Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS02065 and LRK53_RS02070 overlap by 4 nucleotides LRK53_RS02070 and LRK53_RS02075 are separated by 40 nucleotides LRK53_RS02075 and LRK53_RS02080 are separated by 57 nucleotides LRK53_RS02080 and LRK53_RS02085 are separated by 124 nucleotides LRK53_RS02085 and LRK53_RS02090 are separated by 82 nucleotides
LRK53_RS02065: LRK53_RS02065 - hypothetical protein, at 491,602 to 492,309
_RS02065
LRK53_RS02070: LRK53_RS02070 - hypothetical protein, at 492,306 to 492,854
_RS02070
LRK53_RS02075: LRK53_RS02075 - hypothetical protein, at 492,895 to 493,182
_RS02075
LRK53_RS02080: LRK53_RS02080 - hypothetical protein, at 493,240 to 493,554
_RS02080
LRK53_RS02085: LRK53_RS02085 - hypothetical protein, at 493,679 to 494,017
_RS02085
LRK53_RS02090: LRK53_RS02090 - DUF932 domain-containing protein, at 494,100 to 495,056
_RS02090
Position (kb) 492
493
494 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 491.969 kb on - strand, within LRK53_RS02065 at 491.969 kb on - strand, within LRK53_RS02065 at 491.969 kb on - strand, within LRK53_RS02065 at 492.102 kb on + strand, within LRK53_RS02065 at 492.102 kb on + strand, within LRK53_RS02065 at 492.102 kb on + strand, within LRK53_RS02065 at 492.103 kb on - strand, within LRK53_RS02065 at 492.229 kb on + strand, within LRK53_RS02065 at 492.229 kb on + strand, within LRK53_RS02065 at 492.230 kb on - strand, within LRK53_RS02065 at 492.230 kb on - strand, within LRK53_RS02065 at 492.281 kb on + strand at 492.290 kb on + strand at 492.290 kb on + strand at 492.305 kb on + strand at 492.305 kb on + strand at 492.305 kb on + strand at 492.305 kb on + strand at 492.305 kb on + strand at 492.305 kb on + strand at 492.305 kb on + strand at 492.306 kb on - strand at 492.306 kb on - strand at 492.306 kb on - strand at 492.306 kb on - strand at 492.306 kb on - strand at 492.306 kb on - strand at 492.457 kb on + strand, within LRK53_RS02070 at 492.457 kb on + strand, within LRK53_RS02070 at 492.458 kb on - strand, within LRK53_RS02070 at 492.472 kb on + strand, within LRK53_RS02070 at 492.473 kb on - strand, within LRK53_RS02070 at 492.492 kb on + strand, within LRK53_RS02070 at 492.516 kb on + strand, within LRK53_RS02070 at 492.578 kb on + strand, within LRK53_RS02070 at 492.578 kb on + strand, within LRK53_RS02070 at 492.590 kb on + strand, within LRK53_RS02070 at 492.591 kb on - strand, within LRK53_RS02070 at 492.593 kb on + strand, within LRK53_RS02070 at 492.604 kb on + strand, within LRK53_RS02070 at 492.789 kb on + strand, within LRK53_RS02070 at 492.789 kb on + strand, within LRK53_RS02070 at 492.789 kb on + strand, within LRK53_RS02070 at 492.789 kb on + strand, within LRK53_RS02070 at 492.789 kb on + strand, within LRK53_RS02070 at 492.789 kb on + strand, within LRK53_RS02070 at 492.790 kb on - strand, within LRK53_RS02070 at 492.790 kb on - strand, within LRK53_RS02070 at 492.790 kb on - strand, within LRK53_RS02070 at 492.790 kb on - strand, within LRK53_RS02070 at 492.866 kb on + strand at 492.866 kb on + strand at 492.867 kb on - strand at 492.894 kb on + strand at 492.894 kb on + strand at 492.894 kb on + strand at 492.894 kb on + strand at 492.894 kb on + strand at 492.894 kb on + strand at 492.894 kb on + strand at 492.894 kb on + strand at 492.894 kb on + strand at 492.895 kb on - strand at 492.895 kb on - strand at 492.895 kb on - strand at 492.895 kb on - strand at 492.895 kb on - strand at 492.895 kb on - strand at 492.895 kb on - strand at 492.895 kb on - strand at 492.895 kb on - strand at 492.895 kb on - strand at 493.071 kb on + strand, within LRK53_RS02075 at 493.071 kb on + strand, within LRK53_RS02075 at 493.072 kb on - strand, within LRK53_RS02075 at 493.072 kb on - strand, within LRK53_RS02075 at 493.075 kb on + strand, within LRK53_RS02075 at 493.075 kb on + strand, within LRK53_RS02075 at 493.075 kb on + strand, within LRK53_RS02075 at 493.075 kb on + strand, within LRK53_RS02075 at 493.075 kb on + strand, within LRK53_RS02075 at 493.075 kb on + strand, within LRK53_RS02075 at 493.075 kb on + strand, within LRK53_RS02075 at 493.075 kb on + strand, within LRK53_RS02075 at 493.075 kb on + strand, within LRK53_RS02075 at 493.076 kb on - strand, within LRK53_RS02075 at 493.076 kb on - strand, within LRK53_RS02075 at 493.076 kb on - strand, within LRK53_RS02075 at 493.076 kb on - strand, within LRK53_RS02075 at 493.076 kb on - strand, within LRK53_RS02075 at 493.076 kb on - strand, within LRK53_RS02075 at 493.180 kb on + strand at 493.181 kb on - strand at 493.181 kb on - strand at 493.181 kb on - strand at 493.212 kb on + strand at 493.213 kb on - strand at 493.213 kb on - strand at 493.213 kb on - strand at 493.231 kb on + strand at 493.231 kb on + strand at 493.231 kb on + strand at 493.232 kb on - strand at 493.232 kb on - strand at 493.232 kb on - strand at 493.232 kb on - strand at 493.303 kb on + strand, within LRK53_RS02080 at 493.303 kb on + strand, within LRK53_RS02080 at 493.303 kb on + strand, within LRK53_RS02080 at 493.303 kb on + strand, within LRK53_RS02080 at 493.303 kb on + strand, within LRK53_RS02080 at 493.304 kb on - strand, within LRK53_RS02080 at 493.304 kb on - strand, within LRK53_RS02080 at 493.304 kb on - strand, within LRK53_RS02080 at 493.307 kb on + strand, within LRK53_RS02080 at 493.307 kb on + strand, within LRK53_RS02080 at 493.307 kb on + strand, within LRK53_RS02080 at 493.307 kb on + strand, within LRK53_RS02080 at 493.307 kb on + strand, within LRK53_RS02080 at 493.307 kb on + strand, within LRK53_RS02080 at 493.307 kb on + strand, within LRK53_RS02080 at 493.307 kb on + strand, within LRK53_RS02080 at 493.308 kb on - strand, within LRK53_RS02080 at 493.308 kb on - strand, within LRK53_RS02080 at 493.308 kb on - strand, within LRK53_RS02080 at 493.308 kb on - strand, within LRK53_RS02080 at 493.308 kb on - strand, within LRK53_RS02080 at 493.308 kb on - strand, within LRK53_RS02080 at 493.308 kb on - strand, within LRK53_RS02080 at 493.308 kb on - strand, within LRK53_RS02080 at 493.308 kb on - strand, within LRK53_RS02080 at 493.355 kb on - strand, within LRK53_RS02080 at 493.382 kb on - strand, within LRK53_RS02080 at 493.404 kb on + strand, within LRK53_RS02080 at 493.405 kb on - strand, within LRK53_RS02080 at 493.450 kb on + strand, within LRK53_RS02080 at 493.451 kb on - strand, within LRK53_RS02080 at 493.451 kb on - strand, within LRK53_RS02080 at 493.462 kb on + strand, within LRK53_RS02080 at 493.462 kb on + strand, within LRK53_RS02080 at 493.463 kb on - strand, within LRK53_RS02080 at 493.463 kb on - strand, within LRK53_RS02080 at 493.463 kb on - strand, within LRK53_RS02080 at 493.463 kb on - strand, within LRK53_RS02080 at 493.572 kb on - strand at 493.608 kb on + strand at 493.609 kb on - strand at 493.645 kb on + strand at 493.645 kb on + strand at 493.645 kb on + strand at 493.646 kb on - strand at 493.728 kb on + strand, within LRK53_RS02085 at 493.729 kb on - strand, within LRK53_RS02085 at 493.828 kb on + strand, within LRK53_RS02085 at 493.828 kb on + strand, within LRK53_RS02085 at 493.828 kb on + strand, within LRK53_RS02085 at 493.828 kb on + strand, within LRK53_RS02085 at 493.828 kb on + strand, within LRK53_RS02085 at 493.828 kb on + strand, within LRK53_RS02085 at 493.828 kb on + strand, within LRK53_RS02085 at 493.828 kb on + strand, within LRK53_RS02085 at 493.828 kb on + strand, within LRK53_RS02085 at 493.828 kb on + strand, within LRK53_RS02085 at 493.829 kb on - strand, within LRK53_RS02085 at 493.829 kb on - strand, within LRK53_RS02085 at 493.829 kb on - strand, within LRK53_RS02085 at 493.829 kb on - strand, within LRK53_RS02085 at 493.829 kb on - strand, within LRK53_RS02085 at 493.829 kb on - strand, within LRK53_RS02085 at 493.829 kb on - strand, within LRK53_RS02085 at 493.829 kb on - strand, within LRK53_RS02085 at 493.829 kb on - strand, within LRK53_RS02085 at 493.829 kb on - strand, within LRK53_RS02085 at 493.829 kb on - strand, within LRK53_RS02085 at 493.829 kb on - strand, within LRK53_RS02085 at 493.829 kb on - strand, within LRK53_RS02085 at 493.829 kb on - strand, within LRK53_RS02085 at 493.829 kb on - strand, within LRK53_RS02085 at 493.829 kb on - strand, within LRK53_RS02085 at 493.874 kb on - strand, within LRK53_RS02085 at 494.032 kb on - strand at 494.074 kb on - strand at 494.124 kb on + strand at 494.124 kb on + strand at 494.124 kb on + strand at 494.124 kb on + strand at 494.124 kb on + strand at 494.124 kb on + strand at 494.125 kb on - strand at 494.125 kb on - strand at 494.125 kb on - strand at 494.164 kb on + strand at 494.164 kb on + strand at 494.164 kb on + strand at 494.164 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 491,969 - LRK53_RS02065 0.52 +2.2 491,969 - LRK53_RS02065 0.52 -0.3 491,969 - LRK53_RS02065 0.52 -1.1 492,102 + LRK53_RS02065 0.71 -0.6 492,102 + LRK53_RS02065 0.71 -2.0 492,102 + LRK53_RS02065 0.71 +0.4 492,103 - LRK53_RS02065 0.71 +0.0 492,229 + LRK53_RS02065 0.89 +0.8 492,229 + LRK53_RS02065 0.89 +0.2 492,230 - LRK53_RS02065 0.89 -0.3 492,230 - LRK53_RS02065 0.89 -0.4 492,281 + +1.0 492,290 + +0.6 492,290 + +0.3 492,305 + +0.4 492,305 + +3.1 492,305 + -1.7 492,305 + +0.2 492,305 + -1.0 492,305 + +1.0 492,305 + -2.8 492,306 - -0.5 492,306 - -0.6 492,306 - +0.5 492,306 - +0.2 492,306 - -1.3 492,306 - +1.4 492,457 + LRK53_RS02070 0.28 +0.8 492,457 + LRK53_RS02070 0.28 +1.2 492,458 - LRK53_RS02070 0.28 +0.0 492,472 + LRK53_RS02070 0.30 +0.8 492,473 - LRK53_RS02070 0.30 +0.3 492,492 + LRK53_RS02070 0.34 +0.5 492,516 + LRK53_RS02070 0.38 -1.6 492,578 + LRK53_RS02070 0.50 -0.6 492,578 + LRK53_RS02070 0.50 -0.0 492,590 + LRK53_RS02070 0.52 -0.3 492,591 - LRK53_RS02070 0.52 -2.5 492,593 + LRK53_RS02070 0.52 +0.8 492,604 + LRK53_RS02070 0.54 +0.4 492,789 + LRK53_RS02070 0.88 +0.0 492,789 + LRK53_RS02070 0.88 +0.1 492,789 + LRK53_RS02070 0.88 +0.1 492,789 + LRK53_RS02070 0.88 -2.1 492,789 + LRK53_RS02070 0.88 -0.1 492,789 + LRK53_RS02070 0.88 +0.1 492,790 - LRK53_RS02070 0.88 -0.1 492,790 - LRK53_RS02070 0.88 -1.8 492,790 - LRK53_RS02070 0.88 -2.2 492,790 - LRK53_RS02070 0.88 +1.1 492,866 + +0.9 492,866 + +1.1 492,867 - -0.5 492,894 + -3.3 492,894 + +1.2 492,894 + -0.1 492,894 + -0.8 492,894 + -1.1 492,894 + +1.0 492,894 + -0.3 492,894 + -1.4 492,894 + -0.3 492,895 - -1.3 492,895 - -1.6 492,895 - +0.6 492,895 - -1.1 492,895 - -0.0 492,895 - -1.5 492,895 - +1.0 492,895 - +0.2 492,895 - -1.8 492,895 - +0.2 493,071 + LRK53_RS02075 0.61 +0.8 493,071 + LRK53_RS02075 0.61 +1.4 493,072 - LRK53_RS02075 0.61 +1.5 493,072 - LRK53_RS02075 0.61 -2.6 493,075 + LRK53_RS02075 0.62 +0.3 493,075 + LRK53_RS02075 0.62 -1.8 493,075 + LRK53_RS02075 0.62 +0.9 493,075 + LRK53_RS02075 0.62 -0.6 493,075 + LRK53_RS02075 0.62 +2.5 493,075 + LRK53_RS02075 0.62 +1.0 493,075 + LRK53_RS02075 0.62 -0.2 493,075 + LRK53_RS02075 0.62 -0.8 493,075 + LRK53_RS02075 0.62 +0.0 493,076 - LRK53_RS02075 0.63 +0.1 493,076 - LRK53_RS02075 0.63 -0.6 493,076 - LRK53_RS02075 0.63 -1.9 493,076 - LRK53_RS02075 0.63 -1.1 493,076 - LRK53_RS02075 0.63 -0.2 493,076 - LRK53_RS02075 0.63 -0.9 493,180 + +4.2 493,181 - -0.9 493,181 - +0.8 493,181 - -3.2 493,212 + +1.0 493,213 - -1.6 493,213 - +0.1 493,213 - -0.3 493,231 + -2.5 493,231 + -1.7 493,231 + -0.9 493,232 - -0.1 493,232 - +0.4 493,232 - +1.1 493,232 - +0.4 493,303 + LRK53_RS02080 0.20 -0.6 493,303 + LRK53_RS02080 0.20 -0.2 493,303 + LRK53_RS02080 0.20 -1.7 493,303 + LRK53_RS02080 0.20 +0.4 493,303 + LRK53_RS02080 0.20 -2.8 493,304 - LRK53_RS02080 0.20 +1.1 493,304 - LRK53_RS02080 0.20 -1.7 493,304 - LRK53_RS02080 0.20 +0.2 493,307 + LRK53_RS02080 0.21 -1.8 493,307 + LRK53_RS02080 0.21 -0.2 493,307 + LRK53_RS02080 0.21 -1.1 493,307 + LRK53_RS02080 0.21 -0.7 493,307 + LRK53_RS02080 0.21 -0.2 493,307 + LRK53_RS02080 0.21 -2.3 493,307 + LRK53_RS02080 0.21 +1.1 493,307 + LRK53_RS02080 0.21 +2.5 493,308 - LRK53_RS02080 0.22 +0.5 493,308 - LRK53_RS02080 0.22 -0.8 493,308 - LRK53_RS02080 0.22 -0.8 493,308 - LRK53_RS02080 0.22 +1.0 493,308 - LRK53_RS02080 0.22 -1.9 493,308 - LRK53_RS02080 0.22 -1.4 493,308 - LRK53_RS02080 0.22 +2.0 493,308 - LRK53_RS02080 0.22 +0.1 493,308 - LRK53_RS02080 0.22 -1.4 493,355 - LRK53_RS02080 0.37 -0.1 493,382 - LRK53_RS02080 0.45 +0.3 493,404 + LRK53_RS02080 0.52 -1.4 493,405 - LRK53_RS02080 0.52 -0.2 493,450 + LRK53_RS02080 0.67 -0.8 493,451 - LRK53_RS02080 0.67 -0.4 493,451 - LRK53_RS02080 0.67 +1.9 493,462 + LRK53_RS02080 0.70 +0.1 493,462 + LRK53_RS02080 0.70 -2.1 493,463 - LRK53_RS02080 0.71 -1.5 493,463 - LRK53_RS02080 0.71 +0.8 493,463 - LRK53_RS02080 0.71 -0.6 493,463 - LRK53_RS02080 0.71 -0.5 493,572 - -2.5 493,608 + +0.2 493,609 - +0.1 493,645 + -0.2 493,645 + -1.8 493,645 + +0.3 493,646 - +0.9 493,728 + LRK53_RS02085 0.14 +0.4 493,729 - LRK53_RS02085 0.15 -0.8 493,828 + LRK53_RS02085 0.44 -0.6 493,828 + LRK53_RS02085 0.44 -0.1 493,828 + LRK53_RS02085 0.44 -0.3 493,828 + LRK53_RS02085 0.44 -1.1 493,828 + LRK53_RS02085 0.44 -0.5 493,828 + LRK53_RS02085 0.44 +0.1 493,828 + LRK53_RS02085 0.44 -0.3 493,828 + LRK53_RS02085 0.44 -0.5 493,828 + LRK53_RS02085 0.44 +0.4 493,828 + LRK53_RS02085 0.44 +0.4 493,829 - LRK53_RS02085 0.44 +2.2 493,829 - LRK53_RS02085 0.44 -2.8 493,829 - LRK53_RS02085 0.44 +0.4 493,829 - LRK53_RS02085 0.44 -1.1 493,829 - LRK53_RS02085 0.44 +2.9 493,829 - LRK53_RS02085 0.44 -0.9 493,829 - LRK53_RS02085 0.44 -0.1 493,829 - LRK53_RS02085 0.44 -1.4 493,829 - LRK53_RS02085 0.44 -0.3 493,829 - LRK53_RS02085 0.44 +1.3 493,829 - LRK53_RS02085 0.44 +0.4 493,829 - LRK53_RS02085 0.44 +0.2 493,829 - LRK53_RS02085 0.44 -0.4 493,829 - LRK53_RS02085 0.44 +0.1 493,829 - LRK53_RS02085 0.44 -0.1 493,829 - LRK53_RS02085 0.44 -1.8 493,874 - LRK53_RS02085 0.58 -1.4 494,032 - +0.2 494,074 - +0.4 494,124 + -1.1 494,124 + +0.3 494,124 + -1.4 494,124 + -0.6 494,124 + +2.0 494,124 + -0.7 494,125 - -0.1 494,125 - -0.0 494,125 - +0.4 494,164 + +0.0 494,164 + +0.4 494,164 + -0.2 494,164 + -0.2
Or see this region's nucleotide sequence