strand, within LRK53_RS03820at 895.699 kb on - strand, within LRK53_RS03820at 895.699 kb on - strand, within LRK53_RS03820at 895.699 kb on - strand, within LRK53_RS03820at 895.699 kb on - strand, within LRK53_RS03820at 895.699 kb on - strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.803 kb on - strand, within LRK53_RS03820at 895.803 kb on - strand, within LRK53_RS03820at 895.803 kb on - strand, within LRK53_RS03820at 895.803 kb on - strand, within LRK53_RS03820at 895.908 kb on - strand, within LRK53_RS03820at 896.350 kb on + strandat 896.350 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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894,030 + -0.5
894,030 + -0.4
894,030 + -0.8
894,030 + +1.4
894,030 + -1.2
894,030 + +0.1
894,055 + -0.7
894,101 - -0.7
894,101 - -1.5
894,161 + LRK53_RS03810 0.16 +0.3
894,162 - LRK53_RS03810 0.16 -1.3
894,430 + LRK53_RS03810 0.50 -0.3
894,430 + LRK53_RS03810 0.50 +0.5
894,430 + LRK53_RS03810 0.50 -0.4
894,430 + LRK53_RS03810 0.50 -0.5
894,430 + LRK53_RS03810 0.50 +0.3
894,431 - LRK53_RS03810 0.51 -0.7
894,431 - LRK53_RS03810 0.51 +0.2
894,431 - LRK53_RS03810 0.51 -1.6
894,431 - LRK53_RS03810 0.51 -1.6
894,431 - LRK53_RS03810 0.51 -1.0
894,640 + LRK53_RS03810 0.77 -0.5
894,640 + LRK53_RS03810 0.77 -1.2
894,641 - LRK53_RS03810 0.77 -0.4
894,834 + +0.7
894,835 - -2.8
894,835 - -1.5
894,835 - +0.0
895,032 + LRK53_RS03815 0.36 -0.6
895,032 + LRK53_RS03815 0.36 +1.3
895,032 + LRK53_RS03815 0.36 -0.3
895,033 - LRK53_RS03815 0.36 -0.9
895,161 + LRK53_RS03815 0.57 -1.5
895,161 + LRK53_RS03815 0.57 +2.0
895,161 + LRK53_RS03815 0.57 +0.6
895,161 + LRK53_RS03815 0.57 +0.0
895,161 + LRK53_RS03815 0.57 +1.6
895,161 + LRK53_RS03815 0.57 -0.9
895,161 + LRK53_RS03815 0.57 -0.2
895,161 + LRK53_RS03815 0.57 -0.4
895,161 + LRK53_RS03815 0.57 +0.6
895,161 + LRK53_RS03815 0.57 +0.1
895,161 + LRK53_RS03815 0.57 +0.3
895,162 - LRK53_RS03815 0.57 +0.3
895,162 - LRK53_RS03815 0.57 -0.5
895,162 - LRK53_RS03815 0.57 +0.8
895,162 - LRK53_RS03815 0.57 +0.3
895,162 - LRK53_RS03815 0.57 +0.7
895,162 - LRK53_RS03815 0.57 -0.7
895,162 - LRK53_RS03815 0.57 +0.7
895,625 + LRK53_RS03820 0.21 -1.1
895,626 - LRK53_RS03820 0.21 -0.6
895,698 + LRK53_RS03820 0.29 +0.8
895,698 + LRK53_RS03820 0.29 -0.9
895,698 + LRK53_RS03820 0.29 +0.0
895,698 + LRK53_RS03820 0.29 -3.7
895,698 + LRK53_RS03820 0.29 -1.6
895,698 + LRK53_RS03820 0.29 +0.5
895,698 + LRK53_RS03820 0.29 -0.2
895,698 + LRK53_RS03820 0.29 -0.4
895,698 + LRK53_RS03820 0.29 +0.9
895,699 - LRK53_RS03820 0.29 -0.7
895,699 - LRK53_RS03820 0.29 -1.7
895,699 - LRK53_RS03820 0.29 +0.2
895,699 - LRK53_RS03820 0.29 +0.0
895,699 - LRK53_RS03820 0.29 +0.1
895,699 - LRK53_RS03820 0.29 -0.7
895,802 + LRK53_RS03820 0.39 -2.1
895,802 + LRK53_RS03820 0.39 -1.4
895,802 + LRK53_RS03820 0.39 -0.7
895,802 + LRK53_RS03820 0.39 +1.3
895,802 + LRK53_RS03820 0.39 +0.9
895,802 + LRK53_RS03820 0.39 -0.5
895,802 + LRK53_RS03820 0.39 -1.3
895,802 + LRK53_RS03820 0.39 -0.8
895,802 + LRK53_RS03820 0.39 -0.7
895,803 - LRK53_RS03820 0.39 +0.3
895,803 - LRK53_RS03820 0.39 +0.5
895,803 - LRK53_RS03820 0.39 +2.2
895,803 - LRK53_RS03820 0.39 -0.7
895,908 - LRK53_RS03820 0.50 +0.3
896,350 + +1.4
896,350 + +2.3

Or see this region's nucleotide sequence