Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS02475 and LRK53_RS02480 are separated by 227 nucleotides LRK53_RS02480 and LRK53_RS02485 are separated by 51 nucleotides LRK53_RS02485 and LRK53_RS02490 overlap by 4 nucleotides LRK53_RS02490 and LRK53_RS02495 are separated by 21 nucleotides
LRK53_RS02475: LRK53_RS02475 - ParB/RepB/Spo0J family partition protein, at 569,096 to 569,965
_RS02475
LRK53_RS02480: LRK53_RS02480 - glycosyltransferase family 2 protein, at 570,193 to 570,909
_RS02480
LRK53_RS02485: LRK53_RS02485 - hypothetical protein, at 570,961 to 571,155
_RS02485
LRK53_RS02490: LRK53_RS02490 - hypothetical protein, at 571,152 to 571,319
_RS02490
LRK53_RS02495: LRK53_RS02495 - hypothetical protein, at 571,341 to 572,099
_RS02495
Position (kb) 570
571
572 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 570.139 kb on + strand at 570.139 kb on + strand at 570.139 kb on + strand at 570.139 kb on + strand at 570.176 kb on + strand at 570.176 kb on + strand at 570.955 kb on + strand at 570.955 kb on + strand at 570.955 kb on + strand at 570.955 kb on + strand at 570.955 kb on + strand at 570.956 kb on - strand at 570.956 kb on - strand at 570.956 kb on - strand at 570.956 kb on - strand at 570.956 kb on - strand at 571.016 kb on + strand, within LRK53_RS02485 at 571.016 kb on + strand, within LRK53_RS02485 at 571.016 kb on + strand, within LRK53_RS02485 at 571.016 kb on + strand, within LRK53_RS02485 at 571.016 kb on + strand, within LRK53_RS02485 at 571.016 kb on + strand, within LRK53_RS02485 at 571.016 kb on + strand, within LRK53_RS02485 at 571.016 kb on + strand, within LRK53_RS02485 at 571.016 kb on + strand, within LRK53_RS02485 at 571.016 kb on + strand, within LRK53_RS02485 at 571.016 kb on + strand, within LRK53_RS02485 at 571.016 kb on + strand, within LRK53_RS02485 at 571.017 kb on - strand, within LRK53_RS02485 at 571.017 kb on - strand, within LRK53_RS02485 at 571.017 kb on - strand, within LRK53_RS02485 at 571.017 kb on - strand, within LRK53_RS02485 at 571.017 kb on - strand, within LRK53_RS02485 at 571.017 kb on - strand, within LRK53_RS02485 at 571.017 kb on - strand, within LRK53_RS02485 at 571.044 kb on - strand, within LRK53_RS02485 at 571.044 kb on - strand, within LRK53_RS02485 at 571.234 kb on - strand, within LRK53_RS02490 at 571.333 kb on + strand at 571.333 kb on + strand at 571.333 kb on + strand at 571.333 kb on + strand at 571.333 kb on + strand at 571.333 kb on + strand at 571.333 kb on + strand at 571.334 kb on - strand at 571.334 kb on - strand at 571.334 kb on - strand at 571.334 kb on - strand at 571.334 kb on - strand at 571.334 kb on - strand at 571.334 kb on - strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.343 kb on - strand at 571.343 kb on - strand at 571.343 kb on - strand at 571.343 kb on - strand at 571.343 kb on - strand at 571.343 kb on - strand at 571.343 kb on - strand at 571.343 kb on - strand at 571.343 kb on - strand at 571.356 kb on + strand at 571.357 kb on - strand at 571.357 kb on - strand at 571.357 kb on - strand at 571.414 kb on + strand at 571.415 kb on - strand at 571.415 kb on - strand at 571.647 kb on + strand, within LRK53_RS02495 at 571.647 kb on + strand, within LRK53_RS02495 at 571.647 kb on + strand, within LRK53_RS02495 at 571.667 kb on + strand, within LRK53_RS02495 at 571.667 kb on + strand, within LRK53_RS02495 at 571.864 kb on + strand, within LRK53_RS02495 at 571.864 kb on + strand, within LRK53_RS02495 at 571.864 kb on + strand, within LRK53_RS02495 at 571.864 kb on + strand, within LRK53_RS02495 at 571.864 kb on + strand, within LRK53_RS02495 at 571.864 kb on + strand, within LRK53_RS02495 at 571.864 kb on + strand, within LRK53_RS02495 at 571.864 kb on + strand, within LRK53_RS02495 at 571.865 kb on - strand, within LRK53_RS02495 at 571.865 kb on - strand, within LRK53_RS02495 at 571.865 kb on - strand, within LRK53_RS02495 at 571.865 kb on - strand, within LRK53_RS02495 at 571.865 kb on - strand, within LRK53_RS02495 at 571.865 kb on - strand, within LRK53_RS02495 at 571.865 kb on - strand, within LRK53_RS02495 at 571.865 kb on - strand, within LRK53_RS02495 at 572.019 kb on + strand, within LRK53_RS02495 at 572.019 kb on + strand, within LRK53_RS02495 at 572.019 kb on + strand, within LRK53_RS02495 at 572.019 kb on + strand, within LRK53_RS02495 at 572.019 kb on + strand, within LRK53_RS02495 at 572.019 kb on + strand, within LRK53_RS02495 at 572.019 kb on + strand, within LRK53_RS02495 at 572.020 kb on - strand, within LRK53_RS02495 at 572.020 kb on - strand, within LRK53_RS02495 at 572.020 kb on - strand, within LRK53_RS02495 at 572.020 kb on - strand, within LRK53_RS02495 at 572.020 kb on - strand, within LRK53_RS02495 at 572.020 kb on - strand, within LRK53_RS02495 at 572.020 kb on - strand, within LRK53_RS02495 at 572.020 kb on - strand, within LRK53_RS02495 at 572.020 kb on - strand, within LRK53_RS02495 at 572.020 kb on - strand, within LRK53_RS02495 at 572.020 kb on - strand, within LRK53_RS02495 at 572.020 kb on - strand, within LRK53_RS02495 at 572.020 kb on - strand, within LRK53_RS02495 at 572.020 kb on - strand, within LRK53_RS02495 at 572.020 kb on - strand, within LRK53_RS02495 at 572.086 kb on + strand at 572.086 kb on + strand at 572.086 kb on + strand at 572.086 kb on + strand at 572.087 kb on - strand at 572.087 kb on - strand at 572.087 kb on - strand at 572.087 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 570,139 + +0.8 570,139 + +0.7 570,139 + +0.4 570,139 + -0.0 570,176 + -1.1 570,176 + +0.4 570,955 + -2.2 570,955 + +0.3 570,955 + -0.5 570,955 + -0.6 570,955 + +0.0 570,956 - +1.6 570,956 - -2.4 570,956 - -0.1 570,956 - +1.1 570,956 - +0.8 571,016 + LRK53_RS02485 0.28 -2.4 571,016 + LRK53_RS02485 0.28 +0.4 571,016 + LRK53_RS02485 0.28 -0.6 571,016 + LRK53_RS02485 0.28 +1.2 571,016 + LRK53_RS02485 0.28 +1.3 571,016 + LRK53_RS02485 0.28 -0.3 571,016 + LRK53_RS02485 0.28 -0.7 571,016 + LRK53_RS02485 0.28 -0.5 571,016 + LRK53_RS02485 0.28 -0.1 571,016 + LRK53_RS02485 0.28 +0.1 571,016 + LRK53_RS02485 0.28 +0.6 571,016 + LRK53_RS02485 0.28 -0.8 571,017 - LRK53_RS02485 0.29 +0.2 571,017 - LRK53_RS02485 0.29 -0.8 571,017 - LRK53_RS02485 0.29 -0.6 571,017 - LRK53_RS02485 0.29 +1.1 571,017 - LRK53_RS02485 0.29 +1.0 571,017 - LRK53_RS02485 0.29 +0.9 571,017 - LRK53_RS02485 0.29 +0.5 571,044 - LRK53_RS02485 0.43 -0.3 571,044 - LRK53_RS02485 0.43 +0.6 571,234 - LRK53_RS02490 0.49 -1.9 571,333 + +0.2 571,333 + -1.3 571,333 + -2.5 571,333 + -0.0 571,333 + +0.7 571,333 + -0.1 571,333 + -2.1 571,334 - +0.4 571,334 - -0.3 571,334 - -0.9 571,334 - -1.2 571,334 - -0.3 571,334 - -0.9 571,334 - -3.5 571,342 + -0.4 571,342 + -2.2 571,342 + +1.3 571,342 + -1.0 571,342 + -0.6 571,342 + -1.4 571,342 + +2.8 571,342 + -2.3 571,342 + -1.1 571,342 + +0.6 571,342 + -0.7 571,342 + +1.3 571,342 + -0.5 571,343 - -0.1 571,343 - +0.8 571,343 - -0.6 571,343 - +1.1 571,343 - +1.6 571,343 - +0.9 571,343 - -0.8 571,343 - -0.8 571,343 - +0.1 571,356 + +0.5 571,357 - +0.8 571,357 - +0.1 571,357 - -0.3 571,414 + +1.1 571,415 - +1.5 571,415 - -1.4 571,647 + LRK53_RS02495 0.40 +0.4 571,647 + LRK53_RS02495 0.40 -0.1 571,647 + LRK53_RS02495 0.40 +1.1 571,667 + LRK53_RS02495 0.43 -1.8 571,667 + LRK53_RS02495 0.43 -0.2 571,864 + LRK53_RS02495 0.69 -0.8 571,864 + LRK53_RS02495 0.69 -0.0 571,864 + LRK53_RS02495 0.69 -0.9 571,864 + LRK53_RS02495 0.69 -0.8 571,864 + LRK53_RS02495 0.69 +0.5 571,864 + LRK53_RS02495 0.69 -1.0 571,864 + LRK53_RS02495 0.69 -0.3 571,864 + LRK53_RS02495 0.69 +1.0 571,865 - LRK53_RS02495 0.69 -2.9 571,865 - LRK53_RS02495 0.69 +1.4 571,865 - LRK53_RS02495 0.69 -1.2 571,865 - LRK53_RS02495 0.69 -1.0 571,865 - LRK53_RS02495 0.69 -0.1 571,865 - LRK53_RS02495 0.69 -1.8 571,865 - LRK53_RS02495 0.69 -0.1 571,865 - LRK53_RS02495 0.69 +0.5 572,019 + LRK53_RS02495 0.89 +0.1 572,019 + LRK53_RS02495 0.89 -0.1 572,019 + LRK53_RS02495 0.89 -0.9 572,019 + LRK53_RS02495 0.89 -0.3 572,019 + LRK53_RS02495 0.89 -0.8 572,019 + LRK53_RS02495 0.89 -0.3 572,019 + LRK53_RS02495 0.89 -1.0 572,020 - LRK53_RS02495 0.89 -0.3 572,020 - LRK53_RS02495 0.89 +0.4 572,020 - LRK53_RS02495 0.89 -1.2 572,020 - LRK53_RS02495 0.89 +0.8 572,020 - LRK53_RS02495 0.89 -0.9 572,020 - LRK53_RS02495 0.89 -0.2 572,020 - LRK53_RS02495 0.89 -0.1 572,020 - LRK53_RS02495 0.89 -1.1 572,020 - LRK53_RS02495 0.89 -0.3 572,020 - LRK53_RS02495 0.89 +0.2 572,020 - LRK53_RS02495 0.89 -0.1 572,020 - LRK53_RS02495 0.89 +0.1 572,020 - LRK53_RS02495 0.89 +0.0 572,020 - LRK53_RS02495 0.89 -0.1 572,020 - LRK53_RS02495 0.89 -2.1 572,086 + -1.3 572,086 + +0.6 572,086 + -0.8 572,086 + +3.7 572,087 - +0.2 572,087 - -0.1 572,087 - +0.1 572,087 - +0.3
Or see this region's nucleotide sequence