Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS02260 and LRK53_RS02265 overlap by 4 nucleotides LRK53_RS02265 and LRK53_RS02270 overlap by 4 nucleotides LRK53_RS02270 and LRK53_RS02275 are separated by 103 nucleotides LRK53_RS02275 and LRK53_RS02280 are separated by 68 nucleotides
LRK53_RS02260: LRK53_RS02260 - glycosyltransferase family 2 protein, at 523,980 to 524,765
_RS02260
LRK53_RS02265: LRK53_RS02265 - beta-ketoacyl synthase chain length factor, at 524,762 to 525,556
_RS02265
LRK53_RS02270: LRK53_RS02270 - beta-ketoacyl-[acyl-carrier-protein] synthase family protein, at 525,553 to 526,746
_RS02270
LRK53_RS02275: LRK53_RS02275 - YdcF family protein, at 526,850 to 527,587
_RS02275
LRK53_RS02280: LRK53_RS02280 - hypothetical protein, at 527,656 to 528,168
_RS02280
Position (kb) 525
526
527 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 524.785 kb on + strand at 524.785 kb on + strand at 524.786 kb on - strand at 524.786 kb on - strand at 524.786 kb on - strand at 524.786 kb on - strand at 524.786 kb on - strand at 524.800 kb on + strand at 524.800 kb on + strand at 524.800 kb on + strand at 524.801 kb on - strand at 525.276 kb on + strand, within LRK53_RS02265 at 525.276 kb on + strand, within LRK53_RS02265 at 525.276 kb on + strand, within LRK53_RS02265 at 525.276 kb on + strand, within LRK53_RS02265 at 525.276 kb on + strand, within LRK53_RS02265 at 525.276 kb on + strand, within LRK53_RS02265 at 525.276 kb on + strand, within LRK53_RS02265 at 525.276 kb on + strand, within LRK53_RS02265 at 525.276 kb on + strand, within LRK53_RS02265 at 525.277 kb on - strand, within LRK53_RS02265 at 525.277 kb on - strand, within LRK53_RS02265 at 525.277 kb on - strand, within LRK53_RS02265 at 525.277 kb on - strand, within LRK53_RS02265 at 525.277 kb on - strand, within LRK53_RS02265 at 525.277 kb on - strand, within LRK53_RS02265 at 525.277 kb on - strand, within LRK53_RS02265 at 525.277 kb on - strand, within LRK53_RS02265 at 525.277 kb on - strand, within LRK53_RS02265 at 525.277 kb on - strand, within LRK53_RS02265 at 525.277 kb on - strand, within LRK53_RS02265 at 525.277 kb on - strand, within LRK53_RS02265 at 525.277 kb on - strand, within LRK53_RS02265 at 525.277 kb on - strand, within LRK53_RS02265 at 525.277 kb on - strand, within LRK53_RS02265 at 525.277 kb on - strand, within LRK53_RS02265 at 525.277 kb on - strand, within LRK53_RS02265 at 525.277 kb on - strand, within LRK53_RS02265 at 525.277 kb on - strand, within LRK53_RS02265 at 525.277 kb on - strand, within LRK53_RS02265 at 525.277 kb on - strand, within LRK53_RS02265 at 525.277 kb on - strand, within LRK53_RS02265 at 525.277 kb on - strand, within LRK53_RS02265 at 525.277 kb on - strand, within LRK53_RS02265 at 525.539 kb on + strand at 525.540 kb on - strand at 525.893 kb on + strand, within LRK53_RS02270 at 525.893 kb on + strand, within LRK53_RS02270 at 525.893 kb on + strand, within LRK53_RS02270 at 525.894 kb on - strand, within LRK53_RS02270 at 525.894 kb on - strand, within LRK53_RS02270 at 525.894 kb on - strand, within LRK53_RS02270 at 525.894 kb on - strand, within LRK53_RS02270 at 525.894 kb on - strand, within LRK53_RS02270 at 525.894 kb on - strand, within LRK53_RS02270 at 525.894 kb on - strand, within LRK53_RS02270 at 525.894 kb on - strand, within LRK53_RS02270 at 525.894 kb on - strand, within LRK53_RS02270 at 525.894 kb on - strand, within LRK53_RS02270 at 525.894 kb on - strand, within LRK53_RS02270 at 525.894 kb on - strand, within LRK53_RS02270 at 525.989 kb on + strand, within LRK53_RS02270 at 525.989 kb on + strand, within LRK53_RS02270 at 525.989 kb on + strand, within LRK53_RS02270 at 525.990 kb on - strand, within LRK53_RS02270 at 525.990 kb on - strand, within LRK53_RS02270 at 526.721 kb on + strand at 526.721 kb on + strand at 526.721 kb on + strand at 526.721 kb on + strand at 526.721 kb on + strand at 526.722 kb on - strand at 526.722 kb on - strand at 526.722 kb on - strand at 526.722 kb on - strand at 526.722 kb on - strand at 526.792 kb on + strand at 526.792 kb on + strand at 526.792 kb on + strand at 526.792 kb on + strand at 526.793 kb on - strand at 526.793 kb on - strand at 526.793 kb on - strand at 526.793 kb on - strand at 526.793 kb on - strand at 526.793 kb on - strand at 526.793 kb on - strand at 526.793 kb on - strand at 526.849 kb on + strand at 526.849 kb on + strand at 526.849 kb on + strand at 526.850 kb on - strand at 526.922 kb on + strand at 526.923 kb on - strand at 526.923 kb on - strand at 526.923 kb on - strand at 526.946 kb on + strand, within LRK53_RS02275 at 526.946 kb on + strand, within LRK53_RS02275 at 526.946 kb on + strand, within LRK53_RS02275 at 526.946 kb on + strand, within LRK53_RS02275 at 526.947 kb on - strand, within LRK53_RS02275 at 526.947 kb on - strand, within LRK53_RS02275 at 526.947 kb on - strand, within LRK53_RS02275 at 527.006 kb on + strand, within LRK53_RS02275 at 527.007 kb on - strand, within LRK53_RS02275 at 527.007 kb on - strand, within LRK53_RS02275 at 527.007 kb on - strand, within LRK53_RS02275 at 527.118 kb on - strand, within LRK53_RS02275 at 527.481 kb on - strand, within LRK53_RS02275 at 527.510 kb on + strand, within LRK53_RS02275 at 527.510 kb on + strand, within LRK53_RS02275 at 527.510 kb on + strand, within LRK53_RS02275 at 527.510 kb on + strand, within LRK53_RS02275 at 527.510 kb on + strand, within LRK53_RS02275 at 527.510 kb on + strand, within LRK53_RS02275 at 527.511 kb on - strand, within LRK53_RS02275 at 527.511 kb on - strand, within LRK53_RS02275 at 527.511 kb on - strand, within LRK53_RS02275 at 527.511 kb on - strand, within LRK53_RS02275
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 524,785 + -0.3 524,785 + +0.4 524,786 - +2.0 524,786 - -0.5 524,786 - +0.4 524,786 - +2.0 524,786 - -0.3 524,800 + +0.8 524,800 + -1.6 524,800 + -0.1 524,801 - -1.8 525,276 + LRK53_RS02265 0.65 -1.7 525,276 + LRK53_RS02265 0.65 +1.3 525,276 + LRK53_RS02265 0.65 -2.0 525,276 + LRK53_RS02265 0.65 +2.3 525,276 + LRK53_RS02265 0.65 +1.9 525,276 + LRK53_RS02265 0.65 -1.0 525,276 + LRK53_RS02265 0.65 -0.1 525,276 + LRK53_RS02265 0.65 -3.6 525,276 + LRK53_RS02265 0.65 -1.8 525,277 - LRK53_RS02265 0.65 -0.7 525,277 - LRK53_RS02265 0.65 +0.0 525,277 - LRK53_RS02265 0.65 -2.2 525,277 - LRK53_RS02265 0.65 -0.4 525,277 - LRK53_RS02265 0.65 -0.5 525,277 - LRK53_RS02265 0.65 -0.8 525,277 - LRK53_RS02265 0.65 -1.0 525,277 - LRK53_RS02265 0.65 +0.4 525,277 - LRK53_RS02265 0.65 -1.5 525,277 - LRK53_RS02265 0.65 +0.4 525,277 - LRK53_RS02265 0.65 -0.3 525,277 - LRK53_RS02265 0.65 -0.1 525,277 - LRK53_RS02265 0.65 +1.2 525,277 - LRK53_RS02265 0.65 +2.3 525,277 - LRK53_RS02265 0.65 +0.7 525,277 - LRK53_RS02265 0.65 +0.2 525,277 - LRK53_RS02265 0.65 -1.6 525,277 - LRK53_RS02265 0.65 -0.2 525,277 - LRK53_RS02265 0.65 +1.6 525,277 - LRK53_RS02265 0.65 -1.1 525,277 - LRK53_RS02265 0.65 +0.2 525,277 - LRK53_RS02265 0.65 -2.2 525,277 - LRK53_RS02265 0.65 -0.9 525,277 - LRK53_RS02265 0.65 -0.7 525,539 + +0.6 525,540 - -1.2 525,893 + LRK53_RS02270 0.28 -0.5 525,893 + LRK53_RS02270 0.28 -0.9 525,893 + LRK53_RS02270 0.28 -1.6 525,894 - LRK53_RS02270 0.29 -0.8 525,894 - LRK53_RS02270 0.29 +0.2 525,894 - LRK53_RS02270 0.29 -1.0 525,894 - LRK53_RS02270 0.29 -0.5 525,894 - LRK53_RS02270 0.29 -2.9 525,894 - LRK53_RS02270 0.29 -0.8 525,894 - LRK53_RS02270 0.29 -2.6 525,894 - LRK53_RS02270 0.29 +0.7 525,894 - LRK53_RS02270 0.29 +0.3 525,894 - LRK53_RS02270 0.29 -0.9 525,894 - LRK53_RS02270 0.29 -0.3 525,894 - LRK53_RS02270 0.29 -2.5 525,989 + LRK53_RS02270 0.37 +0.2 525,989 + LRK53_RS02270 0.37 -0.3 525,989 + LRK53_RS02270 0.37 -0.8 525,990 - LRK53_RS02270 0.37 +0.4 525,990 - LRK53_RS02270 0.37 -1.6 526,721 + +0.8 526,721 + +0.7 526,721 + +0.0 526,721 + -1.0 526,721 + -0.7 526,722 - +0.3 526,722 - -0.6 526,722 - -0.2 526,722 - -0.4 526,722 - +0.9 526,792 + -0.9 526,792 + -2.4 526,792 + +0.7 526,792 + -1.4 526,793 - -0.8 526,793 - -1.0 526,793 - -0.1 526,793 - -2.1 526,793 - -1.4 526,793 - -0.5 526,793 - -2.2 526,793 - -1.8 526,849 + -3.0 526,849 + -1.1 526,849 + -1.2 526,850 - +0.1 526,922 + +0.5 526,923 - -2.7 526,923 - -0.1 526,923 - +0.6 526,946 + LRK53_RS02275 0.13 -0.8 526,946 + LRK53_RS02275 0.13 +0.8 526,946 + LRK53_RS02275 0.13 -0.3 526,946 + LRK53_RS02275 0.13 +1.9 526,947 - LRK53_RS02275 0.13 +0.1 526,947 - LRK53_RS02275 0.13 -1.4 526,947 - LRK53_RS02275 0.13 -1.2 527,006 + LRK53_RS02275 0.21 +0.3 527,007 - LRK53_RS02275 0.21 +0.7 527,007 - LRK53_RS02275 0.21 -0.6 527,007 - LRK53_RS02275 0.21 -1.7 527,118 - LRK53_RS02275 0.36 -0.5 527,481 - LRK53_RS02275 0.86 -0.6 527,510 + LRK53_RS02275 0.89 -0.2 527,510 + LRK53_RS02275 0.89 -0.3 527,510 + LRK53_RS02275 0.89 +1.0 527,510 + LRK53_RS02275 0.89 -0.8 527,510 + LRK53_RS02275 0.89 -1.5 527,510 + LRK53_RS02275 0.89 -1.0 527,511 - LRK53_RS02275 0.90 -1.0 527,511 - LRK53_RS02275 0.90 -0.4 527,511 - LRK53_RS02275 0.90 +0.5 527,511 - LRK53_RS02275 0.90 -2.5
Or see this region's nucleotide sequence