Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS02400 and LRK53_RS02405 are separated by 5 nucleotides LRK53_RS02405 and LRK53_RS02410 are separated by 178 nucleotides LRK53_RS02410 and LRK53_RS02415 are separated by 247 nucleotides
LRK53_RS02400: LRK53_RS02400 - exodeoxyribonuclease III, at 550,810 to 551,577
_RS02400
LRK53_RS02405: LRK53_RS02405 - YecA family protein, at 551,583 to 552,260
_RS02405
LRK53_RS02410: LRK53_RS02410 - pirin family protein, at 552,439 to 553,272
_RS02410
LRK53_RS02415: LRK53_RS02415 - carbohydrate ABC transporter permease, at 553,520 to 554,293
_RS02415
Position (kb) 552
553
554 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 551.571 kb on + strand at 551.571 kb on + strand at 551.571 kb on + strand at 551.571 kb on + strand at 551.571 kb on + strand at 551.571 kb on + strand at 551.571 kb on + strand at 551.571 kb on + strand at 551.572 kb on - strand at 551.572 kb on - strand at 551.646 kb on + strand at 551.646 kb on + strand at 551.646 kb on + strand at 551.646 kb on + strand at 551.646 kb on + strand at 551.647 kb on - strand at 551.863 kb on - strand, within LRK53_RS02405 at 552.090 kb on + strand, within LRK53_RS02405 at 552.091 kb on - strand, within LRK53_RS02405 at 552.091 kb on - strand, within LRK53_RS02405 at 552.091 kb on - strand, within LRK53_RS02405 at 552.141 kb on + strand, within LRK53_RS02405 at 552.141 kb on + strand, within LRK53_RS02405 at 552.142 kb on - strand, within LRK53_RS02405 at 552.142 kb on - strand, within LRK53_RS02405 at 552.142 kb on - strand, within LRK53_RS02405 at 552.142 kb on - strand, within LRK53_RS02405 at 552.280 kb on + strand at 552.280 kb on + strand at 552.280 kb on + strand at 552.280 kb on + strand at 552.280 kb on + strand at 552.280 kb on + strand at 552.280 kb on + strand at 552.280 kb on + strand at 552.280 kb on + strand at 552.281 kb on - strand at 552.281 kb on - strand at 552.281 kb on - strand at 552.281 kb on - strand at 552.281 kb on - strand at 552.281 kb on - strand at 552.281 kb on - strand at 552.281 kb on - strand at 552.281 kb on - strand at 552.281 kb on - strand at 552.386 kb on + strand at 552.386 kb on + strand at 552.387 kb on - strand at 552.387 kb on - strand at 552.387 kb on - strand at 552.387 kb on - strand at 552.592 kb on + strand, within LRK53_RS02410 at 552.592 kb on + strand, within LRK53_RS02410 at 552.592 kb on + strand, within LRK53_RS02410 at 552.592 kb on + strand, within LRK53_RS02410 at 552.593 kb on - strand, within LRK53_RS02410 at 552.593 kb on - strand, within LRK53_RS02410 at 552.593 kb on - strand, within LRK53_RS02410 at 552.593 kb on - strand, within LRK53_RS02410 at 552.593 kb on - strand, within LRK53_RS02410 at 552.593 kb on - strand, within LRK53_RS02410 at 552.593 kb on - strand, within LRK53_RS02410 at 552.593 kb on - strand, within LRK53_RS02410 at 552.643 kb on + strand, within LRK53_RS02410 at 552.643 kb on + strand, within LRK53_RS02410 at 552.643 kb on + strand, within LRK53_RS02410 at 552.643 kb on + strand, within LRK53_RS02410 at 552.643 kb on + strand, within LRK53_RS02410 at 552.643 kb on + strand, within LRK53_RS02410 at 552.643 kb on + strand, within LRK53_RS02410 at 552.643 kb on + strand, within LRK53_RS02410 at 552.643 kb on + strand, within LRK53_RS02410 at 552.643 kb on + strand, within LRK53_RS02410 at 552.643 kb on + strand, within LRK53_RS02410 at 552.643 kb on + strand, within LRK53_RS02410 at 552.643 kb on + strand, within LRK53_RS02410 at 552.643 kb on + strand, within LRK53_RS02410 at 552.643 kb on + strand, within LRK53_RS02410 at 552.643 kb on + strand, within LRK53_RS02410 at 552.643 kb on + strand, within LRK53_RS02410 at 552.643 kb on + strand, within LRK53_RS02410 at 552.643 kb on + strand, within LRK53_RS02410 at 552.643 kb on + strand, within LRK53_RS02410 at 552.643 kb on + strand, within LRK53_RS02410 at 552.643 kb on + strand, within LRK53_RS02410 at 552.643 kb on + strand, within LRK53_RS02410 at 552.643 kb on + strand, within LRK53_RS02410 at 552.643 kb on + strand, within LRK53_RS02410 at 552.643 kb on + strand, within LRK53_RS02410 at 552.643 kb on + strand, within LRK53_RS02410 at 552.643 kb on + strand, within LRK53_RS02410 at 552.643 kb on + strand, within LRK53_RS02410 at 552.643 kb on + strand, within LRK53_RS02410 at 552.643 kb on + strand, within LRK53_RS02410 at 552.643 kb on + strand, within LRK53_RS02410 at 552.643 kb on + strand, within LRK53_RS02410 at 552.644 kb on - strand, within LRK53_RS02410 at 552.644 kb on - strand, within LRK53_RS02410 at 552.644 kb on - strand, within LRK53_RS02410 at 552.644 kb on - strand, within LRK53_RS02410 at 552.644 kb on - strand, within LRK53_RS02410 at 552.644 kb on - strand, within LRK53_RS02410 at 552.644 kb on - strand, within LRK53_RS02410 at 552.644 kb on - strand, within LRK53_RS02410 at 552.644 kb on - strand, within LRK53_RS02410 at 552.644 kb on - strand, within LRK53_RS02410 at 552.644 kb on - strand, within LRK53_RS02410 at 552.644 kb on - strand, within LRK53_RS02410 at 552.644 kb on - strand, within LRK53_RS02410 at 552.644 kb on - strand, within LRK53_RS02410 at 552.644 kb on - strand, within LRK53_RS02410 at 552.644 kb on - strand, within LRK53_RS02410 at 552.644 kb on - strand, within LRK53_RS02410 at 552.644 kb on - strand, within LRK53_RS02410 at 552.644 kb on - strand, within LRK53_RS02410 at 552.644 kb on - strand, within LRK53_RS02410 at 552.644 kb on - strand, within LRK53_RS02410 at 552.644 kb on - strand, within LRK53_RS02410 at 552.644 kb on - strand, within LRK53_RS02410 at 552.644 kb on - strand, within LRK53_RS02410 at 552.646 kb on - strand, within LRK53_RS02410 at 552.838 kb on + strand, within LRK53_RS02410 at 552.964 kb on + strand, within LRK53_RS02410 at 552.964 kb on + strand, within LRK53_RS02410 at 552.997 kb on + strand, within LRK53_RS02410 at 552.997 kb on + strand, within LRK53_RS02410 at 552.997 kb on + strand, within LRK53_RS02410 at 552.997 kb on + strand, within LRK53_RS02410 at 552.997 kb on + strand, within LRK53_RS02410 at 552.997 kb on + strand, within LRK53_RS02410 at 552.997 kb on + strand, within LRK53_RS02410 at 552.997 kb on + strand, within LRK53_RS02410 at 552.998 kb on - strand, within LRK53_RS02410 at 552.998 kb on - strand, within LRK53_RS02410 at 552.998 kb on - strand, within LRK53_RS02410 at 552.998 kb on - strand, within LRK53_RS02410 at 552.998 kb on - strand, within LRK53_RS02410 at 553.037 kb on - strand, within LRK53_RS02410 at 553.037 kb on - strand, within LRK53_RS02410 at 553.037 kb on - strand, within LRK53_RS02410 at 553.037 kb on - strand, within LRK53_RS02410 at 553.037 kb on - strand, within LRK53_RS02410 at 553.037 kb on - strand, within LRK53_RS02410 at 553.270 kb on + strand at 553.270 kb on + strand at 553.271 kb on - strand at 553.271 kb on - strand at 553.271 kb on - strand at 553.271 kb on - strand at 553.271 kb on - strand at 553.271 kb on - strand at 553.271 kb on - strand at 553.271 kb on - strand at 553.273 kb on + strand at 553.273 kb on + strand at 553.273 kb on + strand at 553.273 kb on + strand at 553.273 kb on + strand at 553.274 kb on - strand at 553.274 kb on - strand at 553.274 kb on - strand at 553.274 kb on - strand at 553.274 kb on - strand at 553.383 kb on + strand at 553.383 kb on + strand at 553.383 kb on + strand at 553.383 kb on + strand at 553.383 kb on + strand at 553.383 kb on + strand at 553.383 kb on + strand at 553.383 kb on + strand at 553.383 kb on + strand at 553.383 kb on + strand at 553.383 kb on + strand at 553.383 kb on + strand at 553.383 kb on + strand at 553.383 kb on + strand at 553.383 kb on + strand at 553.383 kb on + strand at 553.383 kb on + strand at 553.383 kb on + strand at 553.383 kb on + strand at 553.383 kb on + strand at 553.383 kb on + strand at 553.383 kb on + strand at 553.383 kb on + strand at 553.383 kb on + strand at 553.383 kb on + strand at 553.383 kb on + strand at 553.383 kb on + strand at 553.383 kb on + strand at 553.383 kb on + strand at 553.384 kb on - strand at 553.384 kb on - strand at 553.384 kb on - strand at 553.384 kb on - strand at 553.384 kb on - strand at 553.384 kb on - strand at 553.384 kb on - strand at 553.384 kb on - strand at 553.384 kb on - strand at 553.384 kb on - strand at 553.384 kb on - strand at 553.384 kb on - strand at 553.384 kb on - strand at 553.384 kb on - strand at 553.384 kb on - strand at 553.384 kb on - strand at 553.384 kb on - strand at 553.384 kb on - strand at 553.384 kb on - strand at 553.384 kb on - strand at 553.384 kb on - strand at 553.384 kb on - strand at 553.384 kb on - strand at 553.384 kb on - strand at 553.384 kb on - strand at 553.384 kb on - strand at 553.384 kb on - strand at 553.384 kb on - strand at 553.385 kb on - strand at 553.557 kb on + strand at 553.558 kb on - strand at 553.558 kb on - strand at 553.558 kb on - strand at 553.558 kb on - strand at 553.683 kb on + strand, within LRK53_RS02415 at 553.683 kb on + strand, within LRK53_RS02415 at 553.683 kb on + strand, within LRK53_RS02415 at 553.684 kb on - strand, within LRK53_RS02415 at 553.684 kb on - strand, within LRK53_RS02415 at 553.684 kb on - strand, within LRK53_RS02415 at 553.684 kb on - strand, within LRK53_RS02415 at 553.684 kb on - strand, within LRK53_RS02415 at 553.684 kb on - strand, within LRK53_RS02415 at 553.684 kb on - strand, within LRK53_RS02415 at 553.872 kb on + strand, within LRK53_RS02415 at 553.873 kb on - strand, within LRK53_RS02415 at 553.873 kb on - strand, within LRK53_RS02415 at 553.873 kb on - strand, within LRK53_RS02415 at 553.932 kb on + strand, within LRK53_RS02415 at 553.933 kb on - strand, within LRK53_RS02415 at 553.933 kb on - strand, within LRK53_RS02415 at 553.933 kb on - strand, within LRK53_RS02415 at 553.933 kb on - strand, within LRK53_RS02415 at 553.933 kb on - strand, within LRK53_RS02415 at 553.933 kb on - strand, within LRK53_RS02415 at 553.933 kb on - strand, within LRK53_RS02415 at 553.933 kb on - strand, within LRK53_RS02415 at 553.933 kb on - strand, within LRK53_RS02415 at 553.953 kb on + strand, within LRK53_RS02415 at 553.953 kb on + strand, within LRK53_RS02415 at 553.953 kb on + strand, within LRK53_RS02415 at 553.953 kb on + strand, within LRK53_RS02415 at 553.953 kb on + strand, within LRK53_RS02415 at 553.954 kb on - strand, within LRK53_RS02415 at 553.954 kb on - strand, within LRK53_RS02415 at 553.954 kb on - strand, within LRK53_RS02415 at 553.954 kb on - strand, within LRK53_RS02415 at 553.954 kb on - strand, within LRK53_RS02415 at 553.954 kb on - strand, within LRK53_RS02415 at 553.954 kb on - strand, within LRK53_RS02415 at 554.067 kb on + strand, within LRK53_RS02415 at 554.131 kb on + strand, within LRK53_RS02415 at 554.132 kb on - strand, within LRK53_RS02415 at 554.139 kb on + strand, within LRK53_RS02415 at 554.176 kb on - strand, within LRK53_RS02415
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 551,571 + -0.6 551,571 + +1.1 551,571 + -0.9 551,571 + +0.9 551,571 + +2.2 551,571 + -0.7 551,571 + -0.4 551,571 + -0.9 551,572 - -0.6 551,572 - +0.3 551,646 + +0.8 551,646 + -2.6 551,646 + +0.7 551,646 + -0.4 551,646 + -0.3 551,647 - -2.7 551,863 - LRK53_RS02405 0.41 +0.6 552,090 + LRK53_RS02405 0.75 -2.7 552,091 - LRK53_RS02405 0.75 -0.8 552,091 - LRK53_RS02405 0.75 +0.1 552,091 - LRK53_RS02405 0.75 -0.8 552,141 + LRK53_RS02405 0.82 -0.6 552,141 + LRK53_RS02405 0.82 -1.6 552,142 - LRK53_RS02405 0.82 +0.1 552,142 - LRK53_RS02405 0.82 -1.5 552,142 - LRK53_RS02405 0.82 +0.4 552,142 - LRK53_RS02405 0.82 -1.6 552,280 + +0.1 552,280 + -1.1 552,280 + +1.2 552,280 + -0.5 552,280 + +0.3 552,280 + +0.3 552,280 + -2.2 552,280 + +1.0 552,280 + -0.6 552,281 - -0.9 552,281 - -0.4 552,281 - -1.1 552,281 - +1.0 552,281 - +0.1 552,281 - -0.9 552,281 - -0.9 552,281 - -0.8 552,281 - -0.7 552,281 - -1.1 552,386 + -2.1 552,386 + +0.6 552,387 - -1.2 552,387 - -1.3 552,387 - -0.3 552,387 - +0.7 552,592 + LRK53_RS02410 0.18 -0.7 552,592 + LRK53_RS02410 0.18 -1.5 552,592 + LRK53_RS02410 0.18 -0.2 552,592 + LRK53_RS02410 0.18 -0.2 552,593 - LRK53_RS02410 0.18 -0.8 552,593 - LRK53_RS02410 0.18 -1.0 552,593 - LRK53_RS02410 0.18 -1.7 552,593 - LRK53_RS02410 0.18 -0.4 552,593 - LRK53_RS02410 0.18 -2.4 552,593 - LRK53_RS02410 0.18 +1.8 552,593 - LRK53_RS02410 0.18 +2.4 552,593 - LRK53_RS02410 0.18 -0.0 552,643 + LRK53_RS02410 0.24 -0.5 552,643 + LRK53_RS02410 0.24 +1.1 552,643 + LRK53_RS02410 0.24 -2.2 552,643 + LRK53_RS02410 0.24 -0.1 552,643 + LRK53_RS02410 0.24 +0.8 552,643 + LRK53_RS02410 0.24 -0.0 552,643 + LRK53_RS02410 0.24 -1.5 552,643 + LRK53_RS02410 0.24 -0.2 552,643 + LRK53_RS02410 0.24 -0.5 552,643 + LRK53_RS02410 0.24 +0.0 552,643 + LRK53_RS02410 0.24 +1.9 552,643 + LRK53_RS02410 0.24 +0.5 552,643 + LRK53_RS02410 0.24 +0.8 552,643 + LRK53_RS02410 0.24 -1.8 552,643 + LRK53_RS02410 0.24 -0.4 552,643 + LRK53_RS02410 0.24 -1.2 552,643 + LRK53_RS02410 0.24 +0.8 552,643 + LRK53_RS02410 0.24 -0.4 552,643 + LRK53_RS02410 0.24 -1.3 552,643 + LRK53_RS02410 0.24 -0.1 552,643 + LRK53_RS02410 0.24 +1.6 552,643 + LRK53_RS02410 0.24 +1.6 552,643 + LRK53_RS02410 0.24 -3.5 552,643 + LRK53_RS02410 0.24 -0.4 552,643 + LRK53_RS02410 0.24 -0.9 552,643 + LRK53_RS02410 0.24 +0.3 552,643 + LRK53_RS02410 0.24 -0.9 552,643 + LRK53_RS02410 0.24 +2.0 552,643 + LRK53_RS02410 0.24 +1.2 552,643 + LRK53_RS02410 0.24 +2.1 552,643 + LRK53_RS02410 0.24 -0.3 552,643 + LRK53_RS02410 0.24 +0.2 552,643 + LRK53_RS02410 0.24 +0.3 552,644 - LRK53_RS02410 0.25 -0.6 552,644 - LRK53_RS02410 0.25 -0.2 552,644 - LRK53_RS02410 0.25 -0.5 552,644 - LRK53_RS02410 0.25 +0.2 552,644 - LRK53_RS02410 0.25 -0.1 552,644 - LRK53_RS02410 0.25 -2.1 552,644 - LRK53_RS02410 0.25 +2.6 552,644 - LRK53_RS02410 0.25 +1.6 552,644 - LRK53_RS02410 0.25 -0.8 552,644 - LRK53_RS02410 0.25 -0.8 552,644 - LRK53_RS02410 0.25 +0.5 552,644 - LRK53_RS02410 0.25 -0.5 552,644 - LRK53_RS02410 0.25 +0.1 552,644 - LRK53_RS02410 0.25 -0.4 552,644 - LRK53_RS02410 0.25 -0.2 552,644 - LRK53_RS02410 0.25 -0.1 552,644 - LRK53_RS02410 0.25 -1.8 552,644 - LRK53_RS02410 0.25 +1.0 552,644 - LRK53_RS02410 0.25 -2.3 552,644 - LRK53_RS02410 0.25 -0.3 552,644 - LRK53_RS02410 0.25 -0.4 552,644 - LRK53_RS02410 0.25 +0.2 552,644 - LRK53_RS02410 0.25 -1.2 552,644 - LRK53_RS02410 0.25 +0.3 552,646 - LRK53_RS02410 0.25 -0.6 552,838 + LRK53_RS02410 0.48 +0.4 552,964 + LRK53_RS02410 0.63 +1.2 552,964 + LRK53_RS02410 0.63 +0.7 552,997 + LRK53_RS02410 0.67 +1.8 552,997 + LRK53_RS02410 0.67 -2.0 552,997 + LRK53_RS02410 0.67 -1.2 552,997 + LRK53_RS02410 0.67 +1.1 552,997 + LRK53_RS02410 0.67 -0.0 552,997 + LRK53_RS02410 0.67 -1.5 552,997 + LRK53_RS02410 0.67 -1.2 552,997 + LRK53_RS02410 0.67 -0.2 552,998 - LRK53_RS02410 0.67 -0.4 552,998 - LRK53_RS02410 0.67 -0.4 552,998 - LRK53_RS02410 0.67 -0.8 552,998 - LRK53_RS02410 0.67 +0.2 552,998 - LRK53_RS02410 0.67 -0.6 553,037 - LRK53_RS02410 0.72 -0.9 553,037 - LRK53_RS02410 0.72 -0.0 553,037 - LRK53_RS02410 0.72 -0.1 553,037 - LRK53_RS02410 0.72 +1.7 553,037 - LRK53_RS02410 0.72 +0.4 553,037 - LRK53_RS02410 0.72 +1.4 553,270 + +1.9 553,270 + +1.4 553,271 - -0.5 553,271 - +0.3 553,271 - -0.0 553,271 - -0.4 553,271 - -0.0 553,271 - +0.8 553,271 - +0.4 553,271 - -3.2 553,273 + -0.4 553,273 + +1.1 553,273 + -1.4 553,273 + -0.4 553,273 + +0.2 553,274 - -0.0 553,274 - +1.0 553,274 - +0.8 553,274 - -0.1 553,274 - -1.6 553,383 + +0.2 553,383 + +0.8 553,383 + +0.4 553,383 + +2.1 553,383 + +0.7 553,383 + -0.2 553,383 + -0.1 553,383 + -1.8 553,383 + +0.1 553,383 + +0.4 553,383 + -0.9 553,383 + -0.7 553,383 + +0.6 553,383 + +1.3 553,383 + -2.0 553,383 + -1.9 553,383 + -0.4 553,383 + +0.2 553,383 + -0.8 553,383 + -0.4 553,383 + -0.4 553,383 + -1.5 553,383 + -0.6 553,383 + -1.0 553,383 + +0.4 553,383 + +0.7 553,383 + +0.6 553,383 + +2.2 553,383 + -2.1 553,384 - -0.5 553,384 - -1.7 553,384 - -0.9 553,384 - -0.9 553,384 - -0.8 553,384 - -1.4 553,384 - -0.2 553,384 - +0.8 553,384 - -0.4 553,384 - +1.7 553,384 - -0.1 553,384 - -1.0 553,384 - -0.4 553,384 - +0.2 553,384 - -2.1 553,384 - +1.2 553,384 - +2.1 553,384 - -1.3 553,384 - -1.8 553,384 - -1.5 553,384 - +0.8 553,384 - -0.7 553,384 - +1.3 553,384 - -0.3 553,384 - -0.2 553,384 - -0.4 553,384 - -1.6 553,384 - -1.3 553,385 - +0.4 553,557 + -0.4 553,558 - -0.7 553,558 - -0.4 553,558 - +1.2 553,558 - -0.4 553,683 + LRK53_RS02415 0.21 -0.7 553,683 + LRK53_RS02415 0.21 -2.4 553,683 + LRK53_RS02415 0.21 -1.5 553,684 - LRK53_RS02415 0.21 +1.2 553,684 - LRK53_RS02415 0.21 -0.5 553,684 - LRK53_RS02415 0.21 +0.2 553,684 - LRK53_RS02415 0.21 -0.2 553,684 - LRK53_RS02415 0.21 +0.1 553,684 - LRK53_RS02415 0.21 -2.1 553,684 - LRK53_RS02415 0.21 +0.6 553,872 + LRK53_RS02415 0.45 -0.8 553,873 - LRK53_RS02415 0.46 +0.7 553,873 - LRK53_RS02415 0.46 -1.0 553,873 - LRK53_RS02415 0.46 -0.8 553,932 + LRK53_RS02415 0.53 -0.5 553,933 - LRK53_RS02415 0.53 -1.3 553,933 - LRK53_RS02415 0.53 +0.4 553,933 - LRK53_RS02415 0.53 +1.2 553,933 - LRK53_RS02415 0.53 -0.2 553,933 - LRK53_RS02415 0.53 -0.1 553,933 - LRK53_RS02415 0.53 -3.1 553,933 - LRK53_RS02415 0.53 +0.0 553,933 - LRK53_RS02415 0.53 +0.7 553,933 - LRK53_RS02415 0.53 -1.4 553,953 + LRK53_RS02415 0.56 +0.5 553,953 + LRK53_RS02415 0.56 -0.0 553,953 + LRK53_RS02415 0.56 -0.1 553,953 + LRK53_RS02415 0.56 -1.8 553,953 + LRK53_RS02415 0.56 -0.8 553,954 - LRK53_RS02415 0.56 -0.9 553,954 - LRK53_RS02415 0.56 -1.9 553,954 - LRK53_RS02415 0.56 +0.1 553,954 - LRK53_RS02415 0.56 -0.9 553,954 - LRK53_RS02415 0.56 -1.3 553,954 - LRK53_RS02415 0.56 +0.1 553,954 - LRK53_RS02415 0.56 +0.2 554,067 + LRK53_RS02415 0.71 -1.5 554,131 + LRK53_RS02415 0.79 -1.0 554,132 - LRK53_RS02415 0.79 +1.2 554,139 + LRK53_RS02415 0.80 -0.2 554,176 - LRK53_RS02415 0.85 +0.8
Or see this region's nucleotide sequence