Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03355 and LRK53_RS03360 are separated by 455 nucleotides LRK53_RS03360 and LRK53_RS03365 are separated by 180 nucleotides LRK53_RS03365 and LRK53_RS03370 are separated by 148 nucleotides
LRK53_RS03355: LRK53_RS03355 - ribonucleotide-diphosphate reductase subunit beta, at 795,031 to 796,239
_RS03355
LRK53_RS03360: LRK53_RS03360 - P-II family nitrogen regulator, at 796,695 to 797,033
_RS03360
LRK53_RS03365: LRK53_RS03365 - accessory factor UbiK family protein, at 797,214 to 797,474
_RS03365
LRK53_RS03370: LRK53_RS03370 - YifB family Mg chelatase-like AAA ATPase, at 797,623 to 799,116
_RS03370
Position (kb) 796
797
798 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 795.713 kb on + strand, within LRK53_RS03355 at 795.714 kb on - strand, within LRK53_RS03355 at 795.714 kb on - strand, within LRK53_RS03355 at 795.714 kb on - strand, within LRK53_RS03355 at 795.714 kb on - strand, within LRK53_RS03355 at 795.714 kb on - strand, within LRK53_RS03355 at 795.839 kb on + strand, within LRK53_RS03355 at 795.839 kb on + strand, within LRK53_RS03355 at 795.839 kb on + strand, within LRK53_RS03355 at 795.839 kb on + strand, within LRK53_RS03355 at 795.840 kb on - strand, within LRK53_RS03355 at 795.840 kb on - strand, within LRK53_RS03355 at 795.840 kb on - strand, within LRK53_RS03355 at 795.840 kb on - strand, within LRK53_RS03355 at 795.840 kb on - strand, within LRK53_RS03355 at 795.878 kb on + strand, within LRK53_RS03355 at 795.878 kb on + strand, within LRK53_RS03355 at 795.878 kb on + strand, within LRK53_RS03355 at 795.878 kb on + strand, within LRK53_RS03355 at 795.878 kb on + strand, within LRK53_RS03355 at 795.878 kb on + strand, within LRK53_RS03355 at 795.879 kb on - strand, within LRK53_RS03355 at 795.879 kb on - strand, within LRK53_RS03355 at 795.879 kb on - strand, within LRK53_RS03355 at 795.911 kb on + strand, within LRK53_RS03355 at 795.990 kb on - strand, within LRK53_RS03355 at 795.990 kb on - strand, within LRK53_RS03355 at 796.379 kb on - strand at 796.379 kb on - strand at 796.379 kb on - strand at 796.453 kb on + strand at 796.539 kb on + strand at 796.540 kb on - strand at 796.540 kb on - strand at 796.557 kb on + strand at 796.557 kb on + strand at 796.557 kb on + strand at 796.557 kb on + strand at 796.557 kb on + strand at 796.557 kb on + strand at 796.558 kb on - strand at 796.558 kb on - strand at 796.558 kb on - strand at 796.604 kb on + strand at 796.604 kb on + strand at 796.605 kb on - strand at 796.605 kb on - strand at 796.645 kb on + strand at 796.645 kb on + strand at 796.645 kb on + strand at 796.645 kb on + strand at 796.645 kb on + strand at 796.645 kb on + strand at 796.645 kb on + strand at 796.645 kb on + strand at 796.645 kb on + strand at 796.646 kb on - strand at 796.646 kb on - strand at 796.646 kb on - strand at 796.646 kb on - strand at 796.646 kb on - strand at 796.646 kb on - strand at 796.646 kb on - strand at 796.646 kb on - strand at 796.696 kb on + strand at 796.697 kb on - strand at 796.697 kb on - strand at 796.882 kb on + strand, within LRK53_RS03360 at 796.882 kb on + strand, within LRK53_RS03360 at 796.882 kb on + strand, within LRK53_RS03360 at 796.882 kb on + strand, within LRK53_RS03360 at 796.883 kb on - strand, within LRK53_RS03360 at 796.883 kb on - strand, within LRK53_RS03360 at 796.883 kb on - strand, within LRK53_RS03360 at 796.883 kb on - strand, within LRK53_RS03360 at 796.897 kb on + strand, within LRK53_RS03360 at 796.898 kb on - strand, within LRK53_RS03360 at 796.898 kb on - strand, within LRK53_RS03360 at 796.898 kb on - strand, within LRK53_RS03360 at 797.052 kb on + strand at 797.052 kb on + strand at 797.053 kb on - strand at 797.053 kb on - strand at 797.119 kb on + strand at 797.119 kb on + strand at 797.120 kb on - strand at 797.120 kb on - strand at 797.120 kb on - strand at 797.120 kb on - strand at 797.120 kb on - strand at 797.120 kb on - strand at 797.131 kb on + strand at 797.131 kb on + strand at 797.132 kb on - strand at 797.150 kb on + strand at 797.150 kb on + strand at 797.151 kb on - strand at 797.151 kb on - strand at 797.180 kb on + strand at 797.180 kb on + strand at 797.180 kb on + strand at 797.180 kb on + strand at 797.180 kb on + strand at 797.180 kb on + strand at 797.180 kb on + strand at 797.180 kb on + strand at 797.181 kb on - strand at 797.183 kb on + strand at 797.183 kb on + strand at 797.183 kb on + strand at 797.183 kb on + strand at 797.183 kb on + strand at 797.183 kb on + strand at 797.183 kb on + strand at 797.184 kb on - strand at 797.184 kb on - strand at 797.184 kb on - strand at 797.184 kb on - strand at 797.184 kb on - strand at 797.184 kb on - strand at 797.187 kb on + strand at 797.187 kb on + strand at 797.188 kb on - strand at 797.188 kb on - strand at 797.222 kb on + strand at 797.222 kb on + strand at 797.222 kb on + strand at 797.222 kb on + strand at 797.223 kb on - strand at 797.223 kb on - strand at 797.223 kb on - strand at 797.223 kb on - strand at 797.396 kb on + strand, within LRK53_RS03365 at 797.538 kb on + strand at 797.538 kb on + strand at 797.539 kb on - strand at 797.539 kb on - strand at 797.539 kb on - strand at 797.542 kb on + strand at 797.542 kb on + strand at 797.542 kb on + strand at 797.542 kb on + strand at 797.543 kb on - strand at 797.543 kb on - strand at 797.543 kb on - strand at 797.690 kb on + strand at 797.690 kb on + strand at 797.690 kb on + strand at 797.690 kb on + strand at 797.690 kb on + strand at 797.690 kb on + strand at 797.690 kb on + strand at 797.690 kb on + strand at 797.690 kb on + strand at 797.691 kb on - strand at 797.691 kb on - strand at 797.691 kb on - strand at 797.691 kb on - strand at 797.691 kb on - strand at 797.691 kb on - strand at 797.691 kb on - strand at 797.691 kb on - strand at 797.691 kb on - strand at 797.691 kb on - strand at 797.691 kb on - strand at 797.800 kb on + strand, within LRK53_RS03370
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 795,713 + LRK53_RS03355 0.56 -1.6 795,714 - LRK53_RS03355 0.56 +1.3 795,714 - LRK53_RS03355 0.56 +0.2 795,714 - LRK53_RS03355 0.56 +0.2 795,714 - LRK53_RS03355 0.56 -0.5 795,714 - LRK53_RS03355 0.56 +1.2 795,839 + LRK53_RS03355 0.67 -0.3 795,839 + LRK53_RS03355 0.67 -2.4 795,839 + LRK53_RS03355 0.67 +0.6 795,839 + LRK53_RS03355 0.67 +1.1 795,840 - LRK53_RS03355 0.67 +0.8 795,840 - LRK53_RS03355 0.67 -0.6 795,840 - LRK53_RS03355 0.67 -2.6 795,840 - LRK53_RS03355 0.67 +1.8 795,840 - LRK53_RS03355 0.67 +0.0 795,878 + LRK53_RS03355 0.70 -0.6 795,878 + LRK53_RS03355 0.70 +1.1 795,878 + LRK53_RS03355 0.70 -1.6 795,878 + LRK53_RS03355 0.70 -0.8 795,878 + LRK53_RS03355 0.70 +0.9 795,878 + LRK53_RS03355 0.70 -1.7 795,879 - LRK53_RS03355 0.70 +0.4 795,879 - LRK53_RS03355 0.70 -0.6 795,879 - LRK53_RS03355 0.70 -0.2 795,911 + LRK53_RS03355 0.73 -1.2 795,990 - LRK53_RS03355 0.79 -0.4 795,990 - LRK53_RS03355 0.79 -0.5 796,379 - -1.1 796,379 - -2.2 796,379 - -2.4 796,453 + +0.8 796,539 + +0.5 796,540 - +1.1 796,540 - +0.0 796,557 + -2.1 796,557 + -0.5 796,557 + -0.5 796,557 + +1.3 796,557 + +1.4 796,557 + +0.5 796,558 - +0.2 796,558 - -0.0 796,558 - +0.5 796,604 + -0.3 796,604 + -0.7 796,605 - +0.2 796,605 - -1.3 796,645 + -1.1 796,645 + +1.3 796,645 + -0.3 796,645 + +0.3 796,645 + +1.1 796,645 + -0.6 796,645 + -1.2 796,645 + -1.1 796,645 + -1.6 796,646 - -0.6 796,646 - +0.7 796,646 - -0.5 796,646 - -1.2 796,646 - -0.4 796,646 - -1.4 796,646 - -0.1 796,646 - +0.6 796,696 + +1.1 796,697 - +0.6 796,697 - -0.3 796,882 + LRK53_RS03360 0.55 +2.0 796,882 + LRK53_RS03360 0.55 +0.3 796,882 + LRK53_RS03360 0.55 -0.4 796,882 + LRK53_RS03360 0.55 -1.9 796,883 - LRK53_RS03360 0.55 +3.4 796,883 - LRK53_RS03360 0.55 -0.5 796,883 - LRK53_RS03360 0.55 +1.3 796,883 - LRK53_RS03360 0.55 +1.1 796,897 + LRK53_RS03360 0.60 -0.4 796,898 - LRK53_RS03360 0.60 +1.9 796,898 - LRK53_RS03360 0.60 -2.5 796,898 - LRK53_RS03360 0.60 +0.8 797,052 + -0.9 797,052 + +0.1 797,053 - -0.5 797,053 - +0.4 797,119 + -1.1 797,119 + +0.3 797,120 - +1.6 797,120 - +0.2 797,120 - -0.0 797,120 - -0.7 797,120 - -1.3 797,120 - +0.9 797,131 + -1.7 797,131 + -0.8 797,132 - -0.4 797,150 + -2.1 797,150 + -1.4 797,151 - -1.4 797,151 - -0.4 797,180 + +0.3 797,180 + +0.5 797,180 + +0.3 797,180 + -0.9 797,180 + -1.1 797,180 + -1.8 797,180 + -0.1 797,180 + +1.4 797,181 - -1.1 797,183 + +0.1 797,183 + +0.0 797,183 + -0.2 797,183 + +0.9 797,183 + -1.1 797,183 + -0.4 797,183 + -0.6 797,184 - -0.2 797,184 - +0.6 797,184 - -0.9 797,184 - +0.1 797,184 - -0.1 797,184 - -1.6 797,187 + +2.0 797,187 + -0.6 797,188 - -0.1 797,188 - -1.5 797,222 + -0.0 797,222 + -1.4 797,222 + +0.4 797,222 + +0.8 797,223 - +0.5 797,223 - +0.9 797,223 - +0.6 797,223 - -1.9 797,396 + LRK53_RS03365 0.70 +2.1 797,538 + -0.7 797,538 + -0.3 797,539 - -0.2 797,539 - -2.7 797,539 - +2.0 797,542 + -1.5 797,542 + -2.0 797,542 + +0.0 797,542 + -1.7 797,543 - -0.8 797,543 - -1.2 797,543 - -0.7 797,690 + +0.6 797,690 + -0.1 797,690 + -0.6 797,690 + +0.8 797,690 + -1.6 797,690 + +0.2 797,690 + +0.3 797,690 + +0.2 797,690 + +1.1 797,691 - +0.1 797,691 - +2.0 797,691 - +0.6 797,691 - -0.5 797,691 - -0.4 797,691 - -0.2 797,691 - +1.5 797,691 - +1.1 797,691 - +0.2 797,691 - +0.9 797,691 - +1.8 797,800 + LRK53_RS03370 0.12 -0.3
Or see this region's nucleotide sequence