Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03360 and LRK53_RS03365 are separated by 180 nucleotides LRK53_RS03365 and LRK53_RS03370 are separated by 148 nucleotides LRK53_RS03370 and LRK53_RS03375 are separated by 279 nucleotides
LRK53_RS03360: LRK53_RS03360 - P-II family nitrogen regulator, at 796,695 to 797,033
_RS03360
LRK53_RS03365: LRK53_RS03365 - accessory factor UbiK family protein, at 797,214 to 797,474
_RS03365
LRK53_RS03370: LRK53_RS03370 - YifB family Mg chelatase-like AAA ATPase, at 797,623 to 799,116
_RS03370
LRK53_RS03375: LRK53_RS03375 - isocitrate lyase, at 799,396 to 800,694
_RS03375
Position (kb) 797
798
799
800 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 796.645 kb on + strand at 796.645 kb on + strand at 796.645 kb on + strand at 796.645 kb on + strand at 796.645 kb on + strand at 796.645 kb on + strand at 796.645 kb on + strand at 796.645 kb on + strand at 796.645 kb on + strand at 796.646 kb on - strand at 796.646 kb on - strand at 796.646 kb on - strand at 796.646 kb on - strand at 796.646 kb on - strand at 796.646 kb on - strand at 796.646 kb on - strand at 796.646 kb on - strand at 796.696 kb on + strand at 796.697 kb on - strand at 796.697 kb on - strand at 796.882 kb on + strand, within LRK53_RS03360 at 796.882 kb on + strand, within LRK53_RS03360 at 796.882 kb on + strand, within LRK53_RS03360 at 796.882 kb on + strand, within LRK53_RS03360 at 796.883 kb on - strand, within LRK53_RS03360 at 796.883 kb on - strand, within LRK53_RS03360 at 796.883 kb on - strand, within LRK53_RS03360 at 796.883 kb on - strand, within LRK53_RS03360 at 796.897 kb on + strand, within LRK53_RS03360 at 796.898 kb on - strand, within LRK53_RS03360 at 796.898 kb on - strand, within LRK53_RS03360 at 796.898 kb on - strand, within LRK53_RS03360 at 797.052 kb on + strand at 797.052 kb on + strand at 797.053 kb on - strand at 797.053 kb on - strand at 797.119 kb on + strand at 797.119 kb on + strand at 797.120 kb on - strand at 797.120 kb on - strand at 797.120 kb on - strand at 797.120 kb on - strand at 797.120 kb on - strand at 797.120 kb on - strand at 797.131 kb on + strand at 797.131 kb on + strand at 797.132 kb on - strand at 797.150 kb on + strand at 797.150 kb on + strand at 797.151 kb on - strand at 797.151 kb on - strand at 797.180 kb on + strand at 797.180 kb on + strand at 797.180 kb on + strand at 797.180 kb on + strand at 797.180 kb on + strand at 797.180 kb on + strand at 797.180 kb on + strand at 797.180 kb on + strand at 797.181 kb on - strand at 797.183 kb on + strand at 797.183 kb on + strand at 797.183 kb on + strand at 797.183 kb on + strand at 797.183 kb on + strand at 797.183 kb on + strand at 797.183 kb on + strand at 797.184 kb on - strand at 797.184 kb on - strand at 797.184 kb on - strand at 797.184 kb on - strand at 797.184 kb on - strand at 797.184 kb on - strand at 797.187 kb on + strand at 797.187 kb on + strand at 797.188 kb on - strand at 797.188 kb on - strand at 797.222 kb on + strand at 797.222 kb on + strand at 797.222 kb on + strand at 797.222 kb on + strand at 797.223 kb on - strand at 797.223 kb on - strand at 797.223 kb on - strand at 797.223 kb on - strand at 797.396 kb on + strand, within LRK53_RS03365 at 797.538 kb on + strand at 797.538 kb on + strand at 797.539 kb on - strand at 797.539 kb on - strand at 797.539 kb on - strand at 797.542 kb on + strand at 797.542 kb on + strand at 797.542 kb on + strand at 797.542 kb on + strand at 797.543 kb on - strand at 797.543 kb on - strand at 797.543 kb on - strand at 797.690 kb on + strand at 797.690 kb on + strand at 797.690 kb on + strand at 797.690 kb on + strand at 797.690 kb on + strand at 797.690 kb on + strand at 797.690 kb on + strand at 797.690 kb on + strand at 797.690 kb on + strand at 797.691 kb on - strand at 797.691 kb on - strand at 797.691 kb on - strand at 797.691 kb on - strand at 797.691 kb on - strand at 797.691 kb on - strand at 797.691 kb on - strand at 797.691 kb on - strand at 797.691 kb on - strand at 797.691 kb on - strand at 797.691 kb on - strand at 797.800 kb on + strand, within LRK53_RS03370 at 798.676 kb on + strand, within LRK53_RS03370 at 799.009 kb on + strand at 799.009 kb on + strand at 799.009 kb on + strand at 799.009 kb on + strand at 799.009 kb on + strand at 799.009 kb on + strand at 799.009 kb on + strand at 799.010 kb on - strand at 799.010 kb on - strand at 799.010 kb on - strand at 799.010 kb on - strand at 799.010 kb on - strand at 799.114 kb on + strand at 799.114 kb on + strand at 799.114 kb on + strand at 799.114 kb on + strand at 799.114 kb on + strand at 799.114 kb on + strand at 799.114 kb on + strand at 799.115 kb on - strand at 799.115 kb on - strand at 799.115 kb on - strand at 799.115 kb on - strand at 799.118 kb on + strand at 799.119 kb on - strand at 799.119 kb on - strand at 799.232 kb on + strand at 799.233 kb on - strand at 799.233 kb on - strand at 799.253 kb on - strand at 799.253 kb on - strand at 799.253 kb on - strand at 799.253 kb on - strand at 799.253 kb on - strand at 799.253 kb on - strand at 799.253 kb on - strand at 799.253 kb on - strand at 799.311 kb on - strand at 799.311 kb on - strand at 799.499 kb on + strand at 799.634 kb on + strand, within LRK53_RS03375 at 799.634 kb on + strand, within LRK53_RS03375 at 799.635 kb on - strand, within LRK53_RS03375 at 799.635 kb on - strand, within LRK53_RS03375 at 799.635 kb on - strand, within LRK53_RS03375 at 799.635 kb on - strand, within LRK53_RS03375 at 799.679 kb on + strand, within LRK53_RS03375 at 799.679 kb on + strand, within LRK53_RS03375 at 799.679 kb on + strand, within LRK53_RS03375 at 799.679 kb on + strand, within LRK53_RS03375 at 799.680 kb on - strand, within LRK53_RS03375 at 799.680 kb on - strand, within LRK53_RS03375 at 799.766 kb on + strand, within LRK53_RS03375 at 799.766 kb on + strand, within LRK53_RS03375 at 799.766 kb on + strand, within LRK53_RS03375 at 799.766 kb on + strand, within LRK53_RS03375 at 799.766 kb on + strand, within LRK53_RS03375 at 799.767 kb on - strand, within LRK53_RS03375 at 799.767 kb on - strand, within LRK53_RS03375 at 799.767 kb on - strand, within LRK53_RS03375 at 799.767 kb on - strand, within LRK53_RS03375 at 799.868 kb on + strand, within LRK53_RS03375 at 799.869 kb on - strand, within LRK53_RS03375 at 799.878 kb on - strand, within LRK53_RS03375
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 796,645 + -1.1 796,645 + +1.3 796,645 + -0.3 796,645 + +0.3 796,645 + +1.1 796,645 + -0.6 796,645 + -1.2 796,645 + -1.1 796,645 + -1.6 796,646 - -0.6 796,646 - +0.7 796,646 - -0.5 796,646 - -1.2 796,646 - -0.4 796,646 - -1.4 796,646 - -0.1 796,646 - +0.6 796,696 + +1.1 796,697 - +0.6 796,697 - -0.3 796,882 + LRK53_RS03360 0.55 +2.0 796,882 + LRK53_RS03360 0.55 +0.3 796,882 + LRK53_RS03360 0.55 -0.4 796,882 + LRK53_RS03360 0.55 -1.9 796,883 - LRK53_RS03360 0.55 +3.4 796,883 - LRK53_RS03360 0.55 -0.5 796,883 - LRK53_RS03360 0.55 +1.3 796,883 - LRK53_RS03360 0.55 +1.1 796,897 + LRK53_RS03360 0.60 -0.4 796,898 - LRK53_RS03360 0.60 +1.9 796,898 - LRK53_RS03360 0.60 -2.5 796,898 - LRK53_RS03360 0.60 +0.8 797,052 + -0.9 797,052 + +0.1 797,053 - -0.5 797,053 - +0.4 797,119 + -1.1 797,119 + +0.3 797,120 - +1.6 797,120 - +0.2 797,120 - -0.0 797,120 - -0.7 797,120 - -1.3 797,120 - +0.9 797,131 + -1.7 797,131 + -0.8 797,132 - -0.4 797,150 + -2.1 797,150 + -1.4 797,151 - -1.4 797,151 - -0.4 797,180 + +0.3 797,180 + +0.5 797,180 + +0.3 797,180 + -0.9 797,180 + -1.1 797,180 + -1.8 797,180 + -0.1 797,180 + +1.4 797,181 - -1.1 797,183 + +0.1 797,183 + +0.0 797,183 + -0.2 797,183 + +0.9 797,183 + -1.1 797,183 + -0.4 797,183 + -0.6 797,184 - -0.2 797,184 - +0.6 797,184 - -0.9 797,184 - +0.1 797,184 - -0.1 797,184 - -1.6 797,187 + +2.0 797,187 + -0.6 797,188 - -0.1 797,188 - -1.5 797,222 + -0.0 797,222 + -1.4 797,222 + +0.4 797,222 + +0.8 797,223 - +0.5 797,223 - +0.9 797,223 - +0.6 797,223 - -1.9 797,396 + LRK53_RS03365 0.70 +2.1 797,538 + -0.7 797,538 + -0.3 797,539 - -0.2 797,539 - -2.7 797,539 - +2.0 797,542 + -1.5 797,542 + -2.0 797,542 + +0.0 797,542 + -1.7 797,543 - -0.8 797,543 - -1.2 797,543 - -0.7 797,690 + +0.6 797,690 + -0.1 797,690 + -0.6 797,690 + +0.8 797,690 + -1.6 797,690 + +0.2 797,690 + +0.3 797,690 + +0.2 797,690 + +1.1 797,691 - +0.1 797,691 - +2.0 797,691 - +0.6 797,691 - -0.5 797,691 - -0.4 797,691 - -0.2 797,691 - +1.5 797,691 - +1.1 797,691 - +0.2 797,691 - +0.9 797,691 - +1.8 797,800 + LRK53_RS03370 0.12 -0.3 798,676 + LRK53_RS03370 0.70 -1.4 799,009 + -2.1 799,009 + -0.2 799,009 + +0.7 799,009 + -0.2 799,009 + -1.4 799,009 + -1.3 799,009 + -0.2 799,010 - +0.7 799,010 - -1.9 799,010 - -1.0 799,010 - -1.7 799,010 - -0.9 799,114 + -1.8 799,114 + -0.6 799,114 + -1.7 799,114 + -0.4 799,114 + +3.0 799,114 + -1.2 799,114 + -2.0 799,115 - -0.8 799,115 - -1.0 799,115 - -0.7 799,115 - -1.3 799,118 + +0.3 799,119 - +0.2 799,119 - +0.3 799,232 + -0.8 799,233 - -0.5 799,233 - -1.4 799,253 - -1.1 799,253 - +0.1 799,253 - -0.2 799,253 - +0.1 799,253 - -1.2 799,253 - -0.0 799,253 - -0.4 799,253 - -0.2 799,311 - -1.4 799,311 - +0.1 799,499 + -0.3 799,634 + LRK53_RS03375 0.18 +0.9 799,634 + LRK53_RS03375 0.18 +0.2 799,635 - LRK53_RS03375 0.18 +0.2 799,635 - LRK53_RS03375 0.18 -1.6 799,635 - LRK53_RS03375 0.18 +0.2 799,635 - LRK53_RS03375 0.18 +0.3 799,679 + LRK53_RS03375 0.22 -0.3 799,679 + LRK53_RS03375 0.22 -1.7 799,679 + LRK53_RS03375 0.22 -1.0 799,679 + LRK53_RS03375 0.22 -1.8 799,680 - LRK53_RS03375 0.22 -0.2 799,680 - LRK53_RS03375 0.22 -0.8 799,766 + LRK53_RS03375 0.28 -0.9 799,766 + LRK53_RS03375 0.28 -1.0 799,766 + LRK53_RS03375 0.28 +0.5 799,766 + LRK53_RS03375 0.28 -0.6 799,766 + LRK53_RS03375 0.28 -0.9 799,767 - LRK53_RS03375 0.29 +0.1 799,767 - LRK53_RS03375 0.29 -0.2 799,767 - LRK53_RS03375 0.29 +0.9 799,767 - LRK53_RS03375 0.29 +1.5 799,868 + LRK53_RS03375 0.36 -0.8 799,869 - LRK53_RS03375 0.36 -1.2 799,878 - LRK53_RS03375 0.37 +0.5
Or see this region's nucleotide sequence