Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS02765

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS02755 and LRK53_RS02760 overlap by 4 nucleotidesLRK53_RS02760 and LRK53_RS02765 overlap by 4 nucleotidesLRK53_RS02765 and LRK53_RS02770 overlap by 4 nucleotidesLRK53_RS02770 and LRK53_RS02775 overlap by 4 nucleotides LRK53_RS02755: LRK53_RS02755 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 632,957 to 633,613 _RS02755 LRK53_RS02760: LRK53_RS02760 - type II secretion system protein GspK, at 633,610 to 634,479 _RS02760 LRK53_RS02765: LRK53_RS02765 - PilN domain-containing protein, at 634,476 to 635,648 _RS02765 LRK53_RS02770: LRK53_RS02770 - type II secretion system protein GspM, at 635,645 to 636,292 _RS02770 LRK53_RS02775: LRK53_RS02775 - general secretion pathway protein GspN, at 636,289 to 637,017 _RS02775 Position (kb) 634 635 636Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 633.775 kb on + strand, within LRK53_RS02760at 633.776 kb on - strand, within LRK53_RS02760at 633.808 kb on + strand, within LRK53_RS02760at 633.809 kb on - strand, within LRK53_RS02760at 633.809 kb on - strand, within LRK53_RS02760at 633.809 kb on - strand, within LRK53_RS02760at 633.809 kb on - strand, within LRK53_RS02760at 633.862 kb on + strand, within LRK53_RS02760at 633.862 kb on + strand, within LRK53_RS02760at 633.862 kb on + strand, within LRK53_RS02760at 633.862 kb on + strand, within LRK53_RS02760at 633.862 kb on + strand, within LRK53_RS02760at 633.863 kb on - strand, within LRK53_RS02760at 633.863 kb on - strand, within LRK53_RS02760at 633.863 kb on - strand, within LRK53_RS02760at 633.863 kb on - strand, within LRK53_RS02760at 633.874 kb on + strand, within LRK53_RS02760at 633.874 kb on + strand, within LRK53_RS02760at 633.875 kb on - strand, within LRK53_RS02760at 633.875 kb on - strand, within LRK53_RS02760at 633.875 kb on - strand, within LRK53_RS02760at 633.875 kb on - strand, within LRK53_RS02760at 633.875 kb on - strand, within LRK53_RS02760at 634.075 kb on + strand, within LRK53_RS02760at 634.075 kb on + strand, within LRK53_RS02760at 634.075 kb on + strand, within LRK53_RS02760at 634.075 kb on + strand, within LRK53_RS02760at 634.075 kb on + strand, within LRK53_RS02760at 634.075 kb on + strand, within LRK53_RS02760at 634.075 kb on + strand, within LRK53_RS02760at 634.075 kb on + strand, within LRK53_RS02760at 634.075 kb on + strand, within LRK53_RS02760at 634.075 kb on + strand, within LRK53_RS02760at 634.076 kb on - strand, within LRK53_RS02760at 634.076 kb on - strand, within LRK53_RS02760at 634.076 kb on - strand, within LRK53_RS02760at 634.076 kb on - strand, within LRK53_RS02760at 634.076 kb on - strand, within LRK53_RS02760at 634.076 kb on - strand, within LRK53_RS02760at 634.076 kb on - strand, within LRK53_RS02760at 634.076 kb on - strand, within LRK53_RS02760at 634.076 kb on - strand, within LRK53_RS02760at 634.076 kb on - strand, within LRK53_RS02760at 634.076 kb on - strand, within LRK53_RS02760at 634.076 kb on - strand, within LRK53_RS02760at 634.076 kb on - strand, within LRK53_RS02760at 634.076 kb on - strand, within LRK53_RS02760at 634.076 kb on - strand, within LRK53_RS02760at 634.076 kb on - strand, within LRK53_RS02760at 634.076 kb on - strand, within LRK53_RS02760at 634.076 kb on - strand, within LRK53_RS02760at 634.076 kb on - strand, within LRK53_RS02760at 634.097 kb on - strand, within LRK53_RS02760at 634.169 kb on - strand, within LRK53_RS02760at 634.353 kb on + strand, within LRK53_RS02760at 634.353 kb on + strand, within LRK53_RS02760at 634.353 kb on + strand, within LRK53_RS02760at 634.353 kb on + strand, within LRK53_RS02760at 634.353 kb on + strand, within LRK53_RS02760at 634.353 kb on + strand, within LRK53_RS02760at 634.353 kb on + strand, within LRK53_RS02760at 634.353 kb on + strand, within LRK53_RS02760at 634.353 kb on + strand, within LRK53_RS02760at 634.354 kb on - strand, within LRK53_RS02760at 634.354 kb on - strand, within LRK53_RS02760at 634.354 kb on - strand, within LRK53_RS02760at 634.354 kb on - strand, within LRK53_RS02760at 634.354 kb on - strand, within LRK53_RS02760at 634.354 kb on - strand, within LRK53_RS02760at 634.354 kb on - strand, within LRK53_RS02760at 634.354 kb on - strand, within LRK53_RS02760at 634.354 kb on - strand, within LRK53_RS02760at 634.354 kb on - strand, within LRK53_RS02760at 634.354 kb on - strand, within LRK53_RS02760at 634.354 kb on - strand, within LRK53_RS02760at 634.354 kb on - strand, within LRK53_RS02760at 634.354 kb on - strand, within LRK53_RS02760at 634.354 kb on - strand, within LRK53_RS02760at 634.354 kb on - strand, within LRK53_RS02760at 634.354 kb on - strand, within LRK53_RS02760at 634.354 kb on - strand, within LRK53_RS02760at 634.354 kb on - strand, within LRK53_RS02760at 634.354 kb on - strand, within LRK53_RS02760at 634.354 kb on - strand, within LRK53_RS02760at 634.354 kb on - strand, within LRK53_RS02760at 634.354 kb on - strand, within LRK53_RS02760at 634.356 kb on + strand, within LRK53_RS02760at 634.356 kb on + strand, within LRK53_RS02760at 634.356 kb on + strand, within LRK53_RS02760at 634.356 kb on + strand, within LRK53_RS02760at 634.356 kb on + strand, within LRK53_RS02760at 634.356 kb on + strand, within LRK53_RS02760at 634.356 kb on + strand, within LRK53_RS02760at 634.357 kb on - strand, within LRK53_RS02760at 634.357 kb on - strand, within LRK53_RS02760at 634.357 kb on - strand, within LRK53_RS02760at 634.357 kb on - strand, within LRK53_RS02760at 634.357 kb on - strand, within LRK53_RS02760at 634.357 kb on - strand, within LRK53_RS02760at 634.357 kb on - strand, within LRK53_RS02760at 634.357 kb on - strand, within LRK53_RS02760at 634.357 kb on - strand, within LRK53_RS02760at 634.357 kb on - strand, within LRK53_RS02760at 634.357 kb on - strand, within LRK53_RS02760at 634.357 kb on - strand, within LRK53_RS02760at 634.357 kb on - strand, within LRK53_RS02760at 634.357 kb on - strand, within LRK53_RS02760at 634.357 kb on - strand, within LRK53_RS02760at 634.357 kb on - strand, within LRK53_RS02760at 634.357 kb on - strand, within LRK53_RS02760at 634.357 kb on - strand, within LRK53_RS02760at 634.441 kb on + strandat 634.441 kb on + strandat 634.441 kb on + strandat 634.441 kb on + strandat 634.441 kb on + strandat 634.441 kb on + strandat 634.441 kb on + strandat 634.441 kb on + strandat 634.441 kb on + strandat 634.441 kb on + strandat 634.442 kb on - strandat 634.442 kb on - strandat 634.442 kb on - strandat 634.442 kb on - strandat 634.442 kb on - strandat 634.442 kb on - strandat 634.442 kb on - strandat 634.481 kb on + strandat 634.481 kb on + strandat 634.519 kb on + strandat 634.519 kb on + strandat 634.519 kb on + strandat 634.519 kb on + strandat 634.520 kb on - strandat 634.520 kb on - strandat 634.520 kb on - strandat 634.932 kb on + strand, within LRK53_RS02765at 634.932 kb on + strand, within LRK53_RS02765at 634.932 kb on + strand, within LRK53_RS02765at 634.932 kb on + strand, within LRK53_RS02765at 634.932 kb on + strand, within LRK53_RS02765at 634.932 kb on + strand, within LRK53_RS02765at 634.932 kb on + strand, within LRK53_RS02765at 634.932 kb on + strand, within LRK53_RS02765at 634.932 kb on + strand, within LRK53_RS02765at 634.932 kb on + strand, within LRK53_RS02765at 634.932 kb on + strand, within LRK53_RS02765at 634.933 kb on - strand, within LRK53_RS02765at 634.933 kb on - strand, within LRK53_RS02765at 634.933 kb on - strand, within LRK53_RS02765at 634.933 kb on - strand, within LRK53_RS02765at 634.933 kb on - strand, within LRK53_RS02765at 634.933 kb on - strand, within LRK53_RS02765at 634.933 kb on - strand, within LRK53_RS02765at 634.933 kb on - strand, within LRK53_RS02765at 634.933 kb on - strand, within LRK53_RS02765at 634.933 kb on - strand, within LRK53_RS02765at 634.933 kb on - strand, within LRK53_RS02765at 634.933 kb on - strand, within LRK53_RS02765at 634.933 kb on - strand, within LRK53_RS02765at 634.933 kb on - strand, within LRK53_RS02765at 634.935 kb on + strand, within LRK53_RS02765at 634.935 kb on + strand, within LRK53_RS02765at 634.935 kb on + strand, within LRK53_RS02765at 634.935 kb on + strand, within LRK53_RS02765at 634.935 kb on + strand, within LRK53_RS02765at 634.935 kb on + strand, within LRK53_RS02765at 634.935 kb on + strand, within LRK53_RS02765at 634.936 kb on - strand, within LRK53_RS02765at 634.936 kb on - strand, within LRK53_RS02765at 634.936 kb on - strand, within LRK53_RS02765at 634.936 kb on - strand, within LRK53_RS02765at 635.577 kb on + strandat 635.577 kb on + strandat 635.577 kb on + strandat 635.577 kb on + strandat 635.723 kb on + strand, within LRK53_RS02770at 635.723 kb on + strand, within LRK53_RS02770at 635.723 kb on + strand, within LRK53_RS02770at 635.723 kb on + strand, within LRK53_RS02770at 635.724 kb on - strand, within LRK53_RS02770at 635.724 kb on - strand, within LRK53_RS02770at 635.811 kb on - strand, within LRK53_RS02770at 635.811 kb on - strand, within LRK53_RS02770at 636.125 kb on + strand, within LRK53_RS02770at 636.125 kb on + strand, within LRK53_RS02770at 636.125 kb on + strand, within LRK53_RS02770at 636.125 kb on + strand, within LRK53_RS02770at 636.125 kb on + strand, within LRK53_RS02770at 636.125 kb on + strand, within LRK53_RS02770at 636.125 kb on + strand, within LRK53_RS02770at 636.125 kb on + strand, within LRK53_RS02770at 636.125 kb on + strand, within LRK53_RS02770at 636.126 kb on - strand, within LRK53_RS02770at 636.126 kb on - strand, within LRK53_RS02770at 636.126 kb on - strand, within LRK53_RS02770at 636.126 kb on - strand, within LRK53_RS02770at 636.126 kb on - strand, within LRK53_RS02770at 636.152 kb on + strand, within LRK53_RS02770at 636.152 kb on + strand, within LRK53_RS02770at 636.153 kb on - strand, within LRK53_RS02770at 636.153 kb on - strand, within LRK53_RS02770at 636.153 kb on - strand, within LRK53_RS02770at 636.153 kb on - strand, within LRK53_RS02770at 636.153 kb on - strand, within LRK53_RS02770at 636.153 kb on - strand, within LRK53_RS02770at 636.222 kb on - strand, within LRK53_RS02770at 636.222 kb on - strand, within LRK53_RS02770

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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633,775 + LRK53_RS02760 0.19 -1.0
633,776 - LRK53_RS02760 0.19 -0.2
633,808 + LRK53_RS02760 0.23 -2.7
633,809 - LRK53_RS02760 0.23 -0.6
633,809 - LRK53_RS02760 0.23 -1.1
633,809 - LRK53_RS02760 0.23 -1.1
633,809 - LRK53_RS02760 0.23 -2.8
633,862 + LRK53_RS02760 0.29 -1.0
633,862 + LRK53_RS02760 0.29 -0.3
633,862 + LRK53_RS02760 0.29 -1.0
633,862 + LRK53_RS02760 0.29 -0.3
633,862 + LRK53_RS02760 0.29 -1.7
633,863 - LRK53_RS02760 0.29 -0.7
633,863 - LRK53_RS02760 0.29 -0.6
633,863 - LRK53_RS02760 0.29 -0.8
633,863 - LRK53_RS02760 0.29 -0.4
633,874 + LRK53_RS02760 0.30 -0.1
633,874 + LRK53_RS02760 0.30 -0.3
633,875 - LRK53_RS02760 0.30 -0.6
633,875 - LRK53_RS02760 0.30 +1.1
633,875 - LRK53_RS02760 0.30 -0.5
633,875 - LRK53_RS02760 0.30 +0.8
633,875 - LRK53_RS02760 0.30 -0.3
634,075 + LRK53_RS02760 0.53 -1.5
634,075 + LRK53_RS02760 0.53 +1.4
634,075 + LRK53_RS02760 0.53 -1.1
634,075 + LRK53_RS02760 0.53 -0.0
634,075 + LRK53_RS02760 0.53 +0.7
634,075 + LRK53_RS02760 0.53 +0.1
634,075 + LRK53_RS02760 0.53 -1.3
634,075 + LRK53_RS02760 0.53 -1.1
634,075 + LRK53_RS02760 0.53 -0.5
634,075 + LRK53_RS02760 0.53 -0.5
634,076 - LRK53_RS02760 0.54 -1.0
634,076 - LRK53_RS02760 0.54 -0.9
634,076 - LRK53_RS02760 0.54 +1.1
634,076 - LRK53_RS02760 0.54 -0.2
634,076 - LRK53_RS02760 0.54 -0.4
634,076 - LRK53_RS02760 0.54 -0.3
634,076 - LRK53_RS02760 0.54 -1.1
634,076 - LRK53_RS02760 0.54 +0.3
634,076 - LRK53_RS02760 0.54 -0.1
634,076 - LRK53_RS02760 0.54 +0.1
634,076 - LRK53_RS02760 0.54 +0.7
634,076 - LRK53_RS02760 0.54 +0.6
634,076 - LRK53_RS02760 0.54 +0.2
634,076 - LRK53_RS02760 0.54 -0.2
634,076 - LRK53_RS02760 0.54 +2.1
634,076 - LRK53_RS02760 0.54 -0.3
634,076 - LRK53_RS02760 0.54 -0.5
634,076 - LRK53_RS02760 0.54 -0.1
634,076 - LRK53_RS02760 0.54 +0.1
634,097 - LRK53_RS02760 0.56 +0.4
634,169 - LRK53_RS02760 0.64 +1.1
634,353 + LRK53_RS02760 0.85 -0.0
634,353 + LRK53_RS02760 0.85 +2.3
634,353 + LRK53_RS02760 0.85 +1.2
634,353 + LRK53_RS02760 0.85 -0.8
634,353 + LRK53_RS02760 0.85 -1.0
634,353 + LRK53_RS02760 0.85 -0.3
634,353 + LRK53_RS02760 0.85 +0.9
634,353 + LRK53_RS02760 0.85 -0.7
634,353 + LRK53_RS02760 0.85 -1.5
634,354 - LRK53_RS02760 0.86 +2.3
634,354 - LRK53_RS02760 0.86 +1.4
634,354 - LRK53_RS02760 0.86 -0.8
634,354 - LRK53_RS02760 0.86 +0.4
634,354 - LRK53_RS02760 0.86 +1.3
634,354 - LRK53_RS02760 0.86 +3.0
634,354 - LRK53_RS02760 0.86 -0.2
634,354 - LRK53_RS02760 0.86 -1.0
634,354 - LRK53_RS02760 0.86 -1.9
634,354 - LRK53_RS02760 0.86 +1.9
634,354 - LRK53_RS02760 0.86 -1.2
634,354 - LRK53_RS02760 0.86 -0.5
634,354 - LRK53_RS02760 0.86 +1.5
634,354 - LRK53_RS02760 0.86 -2.8
634,354 - LRK53_RS02760 0.86 +0.1
634,354 - LRK53_RS02760 0.86 -0.6
634,354 - LRK53_RS02760 0.86 +1.9
634,354 - LRK53_RS02760 0.86 +0.1
634,354 - LRK53_RS02760 0.86 -0.4
634,354 - LRK53_RS02760 0.86 -1.4
634,354 - LRK53_RS02760 0.86 -0.3
634,354 - LRK53_RS02760 0.86 +0.4
634,354 - LRK53_RS02760 0.86 -3.6
634,356 + LRK53_RS02760 0.86 +0.1
634,356 + LRK53_RS02760 0.86 -0.1
634,356 + LRK53_RS02760 0.86 -1.6
634,356 + LRK53_RS02760 0.86 +0.0
634,356 + LRK53_RS02760 0.86 +1.2
634,356 + LRK53_RS02760 0.86 -0.1
634,356 + LRK53_RS02760 0.86 -0.4
634,357 - LRK53_RS02760 0.86 -0.1
634,357 - LRK53_RS02760 0.86 +0.4
634,357 - LRK53_RS02760 0.86 -0.8
634,357 - LRK53_RS02760 0.86 +0.3
634,357 - LRK53_RS02760 0.86 +0.7
634,357 - LRK53_RS02760 0.86 -0.6
634,357 - LRK53_RS02760 0.86 +0.0
634,357 - LRK53_RS02760 0.86 -1.8
634,357 - LRK53_RS02760 0.86 -0.1
634,357 - LRK53_RS02760 0.86 -0.6
634,357 - LRK53_RS02760 0.86 -1.6
634,357 - LRK53_RS02760 0.86 -0.6
634,357 - LRK53_RS02760 0.86 +0.3
634,357 - LRK53_RS02760 0.86 -2.3
634,357 - LRK53_RS02760 0.86 -0.5
634,357 - LRK53_RS02760 0.86 -0.9
634,357 - LRK53_RS02760 0.86 -1.5
634,357 - LRK53_RS02760 0.86 -0.3
634,441 + -0.3
634,441 + -1.0
634,441 + +0.4
634,441 + -0.9
634,441 + -1.6
634,441 + +0.9
634,441 + +1.1
634,441 + +2.5
634,441 + +0.1
634,441 + -0.5
634,442 - -1.5
634,442 - +0.8
634,442 - +0.2
634,442 - -0.5
634,442 - -1.1
634,442 - +1.7
634,442 - -1.2
634,481 + +0.7
634,481 + +1.3
634,519 + +1.0
634,519 + -0.4
634,519 + -0.6
634,519 + -1.8
634,520 - +0.6
634,520 - -1.8
634,520 - -2.5
634,932 + LRK53_RS02765 0.39 +0.1
634,932 + LRK53_RS02765 0.39 +0.7
634,932 + LRK53_RS02765 0.39 +1.9
634,932 + LRK53_RS02765 0.39 -1.7
634,932 + LRK53_RS02765 0.39 +2.9
634,932 + LRK53_RS02765 0.39 +0.3
634,932 + LRK53_RS02765 0.39 -1.0
634,932 + LRK53_RS02765 0.39 +1.5
634,932 + LRK53_RS02765 0.39 -0.5
634,932 + LRK53_RS02765 0.39 -0.8
634,932 + LRK53_RS02765 0.39 -1.3
634,933 - LRK53_RS02765 0.39 +1.0
634,933 - LRK53_RS02765 0.39 +0.5
634,933 - LRK53_RS02765 0.39 +2.4
634,933 - LRK53_RS02765 0.39 -0.6
634,933 - LRK53_RS02765 0.39 +3.2
634,933 - LRK53_RS02765 0.39 -0.5
634,933 - LRK53_RS02765 0.39 +2.0
634,933 - LRK53_RS02765 0.39 -0.4
634,933 - LRK53_RS02765 0.39 -1.1
634,933 - LRK53_RS02765 0.39 -2.0
634,933 - LRK53_RS02765 0.39 +0.5
634,933 - LRK53_RS02765 0.39 -1.1
634,933 - LRK53_RS02765 0.39 +0.8
634,933 - LRK53_RS02765 0.39 -0.8
634,935 + LRK53_RS02765 0.39 -0.1
634,935 + LRK53_RS02765 0.39 -0.3
634,935 + LRK53_RS02765 0.39 -0.3
634,935 + LRK53_RS02765 0.39 +1.7
634,935 + LRK53_RS02765 0.39 +1.2
634,935 + LRK53_RS02765 0.39 -1.0
634,935 + LRK53_RS02765 0.39 +2.3
634,936 - LRK53_RS02765 0.39 -1.0
634,936 - LRK53_RS02765 0.39 +1.4
634,936 - LRK53_RS02765 0.39 +3.5
634,936 - LRK53_RS02765 0.39 -1.6
635,577 + -0.8
635,577 + -0.6
635,577 + +0.2
635,577 + -1.7
635,723 + LRK53_RS02770 0.12 +1.1
635,723 + LRK53_RS02770 0.12 -1.2
635,723 + LRK53_RS02770 0.12 +0.1
635,723 + LRK53_RS02770 0.12 +0.4
635,724 - LRK53_RS02770 0.12 -1.6
635,724 - LRK53_RS02770 0.12 +0.4
635,811 - LRK53_RS02770 0.26 -0.4
635,811 - LRK53_RS02770 0.26 +0.9
636,125 + LRK53_RS02770 0.74 -0.6
636,125 + LRK53_RS02770 0.74 +0.1
636,125 + LRK53_RS02770 0.74 +0.7
636,125 + LRK53_RS02770 0.74 -0.7
636,125 + LRK53_RS02770 0.74 -1.8
636,125 + LRK53_RS02770 0.74 +1.9
636,125 + LRK53_RS02770 0.74 -3.5
636,125 + LRK53_RS02770 0.74 -1.6
636,125 + LRK53_RS02770 0.74 -0.1
636,126 - LRK53_RS02770 0.74 +0.9
636,126 - LRK53_RS02770 0.74 -0.0
636,126 - LRK53_RS02770 0.74 -0.6
636,126 - LRK53_RS02770 0.74 -0.4
636,126 - LRK53_RS02770 0.74 -1.7
636,152 + LRK53_RS02770 0.78 -0.9
636,152 + LRK53_RS02770 0.78 +0.2
636,153 - LRK53_RS02770 0.78 +1.8
636,153 - LRK53_RS02770 0.78 -0.8
636,153 - LRK53_RS02770 0.78 +1.1
636,153 - LRK53_RS02770 0.78 -1.2
636,153 - LRK53_RS02770 0.78 +1.3
636,153 - LRK53_RS02770 0.78 -0.6
636,222 - LRK53_RS02770 0.89 -2.0
636,222 - LRK53_RS02770 0.89 +0.4

Or see this region's nucleotide sequence