Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS02315

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS02305 and LRK53_RS02310 are separated by 122 nucleotidesLRK53_RS02310 and LRK53_RS02315 are separated by 185 nucleotidesLRK53_RS02315 and LRK53_RS02320 are separated by 7 nucleotidesLRK53_RS02320 and LRK53_RS02325 are separated by 94 nucleotides LRK53_RS02305: LRK53_RS02305 - ATP-dependent protease ATPase subunit HslU, at 532,282 to 533,616 _RS02305 LRK53_RS02310: LRK53_RS02310 - ATP-dependent protease subunit HslV, at 533,739 to 534,275 _RS02310 LRK53_RS02315: LRK53_RS02315 - tyrosine recombinase XerC, at 534,461 to 535,348 _RS02315 LRK53_RS02320: LRK53_RS02320 - DUF484 family protein, at 535,356 to 536,042 _RS02320 LRK53_RS02325: LRK53_RS02325 - diaminopimelate epimerase, at 536,137 to 536,982 _RS02325 Position (kb) 534 535 536Strain fitness (log2 ratio) -2 -1 0 1 2at 533.570 kb on + strandat 533.571 kb on - strandat 533.571 kb on - strandat 533.571 kb on - strandat 533.571 kb on - strandat 533.571 kb on - strandat 533.571 kb on - strandat 533.571 kb on - strandat 533.687 kb on + strandat 533.687 kb on + strandat 533.687 kb on + strandat 533.688 kb on - strandat 533.688 kb on - strandat 533.740 kb on + strandat 533.740 kb on + strandat 533.740 kb on + strandat 533.740 kb on + strandat 533.740 kb on + strandat 533.740 kb on + strandat 533.741 kb on - strandat 533.741 kb on - strandat 533.741 kb on - strandat 533.741 kb on - strandat 533.741 kb on - strandat 533.741 kb on - strandat 533.741 kb on - strandat 533.741 kb on - strandat 533.741 kb on - strandat 533.773 kb on + strandat 533.773 kb on + strandat 533.773 kb on + strandat 533.773 kb on + strandat 533.773 kb on + strandat 533.773 kb on + strandat 533.773 kb on + strandat 533.773 kb on + strandat 533.773 kb on + strandat 533.773 kb on + strandat 533.774 kb on - strandat 533.774 kb on - strandat 533.774 kb on - strandat 534.498 kb on + strandat 534.498 kb on + strandat 534.498 kb on + strandat 534.498 kb on + strandat 534.498 kb on + strandat 534.498 kb on + strandat 534.498 kb on + strandat 534.498 kb on + strandat 534.498 kb on + strandat 534.498 kb on + strandat 534.498 kb on + strandat 534.499 kb on - strandat 534.499 kb on - strandat 534.499 kb on - strandat 534.499 kb on - strandat 534.499 kb on - strandat 534.499 kb on - strandat 534.499 kb on - strandat 534.499 kb on - strandat 534.499 kb on - strandat 534.499 kb on - strandat 534.499 kb on - strandat 534.532 kb on + strandat 534.532 kb on + strandat 534.533 kb on - strandat 534.534 kb on + strandat 534.534 kb on + strandat 534.534 kb on + strandat 534.534 kb on + strandat 534.534 kb on + strandat 534.534 kb on + strandat 534.534 kb on + strandat 534.534 kb on + strandat 534.534 kb on + strandat 534.534 kb on + strandat 534.534 kb on + strandat 534.534 kb on + strandat 534.534 kb on + strandat 534.534 kb on + strandat 534.534 kb on + strandat 534.534 kb on + strandat 534.534 kb on + strandat 534.534 kb on + strandat 534.534 kb on + strandat 534.535 kb on - strandat 534.535 kb on - strandat 534.535 kb on - strandat 534.535 kb on - strandat 534.535 kb on - strandat 534.535 kb on - strandat 534.535 kb on - strandat 534.535 kb on - strandat 534.535 kb on - strandat 534.535 kb on - strandat 534.535 kb on - strandat 534.535 kb on - strandat 534.535 kb on - strandat 534.535 kb on - strandat 534.535 kb on - strandat 534.535 kb on - strandat 534.535 kb on - strandat 534.535 kb on - strandat 534.535 kb on - strandat 534.535 kb on - strandat 534.851 kb on + strand, within LRK53_RS02315at 534.851 kb on + strand, within LRK53_RS02315at 534.852 kb on - strand, within LRK53_RS02315at 534.852 kb on - strand, within LRK53_RS02315at 534.924 kb on + strand, within LRK53_RS02315at 534.924 kb on + strand, within LRK53_RS02315at 534.925 kb on - strand, within LRK53_RS02315at 534.925 kb on - strand, within LRK53_RS02315at 534.925 kb on - strand, within LRK53_RS02315at 534.925 kb on - strand, within LRK53_RS02315at 534.925 kb on - strand, within LRK53_RS02315at 534.925 kb on - strand, within LRK53_RS02315at 535.050 kb on - strand, within LRK53_RS02315at 535.891 kb on + strand, within LRK53_RS02320at 535.891 kb on + strand, within LRK53_RS02320at 535.891 kb on + strand, within LRK53_RS02320at 535.891 kb on + strand, within LRK53_RS02320at 535.891 kb on + strand, within LRK53_RS02320at 535.891 kb on + strand, within LRK53_RS02320at 535.891 kb on + strand, within LRK53_RS02320at 535.891 kb on + strand, within LRK53_RS02320at 535.891 kb on + strand, within LRK53_RS02320at 535.891 kb on + strand, within LRK53_RS02320at 535.891 kb on + strand, within LRK53_RS02320at 535.891 kb on + strand, within LRK53_RS02320at 535.892 kb on - strand, within LRK53_RS02320at 535.892 kb on - strand, within LRK53_RS02320at 535.892 kb on - strand, within LRK53_RS02320at 535.892 kb on - strand, within LRK53_RS02320at 535.892 kb on - strand, within LRK53_RS02320at 535.892 kb on - strand, within LRK53_RS02320at 535.892 kb on - strand, within LRK53_RS02320at 535.892 kb on - strand, within LRK53_RS02320at 535.892 kb on - strand, within LRK53_RS02320at 535.892 kb on - strand, within LRK53_RS02320at 535.892 kb on - strand, within LRK53_RS02320at 535.990 kb on + strandat 535.990 kb on + strandat 535.990 kb on + strandat 535.990 kb on + strandat 535.991 kb on - strandat 535.991 kb on - strandat 535.991 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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533,570 + -1.0
533,571 - -0.5
533,571 - -0.6
533,571 - +0.4
533,571 - -0.5
533,571 - +2.0
533,571 - +0.7
533,571 - +0.6
533,687 + +1.7
533,687 + -1.5
533,687 + +1.9
533,688 - +0.4
533,688 - -0.1
533,740 + -2.2
533,740 + -0.5
533,740 + -1.0
533,740 + -0.6
533,740 + -1.8
533,740 + -0.8
533,741 - -0.7
533,741 - -1.3
533,741 - -0.0
533,741 - +1.5
533,741 - +0.9
533,741 - -1.6
533,741 - -0.9
533,741 - +1.5
533,741 - -0.8
533,773 + -0.5
533,773 + +0.1
533,773 + -0.2
533,773 + -2.0
533,773 + -0.1
533,773 + -1.4
533,773 + +0.4
533,773 + -0.3
533,773 + +2.1
533,773 + +0.4
533,774 - +1.4
533,774 - -0.8
533,774 - +1.6
534,498 + -0.6
534,498 + -0.0
534,498 + +0.5
534,498 + -0.8
534,498 + +2.5
534,498 + -1.0
534,498 + -0.6
534,498 + -0.6
534,498 + -1.2
534,498 + -1.3
534,498 + -0.4
534,499 - -1.5
534,499 - +0.8
534,499 - +0.1
534,499 - +0.4
534,499 - +0.0
534,499 - +0.7
534,499 - -0.3
534,499 - +0.1
534,499 - -0.6
534,499 - -1.2
534,499 - +1.5
534,532 + +0.7
534,532 + -0.4
534,533 - +0.3
534,534 + +0.3
534,534 + +0.9
534,534 + -0.8
534,534 + -0.1
534,534 + +0.1
534,534 + +2.3
534,534 + -1.4
534,534 + -0.9
534,534 + +0.7
534,534 + +0.7
534,534 + -0.5
534,534 + -0.3
534,534 + +0.4
534,534 + -0.9
534,534 + -0.1
534,534 + +1.5
534,534 + -0.5
534,534 + -0.5
534,534 + +1.2
534,535 - +0.3
534,535 - -0.1
534,535 - +0.3
534,535 - +0.0
534,535 - -2.5
534,535 - +0.0
534,535 - +2.0
534,535 - -0.6
534,535 - +0.2
534,535 - +0.7
534,535 - +2.2
534,535 - -0.5
534,535 - +0.0
534,535 - -1.0
534,535 - -0.8
534,535 - +1.9
534,535 - -0.6
534,535 - -1.3
534,535 - +0.1
534,535 - -0.9
534,851 + LRK53_RS02315 0.44 +0.3
534,851 + LRK53_RS02315 0.44 -0.2
534,852 - LRK53_RS02315 0.44 +0.4
534,852 - LRK53_RS02315 0.44 -0.4
534,924 + LRK53_RS02315 0.52 +2.0
534,924 + LRK53_RS02315 0.52 -0.8
534,925 - LRK53_RS02315 0.52 -0.3
534,925 - LRK53_RS02315 0.52 +2.0
534,925 - LRK53_RS02315 0.52 +0.8
534,925 - LRK53_RS02315 0.52 +0.1
534,925 - LRK53_RS02315 0.52 -1.3
534,925 - LRK53_RS02315 0.52 -0.3
535,050 - LRK53_RS02315 0.66 -1.6
535,891 + LRK53_RS02320 0.78 +0.1
535,891 + LRK53_RS02320 0.78 -1.7
535,891 + LRK53_RS02320 0.78 -0.8
535,891 + LRK53_RS02320 0.78 -0.9
535,891 + LRK53_RS02320 0.78 -0.2
535,891 + LRK53_RS02320 0.78 -2.2
535,891 + LRK53_RS02320 0.78 +0.1
535,891 + LRK53_RS02320 0.78 -2.0
535,891 + LRK53_RS02320 0.78 -0.3
535,891 + LRK53_RS02320 0.78 +0.1
535,891 + LRK53_RS02320 0.78 -0.2
535,891 + LRK53_RS02320 0.78 -0.3
535,892 - LRK53_RS02320 0.78 -2.1
535,892 - LRK53_RS02320 0.78 -2.0
535,892 - LRK53_RS02320 0.78 +0.1
535,892 - LRK53_RS02320 0.78 +1.9
535,892 - LRK53_RS02320 0.78 -1.2
535,892 - LRK53_RS02320 0.78 -0.4
535,892 - LRK53_RS02320 0.78 -1.8
535,892 - LRK53_RS02320 0.78 -0.9
535,892 - LRK53_RS02320 0.78 -1.3
535,892 - LRK53_RS02320 0.78 -1.4
535,892 - LRK53_RS02320 0.78 -0.0
535,990 + +1.3
535,990 + +0.8
535,990 + +0.2
535,990 + -0.8
535,991 - +2.3
535,991 - -1.3
535,991 - -1.0

Or see this region's nucleotide sequence