Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS02290 and LRK53_RS02295 are separated by 0 nucleotides LRK53_RS02295 and LRK53_RS02300 are separated by 156 nucleotides LRK53_RS02300 and LRK53_RS02305 are separated by 27 nucleotides
LRK53_RS02290: LRK53_RS02290 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE, at 529,228 to 530,571
_RS02290
LRK53_RS02295: LRK53_RS02295 - ribokinase, at 530,572 to 531,468
_RS02295
LRK53_RS02300: LRK53_RS02300 - hypothetical protein, at 531,625 to 532,254
_RS02300
LRK53_RS02305: LRK53_RS02305 - ATP-dependent protease ATPase subunit HslU, at 532,282 to 533,616
_RS02305
Position (kb) 530
531
532 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 529.734 kb on + strand, within LRK53_RS02290 at 529.735 kb on - strand, within LRK53_RS02290 at 529.859 kb on + strand, within LRK53_RS02290 at 529.977 kb on + strand, within LRK53_RS02290 at 530.515 kb on + strand at 530.516 kb on - strand at 530.516 kb on - strand at 530.676 kb on + strand, within LRK53_RS02295 at 530.677 kb on - strand, within LRK53_RS02295 at 530.677 kb on - strand, within LRK53_RS02295 at 530.836 kb on + strand, within LRK53_RS02295 at 530.836 kb on + strand, within LRK53_RS02295 at 530.837 kb on - strand, within LRK53_RS02295 at 530.837 kb on - strand, within LRK53_RS02295 at 530.837 kb on - strand, within LRK53_RS02295 at 530.837 kb on - strand, within LRK53_RS02295 at 530.933 kb on + strand, within LRK53_RS02295 at 530.933 kb on + strand, within LRK53_RS02295 at 530.933 kb on + strand, within LRK53_RS02295 at 530.934 kb on - strand, within LRK53_RS02295 at 530.934 kb on - strand, within LRK53_RS02295 at 530.934 kb on - strand, within LRK53_RS02295 at 531.435 kb on + strand at 531.435 kb on + strand at 531.435 kb on + strand at 531.435 kb on + strand at 531.435 kb on + strand at 531.435 kb on + strand at 531.435 kb on + strand at 531.436 kb on - strand at 531.436 kb on - strand at 531.436 kb on - strand at 531.436 kb on - strand at 531.436 kb on - strand at 531.436 kb on - strand at 531.436 kb on - strand at 531.436 kb on - strand at 531.436 kb on - strand at 531.436 kb on - strand at 531.436 kb on - strand at 531.510 kb on + strand at 531.511 kb on - strand at 531.511 kb on - strand at 531.710 kb on + strand, within LRK53_RS02300 at 531.710 kb on + strand, within LRK53_RS02300 at 531.711 kb on - strand, within LRK53_RS02300 at 531.842 kb on + strand, within LRK53_RS02300 at 531.843 kb on - strand, within LRK53_RS02300 at 531.843 kb on - strand, within LRK53_RS02300 at 531.843 kb on - strand, within LRK53_RS02300 at 531.843 kb on - strand, within LRK53_RS02300 at 532.052 kb on + strand, within LRK53_RS02300 at 532.052 kb on + strand, within LRK53_RS02300 at 532.052 kb on + strand, within LRK53_RS02300 at 532.052 kb on + strand, within LRK53_RS02300 at 532.052 kb on + strand, within LRK53_RS02300 at 532.052 kb on + strand, within LRK53_RS02300 at 532.052 kb on + strand, within LRK53_RS02300 at 532.052 kb on + strand, within LRK53_RS02300 at 532.052 kb on + strand, within LRK53_RS02300 at 532.053 kb on - strand, within LRK53_RS02300 at 532.053 kb on - strand, within LRK53_RS02300 at 532.053 kb on - strand, within LRK53_RS02300 at 532.053 kb on - strand, within LRK53_RS02300 at 532.053 kb on - strand, within LRK53_RS02300 at 532.053 kb on - strand, within LRK53_RS02300 at 532.053 kb on - strand, within LRK53_RS02300 at 532.053 kb on - strand, within LRK53_RS02300 at 532.053 kb on - strand, within LRK53_RS02300 at 532.053 kb on - strand, within LRK53_RS02300 at 532.053 kb on - strand, within LRK53_RS02300 at 532.233 kb on + strand at 532.425 kb on + strand, within LRK53_RS02305 at 532.426 kb on - strand, within LRK53_RS02305
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 529,734 + LRK53_RS02290 0.38 +0.9 529,735 - LRK53_RS02290 0.38 -0.9 529,859 + LRK53_RS02290 0.47 +0.0 529,977 + LRK53_RS02290 0.56 -0.5 530,515 + -0.0 530,516 - -1.9 530,516 - -0.0 530,676 + LRK53_RS02295 0.12 +1.3 530,677 - LRK53_RS02295 0.12 +0.7 530,677 - LRK53_RS02295 0.12 -1.4 530,836 + LRK53_RS02295 0.29 +0.5 530,836 + LRK53_RS02295 0.29 +2.7 530,837 - LRK53_RS02295 0.30 +2.0 530,837 - LRK53_RS02295 0.30 -0.5 530,837 - LRK53_RS02295 0.30 -0.5 530,837 - LRK53_RS02295 0.30 -1.0 530,933 + LRK53_RS02295 0.40 -0.7 530,933 + LRK53_RS02295 0.40 -1.1 530,933 + LRK53_RS02295 0.40 +1.0 530,934 - LRK53_RS02295 0.40 -1.0 530,934 - LRK53_RS02295 0.40 +0.4 530,934 - LRK53_RS02295 0.40 +1.3 531,435 + -0.2 531,435 + +0.7 531,435 + -1.5 531,435 + +0.1 531,435 + +1.1 531,435 + -1.3 531,435 + -0.1 531,436 - -2.5 531,436 - +1.1 531,436 - -1.1 531,436 - -0.2 531,436 - -1.4 531,436 - -1.2 531,436 - -1.5 531,436 - +0.8 531,436 - -0.6 531,436 - -1.1 531,436 - -0.2 531,510 + -2.8 531,511 - +0.5 531,511 - +0.4 531,710 + LRK53_RS02300 0.13 -0.1 531,710 + LRK53_RS02300 0.13 -0.3 531,711 - LRK53_RS02300 0.14 +0.5 531,842 + LRK53_RS02300 0.34 -0.9 531,843 - LRK53_RS02300 0.35 -1.4 531,843 - LRK53_RS02300 0.35 -0.2 531,843 - LRK53_RS02300 0.35 -0.9 531,843 - LRK53_RS02300 0.35 +2.1 532,052 + LRK53_RS02300 0.68 -0.6 532,052 + LRK53_RS02300 0.68 -1.1 532,052 + LRK53_RS02300 0.68 +1.7 532,052 + LRK53_RS02300 0.68 -1.2 532,052 + LRK53_RS02300 0.68 +0.4 532,052 + LRK53_RS02300 0.68 -0.3 532,052 + LRK53_RS02300 0.68 -1.0 532,052 + LRK53_RS02300 0.68 -1.1 532,052 + LRK53_RS02300 0.68 +0.1 532,053 - LRK53_RS02300 0.68 -1.4 532,053 - LRK53_RS02300 0.68 -0.1 532,053 - LRK53_RS02300 0.68 +1.7 532,053 - LRK53_RS02300 0.68 -0.8 532,053 - LRK53_RS02300 0.68 -0.3 532,053 - LRK53_RS02300 0.68 +0.4 532,053 - LRK53_RS02300 0.68 +2.3 532,053 - LRK53_RS02300 0.68 -1.1 532,053 - LRK53_RS02300 0.68 +0.7 532,053 - LRK53_RS02300 0.68 +1.1 532,053 - LRK53_RS02300 0.68 -1.7 532,233 + +0.2 532,425 + LRK53_RS02305 0.11 +0.5 532,426 - LRK53_RS02305 0.11 +0.4
Or see this region's nucleotide sequence