Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS02245 and LRK53_RS02250 overlap by 17 nucleotides LRK53_RS02250 and LRK53_RS02255 are separated by 19 nucleotides LRK53_RS02255 and LRK53_RS02260 are separated by 148 nucleotides
LRK53_RS02245: LRK53_RS02245 - MMPL family transporter, at 520,338 to 522,656
_RS02245
LRK53_RS02250: LRK53_RS02250 - phosphotransferase, at 522,640 to 523,074
_RS02250
LRK53_RS02255: LRK53_RS02255 - 3-oxoacyl-ACP reductase FabG, at 523,094 to 523,831
_RS02255
LRK53_RS02260: LRK53_RS02260 - glycosyltransferase family 2 protein, at 523,980 to 524,765
_RS02260
Position (kb) 522
523
524 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 521.737 kb on - strand, within LRK53_RS02245 at 521.737 kb on - strand, within LRK53_RS02245 at 521.737 kb on - strand, within LRK53_RS02245 at 521.747 kb on - strand, within LRK53_RS02245 at 521.747 kb on - strand, within LRK53_RS02245 at 522.037 kb on - strand, within LRK53_RS02245 at 522.222 kb on + strand, within LRK53_RS02245 at 522.222 kb on + strand, within LRK53_RS02245 at 522.438 kb on + strand at 522.438 kb on + strand at 522.439 kb on - strand at 522.439 kb on - strand at 522.439 kb on - strand at 522.439 kb on - strand at 522.815 kb on - strand, within LRK53_RS02250 at 522.878 kb on + strand, within LRK53_RS02250 at 522.878 kb on + strand, within LRK53_RS02250 at 522.878 kb on + strand, within LRK53_RS02250 at 522.878 kb on + strand, within LRK53_RS02250 at 522.878 kb on + strand, within LRK53_RS02250 at 522.879 kb on - strand, within LRK53_RS02250 at 522.879 kb on - strand, within LRK53_RS02250 at 522.879 kb on - strand, within LRK53_RS02250 at 522.879 kb on - strand, within LRK53_RS02250 at 522.928 kb on + strand, within LRK53_RS02250 at 522.928 kb on + strand, within LRK53_RS02250 at 522.928 kb on + strand, within LRK53_RS02250 at 522.928 kb on + strand, within LRK53_RS02250 at 522.928 kb on + strand, within LRK53_RS02250 at 522.928 kb on + strand, within LRK53_RS02250 at 522.928 kb on + strand, within LRK53_RS02250 at 522.928 kb on + strand, within LRK53_RS02250 at 522.928 kb on + strand, within LRK53_RS02250 at 522.928 kb on + strand, within LRK53_RS02250 at 522.928 kb on + strand, within LRK53_RS02250 at 522.928 kb on + strand, within LRK53_RS02250 at 522.928 kb on + strand, within LRK53_RS02250 at 522.929 kb on - strand, within LRK53_RS02250 at 522.929 kb on - strand, within LRK53_RS02250 at 522.929 kb on - strand, within LRK53_RS02250 at 522.929 kb on - strand, within LRK53_RS02250 at 522.929 kb on - strand, within LRK53_RS02250 at 522.929 kb on - strand, within LRK53_RS02250 at 522.929 kb on - strand, within LRK53_RS02250 at 522.929 kb on - strand, within LRK53_RS02250 at 522.976 kb on + strand, within LRK53_RS02250 at 522.977 kb on - strand, within LRK53_RS02250 at 522.977 kb on - strand, within LRK53_RS02250 at 523.000 kb on + strand, within LRK53_RS02250 at 523.000 kb on + strand, within LRK53_RS02250 at 523.001 kb on - strand, within LRK53_RS02250 at 523.001 kb on - strand, within LRK53_RS02250 at 523.001 kb on - strand, within LRK53_RS02250 at 523.001 kb on - strand, within LRK53_RS02250 at 523.001 kb on - strand, within LRK53_RS02250 at 523.001 kb on - strand, within LRK53_RS02250 at 523.559 kb on + strand, within LRK53_RS02255 at 523.559 kb on + strand, within LRK53_RS02255 at 523.559 kb on + strand, within LRK53_RS02255 at 523.559 kb on + strand, within LRK53_RS02255 at 523.560 kb on - strand, within LRK53_RS02255 at 523.560 kb on - strand, within LRK53_RS02255 at 523.560 kb on - strand, within LRK53_RS02255 at 523.560 kb on - strand, within LRK53_RS02255 at 523.560 kb on - strand, within LRK53_RS02255 at 523.787 kb on + strand at 523.787 kb on + strand at 523.788 kb on - strand at 523.788 kb on - strand at 523.788 kb on - strand at 523.788 kb on - strand at 523.788 kb on - strand at 523.788 kb on - strand at 523.788 kb on - strand at 523.788 kb on - strand at 523.872 kb on + strand at 523.872 kb on + strand at 523.872 kb on + strand at 523.872 kb on + strand at 523.873 kb on - strand at 523.873 kb on - strand at 523.873 kb on - strand at 523.873 kb on - strand at 523.873 kb on - strand at 523.873 kb on - strand at 523.873 kb on - strand at 523.873 kb on - strand at 523.873 kb on - strand at 523.961 kb on + strand at 524.060 kb on - strand, within LRK53_RS02260
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 521,737 - LRK53_RS02245 0.60 -0.8 521,737 - LRK53_RS02245 0.60 -1.2 521,737 - LRK53_RS02245 0.60 +0.6 521,747 - LRK53_RS02245 0.61 -0.9 521,747 - LRK53_RS02245 0.61 -0.5 522,037 - LRK53_RS02245 0.73 +0.1 522,222 + LRK53_RS02245 0.81 +0.3 522,222 + LRK53_RS02245 0.81 -1.7 522,438 + -2.5 522,438 + -0.4 522,439 - +1.2 522,439 - +0.4 522,439 - -1.3 522,439 - -0.0 522,815 - LRK53_RS02250 0.40 -0.5 522,878 + LRK53_RS02250 0.55 -2.4 522,878 + LRK53_RS02250 0.55 -1.9 522,878 + LRK53_RS02250 0.55 -0.9 522,878 + LRK53_RS02250 0.55 -0.9 522,878 + LRK53_RS02250 0.55 -2.2 522,879 - LRK53_RS02250 0.55 -0.9 522,879 - LRK53_RS02250 0.55 +1.3 522,879 - LRK53_RS02250 0.55 -0.5 522,879 - LRK53_RS02250 0.55 -0.1 522,928 + LRK53_RS02250 0.66 -3.0 522,928 + LRK53_RS02250 0.66 +0.9 522,928 + LRK53_RS02250 0.66 -0.2 522,928 + LRK53_RS02250 0.66 -1.2 522,928 + LRK53_RS02250 0.66 +0.0 522,928 + LRK53_RS02250 0.66 +0.1 522,928 + LRK53_RS02250 0.66 -1.7 522,928 + LRK53_RS02250 0.66 -0.8 522,928 + LRK53_RS02250 0.66 -0.6 522,928 + LRK53_RS02250 0.66 +0.9 522,928 + LRK53_RS02250 0.66 +0.3 522,928 + LRK53_RS02250 0.66 -0.7 522,928 + LRK53_RS02250 0.66 -0.1 522,929 - LRK53_RS02250 0.66 +0.4 522,929 - LRK53_RS02250 0.66 -2.4 522,929 - LRK53_RS02250 0.66 -0.6 522,929 - LRK53_RS02250 0.66 -0.8 522,929 - LRK53_RS02250 0.66 -0.7 522,929 - LRK53_RS02250 0.66 +0.0 522,929 - LRK53_RS02250 0.66 -1.7 522,929 - LRK53_RS02250 0.66 -2.0 522,976 + LRK53_RS02250 0.77 -0.9 522,977 - LRK53_RS02250 0.77 -1.6 522,977 - LRK53_RS02250 0.77 -2.3 523,000 + LRK53_RS02250 0.83 -1.1 523,000 + LRK53_RS02250 0.83 -1.0 523,001 - LRK53_RS02250 0.83 +0.3 523,001 - LRK53_RS02250 0.83 +1.1 523,001 - LRK53_RS02250 0.83 -0.6 523,001 - LRK53_RS02250 0.83 -0.9 523,001 - LRK53_RS02250 0.83 -1.4 523,001 - LRK53_RS02250 0.83 -0.5 523,559 + LRK53_RS02255 0.63 +1.2 523,559 + LRK53_RS02255 0.63 -0.8 523,559 + LRK53_RS02255 0.63 -2.2 523,559 + LRK53_RS02255 0.63 +0.7 523,560 - LRK53_RS02255 0.63 -0.4 523,560 - LRK53_RS02255 0.63 -1.8 523,560 - LRK53_RS02255 0.63 +0.7 523,560 - LRK53_RS02255 0.63 +1.0 523,560 - LRK53_RS02255 0.63 -1.2 523,787 + -1.3 523,787 + -0.5 523,788 - -0.6 523,788 - -2.1 523,788 - +1.9 523,788 - +0.3 523,788 - +0.3 523,788 - +0.3 523,788 - -0.6 523,788 - -0.5 523,872 + -1.0 523,872 + -0.3 523,872 + +1.9 523,872 + +2.1 523,873 - -0.5 523,873 - +0.8 523,873 - -0.1 523,873 - +0.4 523,873 - -1.8 523,873 - +1.1 523,873 - +0.4 523,873 - +0.3 523,873 - -0.5 523,961 + -0.1 524,060 - LRK53_RS02260 0.10 +1.0
Or see this region's nucleotide sequence