Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS02140

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS02125 and LRK53_RS02130 overlap by 4 nucleotidesLRK53_RS02130 and LRK53_RS02135 overlap by 4 nucleotidesLRK53_RS02135 and LRK53_RS02140 are separated by 2 nucleotidesLRK53_RS02140 and LRK53_RS02145 are separated by 5 nucleotidesLRK53_RS02145 and LRK53_RS02150 are separated by 608 nucleotides LRK53_RS02125: LRK53_RS02125 - DUF3987 domain-containing protein, at 502,132 to 503,655 _RS02125 LRK53_RS02130: LRK53_RS02130 - hypothetical protein, at 503,652 to 503,822 _RS02130 LRK53_RS02135: LRK53_RS02135 - hypothetical protein, at 503,819 to 504,109 _RS02135 LRK53_RS02140: LRK53_RS02140 - hypothetical protein, at 504,112 to 504,528 _RS02140 LRK53_RS02145: LRK53_RS02145 - hypothetical protein, at 504,534 to 504,866 _RS02145 LRK53_RS02150: LRK53_RS02150 - 6-carboxytetrahydropterin synthase QueD, at 505,475 to 505,837 _RS02150 Position (kb) 504 505Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 503.202 kb on + strand, within LRK53_RS02125at 503.203 kb on - strand, within LRK53_RS02125at 503.203 kb on - strand, within LRK53_RS02125at 503.203 kb on - strand, within LRK53_RS02125at 503.277 kb on + strand, within LRK53_RS02125at 503.278 kb on - strand, within LRK53_RS02125at 503.278 kb on - strand, within LRK53_RS02125at 503.278 kb on - strand, within LRK53_RS02125at 503.278 kb on - strand, within LRK53_RS02125at 503.278 kb on - strand, within LRK53_RS02125at 503.278 kb on - strand, within LRK53_RS02125at 503.295 kb on - strand, within LRK53_RS02125at 503.386 kb on + strand, within LRK53_RS02125at 503.414 kb on + strand, within LRK53_RS02125at 503.414 kb on + strand, within LRK53_RS02125at 503.414 kb on + strand, within LRK53_RS02125at 503.414 kb on + strand, within LRK53_RS02125at 503.429 kb on - strand, within LRK53_RS02125at 503.429 kb on - strand, within LRK53_RS02125at 503.429 kb on - strand, within LRK53_RS02125at 503.470 kb on + strand, within LRK53_RS02125at 503.470 kb on + strand, within LRK53_RS02125at 503.470 kb on + strand, within LRK53_RS02125at 503.503 kb on + strandat 503.503 kb on + strandat 503.503 kb on + strandat 503.503 kb on + strandat 503.503 kb on + strandat 503.503 kb on + strandat 503.503 kb on + strandat 503.503 kb on + strandat 503.503 kb on + strandat 503.503 kb on + strandat 503.503 kb on + strandat 503.503 kb on + strandat 503.503 kb on + strandat 503.503 kb on + strandat 503.503 kb on + strandat 503.503 kb on + strandat 503.503 kb on + strandat 503.503 kb on + strandat 503.504 kb on - strandat 503.504 kb on - strandat 503.504 kb on - strandat 503.504 kb on - strandat 503.504 kb on - strandat 503.504 kb on - strandat 503.504 kb on - strandat 503.504 kb on - strandat 503.504 kb on - strandat 503.504 kb on - strandat 503.504 kb on - strandat 503.504 kb on - strandat 503.504 kb on - strandat 503.504 kb on - strandat 503.504 kb on - strandat 503.504 kb on - strandat 503.504 kb on - strandat 503.504 kb on - strandat 503.507 kb on + strandat 503.507 kb on + strandat 503.507 kb on + strandat 503.507 kb on + strandat 503.508 kb on - strandat 503.508 kb on - strandat 503.539 kb on + strandat 503.540 kb on - strandat 503.588 kb on + strandat 503.588 kb on + strandat 503.589 kb on - strandat 503.790 kb on - strand, within LRK53_RS02130at 503.866 kb on + strand, within LRK53_RS02135at 503.867 kb on - strand, within LRK53_RS02135at 503.944 kb on + strand, within LRK53_RS02135at 503.944 kb on + strand, within LRK53_RS02135at 503.944 kb on + strand, within LRK53_RS02135at 503.944 kb on + strand, within LRK53_RS02135at 504.103 kb on + strandat 504.103 kb on + strandat 504.103 kb on + strandat 504.104 kb on - strandat 504.104 kb on - strandat 504.104 kb on - strandat 504.104 kb on - strandat 504.104 kb on - strandat 504.338 kb on + strand, within LRK53_RS02140at 504.338 kb on + strand, within LRK53_RS02140at 504.338 kb on + strand, within LRK53_RS02140at 504.338 kb on + strand, within LRK53_RS02140at 504.339 kb on - strand, within LRK53_RS02140at 504.339 kb on - strand, within LRK53_RS02140at 504.339 kb on - strand, within LRK53_RS02140at 504.339 kb on - strand, within LRK53_RS02140at 504.357 kb on - strand, within LRK53_RS02140at 504.444 kb on + strand, within LRK53_RS02140at 504.444 kb on + strand, within LRK53_RS02140at 504.444 kb on + strand, within LRK53_RS02140at 504.444 kb on + strand, within LRK53_RS02140at 504.445 kb on - strand, within LRK53_RS02140at 504.445 kb on - strand, within LRK53_RS02140at 504.456 kb on + strand, within LRK53_RS02140at 504.471 kb on + strand, within LRK53_RS02140at 504.472 kb on - strand, within LRK53_RS02140at 504.559 kb on + strandat 504.560 kb on - strandat 504.560 kb on - strandat 504.560 kb on - strandat 504.691 kb on + strand, within LRK53_RS02145at 504.737 kb on + strand, within LRK53_RS02145at 504.737 kb on + strand, within LRK53_RS02145at 504.737 kb on + strand, within LRK53_RS02145at 504.738 kb on - strand, within LRK53_RS02145at 504.738 kb on - strand, within LRK53_RS02145at 504.738 kb on - strand, within LRK53_RS02145at 504.808 kb on + strand, within LRK53_RS02145at 504.808 kb on + strand, within LRK53_RS02145at 504.808 kb on + strand, within LRK53_RS02145at 504.809 kb on - strand, within LRK53_RS02145at 504.809 kb on - strand, within LRK53_RS02145at 504.813 kb on + strand, within LRK53_RS02145at 504.813 kb on + strand, within LRK53_RS02145at 504.813 kb on + strand, within LRK53_RS02145at 504.813 kb on + strand, within LRK53_RS02145at 504.814 kb on - strand, within LRK53_RS02145at 504.814 kb on - strand, within LRK53_RS02145at 504.847 kb on - strandat 504.885 kb on + strandat 504.885 kb on + strandat 504.885 kb on + strandat 504.885 kb on + strandat 504.885 kb on + strandat 504.885 kb on + strandat 504.885 kb on + strandat 504.885 kb on + strandat 504.886 kb on - strandat 504.886 kb on - strandat 504.886 kb on - strandat 504.886 kb on - strandat 504.886 kb on - strandat 504.907 kb on + strandat 504.907 kb on + strandat 504.907 kb on + strandat 504.908 kb on - strandat 504.908 kb on - strandat 504.908 kb on - strandat 504.908 kb on - strandat 504.908 kb on - strandat 504.964 kb on - strandat 505.041 kb on + strandat 505.041 kb on + strandat 505.041 kb on + strandat 505.051 kb on + strandat 505.052 kb on - strandat 505.107 kb on + strandat 505.107 kb on + strandat 505.107 kb on + strandat 505.108 kb on - strandat 505.111 kb on + strandat 505.112 kb on - strandat 505.112 kb on - strandat 505.152 kb on + strandat 505.152 kb on + strandat 505.152 kb on + strandat 505.152 kb on + strandat 505.152 kb on + strandat 505.152 kb on + strandat 505.153 kb on - strandat 505.153 kb on - strandat 505.153 kb on - strandat 505.153 kb on - strandat 505.153 kb on - strandat 505.153 kb on - strandat 505.153 kb on - strandat 505.188 kb on + strandat 505.188 kb on + strandat 505.189 kb on - strandat 505.189 kb on - strandat 505.189 kb on - strandat 505.189 kb on - strandat 505.210 kb on + strandat 505.210 kb on + strandat 505.210 kb on + strandat 505.210 kb on + strandat 505.210 kb on + strandat 505.211 kb on - strandat 505.230 kb on + strandat 505.230 kb on + strandat 505.230 kb on + strandat 505.230 kb on + strandat 505.230 kb on + strandat 505.230 kb on + strandat 505.230 kb on + strandat 505.230 kb on + strandat 505.230 kb on + strandat 505.230 kb on + strandat 505.230 kb on + strandat 505.230 kb on + strandat 505.230 kb on + strandat 505.230 kb on + strandat 505.230 kb on + strandat 505.230 kb on + strandat 505.230 kb on + strandat 505.230 kb on + strandat 505.230 kb on + strandat 505.230 kb on + strandat 505.230 kb on + strandat 505.230 kb on + strandat 505.230 kb on + strandat 505.230 kb on + strandat 505.231 kb on - strandat 505.231 kb on - strandat 505.231 kb on - strandat 505.231 kb on - strandat 505.231 kb on - strandat 505.231 kb on - strandat 505.231 kb on - strandat 505.231 kb on - strandat 505.231 kb on - strandat 505.231 kb on - strandat 505.231 kb on - strandat 505.231 kb on - strandat 505.231 kb on - strandat 505.232 kb on + strandat 505.232 kb on + strandat 505.232 kb on + strandat 505.232 kb on + strandat 505.232 kb on + strandat 505.232 kb on + strandat 505.232 kb on + strandat 505.232 kb on + strandat 505.232 kb on + strandat 505.232 kb on + strandat 505.232 kb on + strandat 505.232 kb on + strandat 505.232 kb on + strandat 505.232 kb on + strandat 505.232 kb on + strandat 505.232 kb on + strandat 505.232 kb on + strandat 505.232 kb on + strandat 505.232 kb on + strandat 505.232 kb on + strandat 505.232 kb on + strandat 505.232 kb on + strandat 505.233 kb on - strandat 505.233 kb on - strandat 505.233 kb on - strandat 505.233 kb on - strandat 505.233 kb on - strandat 505.233 kb on - strandat 505.233 kb on - strandat 505.244 kb on + strandat 505.244 kb on + strandat 505.244 kb on + strandat 505.281 kb on - strandat 505.285 kb on + strandat 505.285 kb on + strandat 505.285 kb on + strandat 505.285 kb on + strandat 505.286 kb on - strandat 505.286 kb on - strandat 505.288 kb on + strandat 505.288 kb on + strandat 505.288 kb on + strandat 505.288 kb on + strandat 505.288 kb on + strandat 505.289 kb on - strandat 505.289 kb on - strandat 505.289 kb on - strandat 505.289 kb on - strandat 505.289 kb on - strandat 505.289 kb on - strandat 505.289 kb on - strandat 505.289 kb on - strandat 505.391 kb on + strandat 505.480 kb on + strandat 505.480 kb on + strandat 505.480 kb on + strandat 505.480 kb on + strandat 505.480 kb on + strandat 505.480 kb on + strandat 505.480 kb on + strandat 505.480 kb on + strandat 505.480 kb on + strandat 505.480 kb on + strandat 505.480 kb on + strandat 505.480 kb on + strandat 505.480 kb on + strandat 505.480 kb on + strandat 505.480 kb on + strandat 505.480 kb on + strandat 505.481 kb on - strandat 505.481 kb on - strandat 505.481 kb on - strandat 505.481 kb on - strandat 505.481 kb on - strandat 505.481 kb on - strandat 505.481 kb on - strandat 505.481 kb on - strandat 505.481 kb on - strandat 505.481 kb on - strandat 505.481 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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503,202 + LRK53_RS02125 0.70 +0.0
503,203 - LRK53_RS02125 0.70 -1.6
503,203 - LRK53_RS02125 0.70 +0.4
503,203 - LRK53_RS02125 0.70 -0.1
503,277 + LRK53_RS02125 0.75 +2.7
503,278 - LRK53_RS02125 0.75 -0.3
503,278 - LRK53_RS02125 0.75 +0.1
503,278 - LRK53_RS02125 0.75 +1.2
503,278 - LRK53_RS02125 0.75 -0.1
503,278 - LRK53_RS02125 0.75 +0.6
503,278 - LRK53_RS02125 0.75 -1.7
503,295 - LRK53_RS02125 0.76 -0.5
503,386 + LRK53_RS02125 0.82 -0.3
503,414 + LRK53_RS02125 0.84 -0.5
503,414 + LRK53_RS02125 0.84 -0.3
503,414 + LRK53_RS02125 0.84 +0.4
503,414 + LRK53_RS02125 0.84 -0.0
503,429 - LRK53_RS02125 0.85 +0.9
503,429 - LRK53_RS02125 0.85 -0.6
503,429 - LRK53_RS02125 0.85 -0.5
503,470 + LRK53_RS02125 0.88 +0.3
503,470 + LRK53_RS02125 0.88 +1.1
503,470 + LRK53_RS02125 0.88 -0.6
503,503 + -0.8
503,503 + +1.1
503,503 + -0.1
503,503 + -0.5
503,503 + +0.3
503,503 + -0.1
503,503 + +0.3
503,503 + +0.1
503,503 + -1.8
503,503 + +0.8
503,503 + -0.3
503,503 + +0.3
503,503 + +0.3
503,503 + +0.1
503,503 + -1.9
503,503 + +0.8
503,503 + -2.3
503,503 + -2.2
503,504 - +0.4
503,504 - +0.9
503,504 - -0.6
503,504 - -3.0
503,504 - -0.1
503,504 - +0.2
503,504 - +0.2
503,504 - -0.9
503,504 - +0.8
503,504 - -0.6
503,504 - -0.3
503,504 - +0.7
503,504 - +0.4
503,504 - -0.5
503,504 - -1.4
503,504 - -0.2
503,504 - +0.4
503,504 - +0.8
503,507 + -1.5
503,507 + +0.2
503,507 + +0.8
503,507 + -0.3
503,508 - +1.7
503,508 - +0.2
503,539 + +0.3
503,540 - -1.4
503,588 + -0.3
503,588 + -1.4
503,589 - +0.3
503,790 - LRK53_RS02130 0.81 -1.1
503,866 + LRK53_RS02135 0.16 -0.8
503,867 - LRK53_RS02135 0.16 +0.5
503,944 + LRK53_RS02135 0.43 -1.1
503,944 + LRK53_RS02135 0.43 -0.8
503,944 + LRK53_RS02135 0.43 -1.9
503,944 + LRK53_RS02135 0.43 -0.1
504,103 + +2.1
504,103 + -0.1
504,103 + -1.1
504,104 - -0.6
504,104 - -2.0
504,104 - +1.6
504,104 - -2.1
504,104 - -1.0
504,338 + LRK53_RS02140 0.54 -1.1
504,338 + LRK53_RS02140 0.54 -1.8
504,338 + LRK53_RS02140 0.54 +1.1
504,338 + LRK53_RS02140 0.54 -0.1
504,339 - LRK53_RS02140 0.54 -0.8
504,339 - LRK53_RS02140 0.54 -2.7
504,339 - LRK53_RS02140 0.54 -0.9
504,339 - LRK53_RS02140 0.54 -0.2
504,357 - LRK53_RS02140 0.59 -2.5
504,444 + LRK53_RS02140 0.80 -1.0
504,444 + LRK53_RS02140 0.80 +1.0
504,444 + LRK53_RS02140 0.80 -3.4
504,444 + LRK53_RS02140 0.80 -1.2
504,445 - LRK53_RS02140 0.80 -0.5
504,445 - LRK53_RS02140 0.80 -0.7
504,456 + LRK53_RS02140 0.82 -1.3
504,471 + LRK53_RS02140 0.86 -1.0
504,472 - LRK53_RS02140 0.86 -0.3
504,559 + -1.2
504,560 - +1.8
504,560 - -1.0
504,560 - -1.0
504,691 + LRK53_RS02145 0.47 -2.2
504,737 + LRK53_RS02145 0.61 +0.2
504,737 + LRK53_RS02145 0.61 -3.0
504,737 + LRK53_RS02145 0.61 -0.4
504,738 - LRK53_RS02145 0.61 +0.2
504,738 - LRK53_RS02145 0.61 +1.2
504,738 - LRK53_RS02145 0.61 -1.6
504,808 + LRK53_RS02145 0.82 +0.3
504,808 + LRK53_RS02145 0.82 -0.5
504,808 + LRK53_RS02145 0.82 +0.1
504,809 - LRK53_RS02145 0.83 -0.9
504,809 - LRK53_RS02145 0.83 +1.6
504,813 + LRK53_RS02145 0.84 +0.9
504,813 + LRK53_RS02145 0.84 +0.9
504,813 + LRK53_RS02145 0.84 +0.4
504,813 + LRK53_RS02145 0.84 +0.5
504,814 - LRK53_RS02145 0.84 -0.9
504,814 - LRK53_RS02145 0.84 -0.8
504,847 - -0.3
504,885 + -0.8
504,885 + -1.2
504,885 + +0.0
504,885 + -2.1
504,885 + -2.9
504,885 + +3.7
504,885 + +0.5
504,885 + -1.4
504,886 - -0.5
504,886 - +1.3
504,886 - +0.4
504,886 - -0.6
504,886 - -0.2
504,907 + -1.2
504,907 + -0.3
504,907 + +1.1
504,908 - +0.4
504,908 - -0.3
504,908 - -0.9
504,908 - -0.8
504,908 - +1.8
504,964 - +0.5
505,041 + +0.1
505,041 + +0.2
505,041 + +0.4
505,051 + +1.1
505,052 - -0.8
505,107 + -0.0
505,107 + +1.6
505,107 + -0.7
505,108 - -2.2
505,111 + -0.9
505,112 - -0.5
505,112 - +0.8
505,152 + -0.1
505,152 + +1.5
505,152 + -1.4
505,152 + +0.1
505,152 + -1.0
505,152 + +1.0
505,153 - +0.5
505,153 - -0.2
505,153 - +0.4
505,153 - -1.2
505,153 - +2.1
505,153 - -0.8
505,153 - -0.3
505,188 + -1.2
505,188 + -1.6
505,189 - -1.7
505,189 - +0.5
505,189 - +0.5
505,189 - -2.3
505,210 + +0.5
505,210 + -0.4
505,210 + -2.3
505,210 + +0.7
505,210 + +0.4
505,211 - -0.4
505,230 + -0.7
505,230 + +0.9
505,230 + -1.0
505,230 + +2.6
505,230 + -0.6
505,230 + -0.9
505,230 + -0.4
505,230 + -0.1
505,230 + +0.2
505,230 + -0.7
505,230 + -1.6
505,230 + +0.7
505,230 + -3.4
505,230 + -0.2
505,230 + +0.2
505,230 + +0.2
505,230 + -0.6
505,230 + +3.2
505,230 + -2.6
505,230 + -1.5
505,230 + -2.5
505,230 + -0.8
505,230 + +0.8
505,230 + +2.4
505,231 - -0.1
505,231 - +0.4
505,231 - +1.7
505,231 - -0.9
505,231 - +0.0
505,231 - +0.2
505,231 - +0.0
505,231 - -0.8
505,231 - +0.6
505,231 - -1.0
505,231 - -0.6
505,231 - +0.4
505,231 - -0.9
505,232 + +0.6
505,232 + -2.5
505,232 + -0.5
505,232 + -0.6
505,232 + -0.9
505,232 + +0.9
505,232 + -0.0
505,232 + -0.5
505,232 + +1.8
505,232 + -1.8
505,232 + -0.5
505,232 + -0.9
505,232 + +0.3
505,232 + +0.9
505,232 + +0.6
505,232 + +1.5
505,232 + +0.2
505,232 + +1.1
505,232 + +1.8
505,232 + +0.4
505,232 + -0.8
505,232 + -1.3
505,233 - +0.3
505,233 - +1.5
505,233 - +2.7
505,233 - -2.0
505,233 - -0.1
505,233 - -0.2
505,233 - +2.6
505,244 + +1.0
505,244 + -1.4
505,244 + +0.7
505,281 - -0.2
505,285 + -0.6
505,285 + -1.4
505,285 + +0.3
505,285 + -3.0
505,286 - -0.1
505,286 - +0.1
505,288 + -0.6
505,288 + +0.8
505,288 + +1.6
505,288 + -0.6
505,288 + +0.1
505,289 - +0.4
505,289 - -1.1
505,289 - -0.4
505,289 - +2.3
505,289 - +0.4
505,289 - +0.9
505,289 - -2.4
505,289 - +0.2
505,391 + +0.3
505,480 + -0.8
505,480 + -0.9
505,480 + +1.9
505,480 + +3.0
505,480 + -1.4
505,480 + +0.4
505,480 + +0.7
505,480 + -2.2
505,480 + +1.4
505,480 + -0.0
505,480 + -1.5
505,480 + +0.9
505,480 + +2.2
505,480 + +0.4
505,480 + +1.6
505,480 + -0.3
505,481 - +0.1
505,481 - -0.5
505,481 - +1.1
505,481 - +0.4
505,481 - -0.2
505,481 - -0.1
505,481 - -0.4
505,481 - -0.5
505,481 - +0.4
505,481 - -0.9
505,481 - -0.8

Or see this region's nucleotide sequence