Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS02125 and LRK53_RS02130 overlap by 4 nucleotides LRK53_RS02130 and LRK53_RS02135 overlap by 4 nucleotides LRK53_RS02135 and LRK53_RS02140 are separated by 2 nucleotides LRK53_RS02140 and LRK53_RS02145 are separated by 5 nucleotides LRK53_RS02145 and LRK53_RS02150 are separated by 608 nucleotides
LRK53_RS02125: LRK53_RS02125 - DUF3987 domain-containing protein, at 502,132 to 503,655
_RS02125
LRK53_RS02130: LRK53_RS02130 - hypothetical protein, at 503,652 to 503,822
_RS02130
LRK53_RS02135: LRK53_RS02135 - hypothetical protein, at 503,819 to 504,109
_RS02135
LRK53_RS02140: LRK53_RS02140 - hypothetical protein, at 504,112 to 504,528
_RS02140
LRK53_RS02145: LRK53_RS02145 - hypothetical protein, at 504,534 to 504,866
_RS02145
LRK53_RS02150: LRK53_RS02150 - 6-carboxytetrahydropterin synthase QueD, at 505,475 to 505,837
_RS02150
Position (kb) 504
505 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 503.202 kb on + strand, within LRK53_RS02125 at 503.203 kb on - strand, within LRK53_RS02125 at 503.203 kb on - strand, within LRK53_RS02125 at 503.203 kb on - strand, within LRK53_RS02125 at 503.277 kb on + strand, within LRK53_RS02125 at 503.278 kb on - strand, within LRK53_RS02125 at 503.278 kb on - strand, within LRK53_RS02125 at 503.278 kb on - strand, within LRK53_RS02125 at 503.278 kb on - strand, within LRK53_RS02125 at 503.278 kb on - strand, within LRK53_RS02125 at 503.278 kb on - strand, within LRK53_RS02125 at 503.295 kb on - strand, within LRK53_RS02125 at 503.386 kb on + strand, within LRK53_RS02125 at 503.414 kb on + strand, within LRK53_RS02125 at 503.414 kb on + strand, within LRK53_RS02125 at 503.414 kb on + strand, within LRK53_RS02125 at 503.414 kb on + strand, within LRK53_RS02125 at 503.429 kb on - strand, within LRK53_RS02125 at 503.429 kb on - strand, within LRK53_RS02125 at 503.429 kb on - strand, within LRK53_RS02125 at 503.470 kb on + strand, within LRK53_RS02125 at 503.470 kb on + strand, within LRK53_RS02125 at 503.470 kb on + strand, within LRK53_RS02125 at 503.503 kb on + strand at 503.503 kb on + strand at 503.503 kb on + strand at 503.503 kb on + strand at 503.503 kb on + strand at 503.503 kb on + strand at 503.503 kb on + strand at 503.503 kb on + strand at 503.503 kb on + strand at 503.503 kb on + strand at 503.503 kb on + strand at 503.503 kb on + strand at 503.503 kb on + strand at 503.503 kb on + strand at 503.503 kb on + strand at 503.503 kb on + strand at 503.503 kb on + strand at 503.503 kb on + strand at 503.504 kb on - strand at 503.504 kb on - strand at 503.504 kb on - strand at 503.504 kb on - strand at 503.504 kb on - strand at 503.504 kb on - strand at 503.504 kb on - strand at 503.504 kb on - strand at 503.504 kb on - strand at 503.504 kb on - strand at 503.504 kb on - strand at 503.504 kb on - strand at 503.504 kb on - strand at 503.504 kb on - strand at 503.504 kb on - strand at 503.504 kb on - strand at 503.504 kb on - strand at 503.504 kb on - strand at 503.507 kb on + strand at 503.507 kb on + strand at 503.507 kb on + strand at 503.507 kb on + strand at 503.508 kb on - strand at 503.508 kb on - strand at 503.539 kb on + strand at 503.540 kb on - strand at 503.588 kb on + strand at 503.588 kb on + strand at 503.589 kb on - strand at 503.790 kb on - strand, within LRK53_RS02130 at 503.866 kb on + strand, within LRK53_RS02135 at 503.867 kb on - strand, within LRK53_RS02135 at 503.944 kb on + strand, within LRK53_RS02135 at 503.944 kb on + strand, within LRK53_RS02135 at 503.944 kb on + strand, within LRK53_RS02135 at 503.944 kb on + strand, within LRK53_RS02135 at 504.103 kb on + strand at 504.103 kb on + strand at 504.103 kb on + strand at 504.104 kb on - strand at 504.104 kb on - strand at 504.104 kb on - strand at 504.104 kb on - strand at 504.104 kb on - strand at 504.338 kb on + strand, within LRK53_RS02140 at 504.338 kb on + strand, within LRK53_RS02140 at 504.338 kb on + strand, within LRK53_RS02140 at 504.338 kb on + strand, within LRK53_RS02140 at 504.339 kb on - strand, within LRK53_RS02140 at 504.339 kb on - strand, within LRK53_RS02140 at 504.339 kb on - strand, within LRK53_RS02140 at 504.339 kb on - strand, within LRK53_RS02140 at 504.357 kb on - strand, within LRK53_RS02140 at 504.444 kb on + strand, within LRK53_RS02140 at 504.444 kb on + strand, within LRK53_RS02140 at 504.444 kb on + strand, within LRK53_RS02140 at 504.444 kb on + strand, within LRK53_RS02140 at 504.445 kb on - strand, within LRK53_RS02140 at 504.445 kb on - strand, within LRK53_RS02140 at 504.456 kb on + strand, within LRK53_RS02140 at 504.471 kb on + strand, within LRK53_RS02140 at 504.472 kb on - strand, within LRK53_RS02140 at 504.559 kb on + strand at 504.560 kb on - strand at 504.560 kb on - strand at 504.560 kb on - strand at 504.691 kb on + strand, within LRK53_RS02145 at 504.737 kb on + strand, within LRK53_RS02145 at 504.737 kb on + strand, within LRK53_RS02145 at 504.737 kb on + strand, within LRK53_RS02145 at 504.738 kb on - strand, within LRK53_RS02145 at 504.738 kb on - strand, within LRK53_RS02145 at 504.738 kb on - strand, within LRK53_RS02145 at 504.808 kb on + strand, within LRK53_RS02145 at 504.808 kb on + strand, within LRK53_RS02145 at 504.808 kb on + strand, within LRK53_RS02145 at 504.809 kb on - strand, within LRK53_RS02145 at 504.809 kb on - strand, within LRK53_RS02145 at 504.813 kb on + strand, within LRK53_RS02145 at 504.813 kb on + strand, within LRK53_RS02145 at 504.813 kb on + strand, within LRK53_RS02145 at 504.813 kb on + strand, within LRK53_RS02145 at 504.814 kb on - strand, within LRK53_RS02145 at 504.814 kb on - strand, within LRK53_RS02145 at 504.847 kb on - strand at 504.885 kb on + strand at 504.885 kb on + strand at 504.885 kb on + strand at 504.885 kb on + strand at 504.885 kb on + strand at 504.885 kb on + strand at 504.885 kb on + strand at 504.885 kb on + strand at 504.886 kb on - strand at 504.886 kb on - strand at 504.886 kb on - strand at 504.886 kb on - strand at 504.886 kb on - strand at 504.907 kb on + strand at 504.907 kb on + strand at 504.907 kb on + strand at 504.908 kb on - strand at 504.908 kb on - strand at 504.908 kb on - strand at 504.908 kb on - strand at 504.908 kb on - strand at 504.964 kb on - strand at 505.041 kb on + strand at 505.041 kb on + strand at 505.041 kb on + strand at 505.051 kb on + strand at 505.052 kb on - strand at 505.107 kb on + strand at 505.107 kb on + strand at 505.107 kb on + strand at 505.108 kb on - strand at 505.111 kb on + strand at 505.112 kb on - strand at 505.112 kb on - strand at 505.152 kb on + strand at 505.152 kb on + strand at 505.152 kb on + strand at 505.152 kb on + strand at 505.152 kb on + strand at 505.152 kb on + strand at 505.153 kb on - strand at 505.153 kb on - strand at 505.153 kb on - strand at 505.153 kb on - strand at 505.153 kb on - strand at 505.153 kb on - strand at 505.153 kb on - strand at 505.188 kb on + strand at 505.188 kb on + strand at 505.189 kb on - strand at 505.189 kb on - strand at 505.189 kb on - strand at 505.189 kb on - strand at 505.210 kb on + strand at 505.210 kb on + strand at 505.210 kb on + strand at 505.210 kb on + strand at 505.210 kb on + strand at 505.211 kb on - strand at 505.230 kb on + strand at 505.230 kb on + strand at 505.230 kb on + strand at 505.230 kb on + strand at 505.230 kb on + strand at 505.230 kb on + strand at 505.230 kb on + strand at 505.230 kb on + strand at 505.230 kb on + strand at 505.230 kb on + strand at 505.230 kb on + strand at 505.230 kb on + strand at 505.230 kb on + strand at 505.230 kb on + strand at 505.230 kb on + strand at 505.230 kb on + strand at 505.230 kb on + strand at 505.230 kb on + strand at 505.230 kb on + strand at 505.230 kb on + strand at 505.230 kb on + strand at 505.230 kb on + strand at 505.230 kb on + strand at 505.230 kb on + strand at 505.231 kb on - strand at 505.231 kb on - strand at 505.231 kb on - strand at 505.231 kb on - strand at 505.231 kb on - strand at 505.231 kb on - strand at 505.231 kb on - strand at 505.231 kb on - strand at 505.231 kb on - strand at 505.231 kb on - strand at 505.231 kb on - strand at 505.231 kb on - strand at 505.231 kb on - strand at 505.232 kb on + strand at 505.232 kb on + strand at 505.232 kb on + strand at 505.232 kb on + strand at 505.232 kb on + strand at 505.232 kb on + strand at 505.232 kb on + strand at 505.232 kb on + strand at 505.232 kb on + strand at 505.232 kb on + strand at 505.232 kb on + strand at 505.232 kb on + strand at 505.232 kb on + strand at 505.232 kb on + strand at 505.232 kb on + strand at 505.232 kb on + strand at 505.232 kb on + strand at 505.232 kb on + strand at 505.232 kb on + strand at 505.232 kb on + strand at 505.232 kb on + strand at 505.232 kb on + strand at 505.233 kb on - strand at 505.233 kb on - strand at 505.233 kb on - strand at 505.233 kb on - strand at 505.233 kb on - strand at 505.233 kb on - strand at 505.233 kb on - strand at 505.244 kb on + strand at 505.244 kb on + strand at 505.244 kb on + strand at 505.281 kb on - strand at 505.285 kb on + strand at 505.285 kb on + strand at 505.285 kb on + strand at 505.285 kb on + strand at 505.286 kb on - strand at 505.286 kb on - strand at 505.288 kb on + strand at 505.288 kb on + strand at 505.288 kb on + strand at 505.288 kb on + strand at 505.288 kb on + strand at 505.289 kb on - strand at 505.289 kb on - strand at 505.289 kb on - strand at 505.289 kb on - strand at 505.289 kb on - strand at 505.289 kb on - strand at 505.289 kb on - strand at 505.289 kb on - strand at 505.391 kb on + strand at 505.480 kb on + strand at 505.480 kb on + strand at 505.480 kb on + strand at 505.480 kb on + strand at 505.480 kb on + strand at 505.480 kb on + strand at 505.480 kb on + strand at 505.480 kb on + strand at 505.480 kb on + strand at 505.480 kb on + strand at 505.480 kb on + strand at 505.480 kb on + strand at 505.480 kb on + strand at 505.480 kb on + strand at 505.480 kb on + strand at 505.480 kb on + strand at 505.481 kb on - strand at 505.481 kb on - strand at 505.481 kb on - strand at 505.481 kb on - strand at 505.481 kb on - strand at 505.481 kb on - strand at 505.481 kb on - strand at 505.481 kb on - strand at 505.481 kb on - strand at 505.481 kb on - strand at 505.481 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 503,202 + LRK53_RS02125 0.70 +0.0 503,203 - LRK53_RS02125 0.70 -1.6 503,203 - LRK53_RS02125 0.70 +0.4 503,203 - LRK53_RS02125 0.70 -0.1 503,277 + LRK53_RS02125 0.75 +2.7 503,278 - LRK53_RS02125 0.75 -0.3 503,278 - LRK53_RS02125 0.75 +0.1 503,278 - LRK53_RS02125 0.75 +1.2 503,278 - LRK53_RS02125 0.75 -0.1 503,278 - LRK53_RS02125 0.75 +0.6 503,278 - LRK53_RS02125 0.75 -1.7 503,295 - LRK53_RS02125 0.76 -0.5 503,386 + LRK53_RS02125 0.82 -0.3 503,414 + LRK53_RS02125 0.84 -0.5 503,414 + LRK53_RS02125 0.84 -0.3 503,414 + LRK53_RS02125 0.84 +0.4 503,414 + LRK53_RS02125 0.84 -0.0 503,429 - LRK53_RS02125 0.85 +0.9 503,429 - LRK53_RS02125 0.85 -0.6 503,429 - LRK53_RS02125 0.85 -0.5 503,470 + LRK53_RS02125 0.88 +0.3 503,470 + LRK53_RS02125 0.88 +1.1 503,470 + LRK53_RS02125 0.88 -0.6 503,503 + -0.8 503,503 + +1.1 503,503 + -0.1 503,503 + -0.5 503,503 + +0.3 503,503 + -0.1 503,503 + +0.3 503,503 + +0.1 503,503 + -1.8 503,503 + +0.8 503,503 + -0.3 503,503 + +0.3 503,503 + +0.3 503,503 + +0.1 503,503 + -1.9 503,503 + +0.8 503,503 + -2.3 503,503 + -2.2 503,504 - +0.4 503,504 - +0.9 503,504 - -0.6 503,504 - -3.0 503,504 - -0.1 503,504 - +0.2 503,504 - +0.2 503,504 - -0.9 503,504 - +0.8 503,504 - -0.6 503,504 - -0.3 503,504 - +0.7 503,504 - +0.4 503,504 - -0.5 503,504 - -1.4 503,504 - -0.2 503,504 - +0.4 503,504 - +0.8 503,507 + -1.5 503,507 + +0.2 503,507 + +0.8 503,507 + -0.3 503,508 - +1.7 503,508 - +0.2 503,539 + +0.3 503,540 - -1.4 503,588 + -0.3 503,588 + -1.4 503,589 - +0.3 503,790 - LRK53_RS02130 0.81 -1.1 503,866 + LRK53_RS02135 0.16 -0.8 503,867 - LRK53_RS02135 0.16 +0.5 503,944 + LRK53_RS02135 0.43 -1.1 503,944 + LRK53_RS02135 0.43 -0.8 503,944 + LRK53_RS02135 0.43 -1.9 503,944 + LRK53_RS02135 0.43 -0.1 504,103 + +2.1 504,103 + -0.1 504,103 + -1.1 504,104 - -0.6 504,104 - -2.0 504,104 - +1.6 504,104 - -2.1 504,104 - -1.0 504,338 + LRK53_RS02140 0.54 -1.1 504,338 + LRK53_RS02140 0.54 -1.8 504,338 + LRK53_RS02140 0.54 +1.1 504,338 + LRK53_RS02140 0.54 -0.1 504,339 - LRK53_RS02140 0.54 -0.8 504,339 - LRK53_RS02140 0.54 -2.7 504,339 - LRK53_RS02140 0.54 -0.9 504,339 - LRK53_RS02140 0.54 -0.2 504,357 - LRK53_RS02140 0.59 -2.5 504,444 + LRK53_RS02140 0.80 -1.0 504,444 + LRK53_RS02140 0.80 +1.0 504,444 + LRK53_RS02140 0.80 -3.4 504,444 + LRK53_RS02140 0.80 -1.2 504,445 - LRK53_RS02140 0.80 -0.5 504,445 - LRK53_RS02140 0.80 -0.7 504,456 + LRK53_RS02140 0.82 -1.3 504,471 + LRK53_RS02140 0.86 -1.0 504,472 - LRK53_RS02140 0.86 -0.3 504,559 + -1.2 504,560 - +1.8 504,560 - -1.0 504,560 - -1.0 504,691 + LRK53_RS02145 0.47 -2.2 504,737 + LRK53_RS02145 0.61 +0.2 504,737 + LRK53_RS02145 0.61 -3.0 504,737 + LRK53_RS02145 0.61 -0.4 504,738 - LRK53_RS02145 0.61 +0.2 504,738 - LRK53_RS02145 0.61 +1.2 504,738 - LRK53_RS02145 0.61 -1.6 504,808 + LRK53_RS02145 0.82 +0.3 504,808 + LRK53_RS02145 0.82 -0.5 504,808 + LRK53_RS02145 0.82 +0.1 504,809 - LRK53_RS02145 0.83 -0.9 504,809 - LRK53_RS02145 0.83 +1.6 504,813 + LRK53_RS02145 0.84 +0.9 504,813 + LRK53_RS02145 0.84 +0.9 504,813 + LRK53_RS02145 0.84 +0.4 504,813 + LRK53_RS02145 0.84 +0.5 504,814 - LRK53_RS02145 0.84 -0.9 504,814 - LRK53_RS02145 0.84 -0.8 504,847 - -0.3 504,885 + -0.8 504,885 + -1.2 504,885 + +0.0 504,885 + -2.1 504,885 + -2.9 504,885 + +3.7 504,885 + +0.5 504,885 + -1.4 504,886 - -0.5 504,886 - +1.3 504,886 - +0.4 504,886 - -0.6 504,886 - -0.2 504,907 + -1.2 504,907 + -0.3 504,907 + +1.1 504,908 - +0.4 504,908 - -0.3 504,908 - -0.9 504,908 - -0.8 504,908 - +1.8 504,964 - +0.5 505,041 + +0.1 505,041 + +0.2 505,041 + +0.4 505,051 + +1.1 505,052 - -0.8 505,107 + -0.0 505,107 + +1.6 505,107 + -0.7 505,108 - -2.2 505,111 + -0.9 505,112 - -0.5 505,112 - +0.8 505,152 + -0.1 505,152 + +1.5 505,152 + -1.4 505,152 + +0.1 505,152 + -1.0 505,152 + +1.0 505,153 - +0.5 505,153 - -0.2 505,153 - +0.4 505,153 - -1.2 505,153 - +2.1 505,153 - -0.8 505,153 - -0.3 505,188 + -1.2 505,188 + -1.6 505,189 - -1.7 505,189 - +0.5 505,189 - +0.5 505,189 - -2.3 505,210 + +0.5 505,210 + -0.4 505,210 + -2.3 505,210 + +0.7 505,210 + +0.4 505,211 - -0.4 505,230 + -0.7 505,230 + +0.9 505,230 + -1.0 505,230 + +2.6 505,230 + -0.6 505,230 + -0.9 505,230 + -0.4 505,230 + -0.1 505,230 + +0.2 505,230 + -0.7 505,230 + -1.6 505,230 + +0.7 505,230 + -3.4 505,230 + -0.2 505,230 + +0.2 505,230 + +0.2 505,230 + -0.6 505,230 + +3.2 505,230 + -2.6 505,230 + -1.5 505,230 + -2.5 505,230 + -0.8 505,230 + +0.8 505,230 + +2.4 505,231 - -0.1 505,231 - +0.4 505,231 - +1.7 505,231 - -0.9 505,231 - +0.0 505,231 - +0.2 505,231 - +0.0 505,231 - -0.8 505,231 - +0.6 505,231 - -1.0 505,231 - -0.6 505,231 - +0.4 505,231 - -0.9 505,232 + +0.6 505,232 + -2.5 505,232 + -0.5 505,232 + -0.6 505,232 + -0.9 505,232 + +0.9 505,232 + -0.0 505,232 + -0.5 505,232 + +1.8 505,232 + -1.8 505,232 + -0.5 505,232 + -0.9 505,232 + +0.3 505,232 + +0.9 505,232 + +0.6 505,232 + +1.5 505,232 + +0.2 505,232 + +1.1 505,232 + +1.8 505,232 + +0.4 505,232 + -0.8 505,232 + -1.3 505,233 - +0.3 505,233 - +1.5 505,233 - +2.7 505,233 - -2.0 505,233 - -0.1 505,233 - -0.2 505,233 - +2.6 505,244 + +1.0 505,244 + -1.4 505,244 + +0.7 505,281 - -0.2 505,285 + -0.6 505,285 + -1.4 505,285 + +0.3 505,285 + -3.0 505,286 - -0.1 505,286 - +0.1 505,288 + -0.6 505,288 + +0.8 505,288 + +1.6 505,288 + -0.6 505,288 + +0.1 505,289 - +0.4 505,289 - -1.1 505,289 - -0.4 505,289 - +2.3 505,289 - +0.4 505,289 - +0.9 505,289 - -2.4 505,289 - +0.2 505,391 + +0.3 505,480 + -0.8 505,480 + -0.9 505,480 + +1.9 505,480 + +3.0 505,480 + -1.4 505,480 + +0.4 505,480 + +0.7 505,480 + -2.2 505,480 + +1.4 505,480 + -0.0 505,480 + -1.5 505,480 + +0.9 505,480 + +2.2 505,480 + +0.4 505,480 + +1.6 505,480 + -0.3 505,481 - +0.1 505,481 - -0.5 505,481 - +1.1 505,481 - +0.4 505,481 - -0.2 505,481 - -0.1 505,481 - -0.4 505,481 - -0.5 505,481 - +0.4 505,481 - -0.9 505,481 - -0.8
Or see this region's nucleotide sequence