Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS01995

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS01990 and LRK53_RS01995 overlap by 4 nucleotidesLRK53_RS01995 and LRK53_RS02000 are separated by 8 nucleotides LRK53_RS01990: LRK53_RS01990 - SAM-dependent DNA methyltransferase, at 461,978 to 466,255 _RS01990 LRK53_RS01995: LRK53_RS01995 - ATP-binding protein, at 466,252 to 468,132 _RS01995 LRK53_RS02000: LRK53_RS02000 - DISARM system helicase DrmA, at 468,141 to 472,166 _RS02000 Position (kb) 466 467 468 469Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 465.326 kb on + strand, within LRK53_RS01990at 465.326 kb on + strand, within LRK53_RS01990at 465.327 kb on - strand, within LRK53_RS01990at 465.355 kb on + strand, within LRK53_RS01990at 465.356 kb on - strand, within LRK53_RS01990at 465.361 kb on - strand, within LRK53_RS01990at 465.361 kb on - strand, within LRK53_RS01990at 465.361 kb on - strand, within LRK53_RS01990at 465.361 kb on - strand, within LRK53_RS01990at 465.361 kb on - strand, within LRK53_RS01990at 465.373 kb on + strand, within LRK53_RS01990at 465.373 kb on + strand, within LRK53_RS01990at 465.373 kb on + strand, within LRK53_RS01990at 465.373 kb on + strand, within LRK53_RS01990at 465.374 kb on - strand, within LRK53_RS01990at 465.375 kb on - strand, within LRK53_RS01990at 465.381 kb on + strand, within LRK53_RS01990at 465.381 kb on + strand, within LRK53_RS01990at 465.382 kb on - strand, within LRK53_RS01990at 465.405 kb on - strand, within LRK53_RS01990at 465.460 kb on - strand, within LRK53_RS01990at 465.466 kb on + strand, within LRK53_RS01990at 465.485 kb on + strand, within LRK53_RS01990at 465.561 kb on - strand, within LRK53_RS01990at 465.580 kb on - strand, within LRK53_RS01990at 465.638 kb on + strand, within LRK53_RS01990at 465.638 kb on + strand, within LRK53_RS01990at 465.719 kb on - strand, within LRK53_RS01990at 465.719 kb on - strand, within LRK53_RS01990at 465.719 kb on - strand, within LRK53_RS01990at 465.851 kb on - strandat 465.870 kb on + strandat 465.871 kb on - strandat 465.889 kb on - strandat 465.936 kb on + strandat 465.936 kb on + strandat 465.936 kb on + strandat 465.936 kb on + strandat 465.936 kb on + strandat 465.936 kb on + strandat 465.936 kb on + strandat 465.937 kb on - strandat 465.937 kb on - strandat 465.937 kb on - strandat 465.937 kb on - strandat 465.940 kb on + strandat 465.940 kb on + strandat 465.940 kb on + strandat 465.940 kb on + strandat 465.941 kb on - strandat 465.941 kb on - strandat 465.941 kb on - strandat 465.941 kb on - strandat 465.941 kb on - strandat 465.941 kb on - strandat 465.941 kb on - strandat 465.941 kb on - strandat 465.941 kb on - strandat 466.042 kb on + strandat 466.042 kb on + strandat 466.042 kb on + strandat 466.043 kb on - strandat 466.043 kb on - strandat 466.043 kb on - strandat 466.043 kb on - strandat 466.051 kb on + strandat 466.051 kb on + strandat 466.051 kb on + strandat 466.051 kb on + strandat 466.052 kb on - strandat 466.052 kb on - strandat 466.052 kb on - strandat 466.226 kb on + strandat 466.226 kb on + strandat 466.227 kb on - strandat 466.227 kb on - strandat 466.238 kb on - strandat 466.238 kb on - strandat 466.262 kb on - strandat 466.285 kb on - strandat 466.285 kb on - strandat 466.312 kb on + strandat 466.312 kb on + strandat 466.324 kb on + strandat 466.324 kb on + strandat 466.324 kb on + strandat 466.325 kb on - strandat 466.325 kb on - strandat 466.325 kb on - strandat 466.325 kb on - strandat 466.325 kb on - strandat 466.325 kb on - strandat 466.325 kb on - strandat 466.327 kb on + strandat 466.327 kb on + strandat 466.327 kb on + strandat 466.327 kb on + strandat 466.328 kb on - strandat 466.328 kb on - strandat 466.328 kb on - strandat 466.328 kb on - strandat 466.328 kb on - strandat 466.357 kb on + strandat 466.357 kb on + strandat 466.358 kb on - strandat 466.358 kb on - strandat 466.381 kb on + strandat 466.381 kb on + strandat 466.382 kb on - strandat 466.382 kb on - strandat 466.382 kb on - strandat 466.382 kb on - strandat 466.453 kb on - strand, within LRK53_RS01995at 466.462 kb on + strand, within LRK53_RS01995at 466.462 kb on + strand, within LRK53_RS01995at 466.462 kb on + strand, within LRK53_RS01995at 466.463 kb on - strand, within LRK53_RS01995at 466.463 kb on - strand, within LRK53_RS01995at 466.463 kb on - strand, within LRK53_RS01995at 466.463 kb on - strand, within LRK53_RS01995at 466.463 kb on - strand, within LRK53_RS01995at 466.463 kb on - strand, within LRK53_RS01995at 466.628 kb on + strand, within LRK53_RS01995at 466.628 kb on + strand, within LRK53_RS01995at 466.629 kb on - strand, within LRK53_RS01995at 466.629 kb on - strand, within LRK53_RS01995at 466.632 kb on - strand, within LRK53_RS01995at 466.790 kb on + strand, within LRK53_RS01995at 466.790 kb on + strand, within LRK53_RS01995at 466.790 kb on + strand, within LRK53_RS01995at 466.791 kb on - strand, within LRK53_RS01995at 466.791 kb on - strand, within LRK53_RS01995at 466.925 kb on + strand, within LRK53_RS01995at 466.948 kb on + strand, within LRK53_RS01995at 466.956 kb on + strand, within LRK53_RS01995at 466.957 kb on - strand, within LRK53_RS01995at 466.973 kb on + strand, within LRK53_RS01995at 467.072 kb on - strand, within LRK53_RS01995at 467.072 kb on - strand, within LRK53_RS01995at 467.203 kb on + strand, within LRK53_RS01995at 467.203 kb on + strand, within LRK53_RS01995at 467.203 kb on + strand, within LRK53_RS01995at 467.204 kb on - strand, within LRK53_RS01995at 467.204 kb on - strand, within LRK53_RS01995at 467.204 kb on - strand, within LRK53_RS01995at 467.281 kb on + strand, within LRK53_RS01995at 467.303 kb on - strand, within LRK53_RS01995at 467.321 kb on - strand, within LRK53_RS01995at 467.340 kb on - strand, within LRK53_RS01995at 467.450 kb on + strand, within LRK53_RS01995at 467.450 kb on + strand, within LRK53_RS01995at 467.450 kb on + strand, within LRK53_RS01995at 467.451 kb on - strand, within LRK53_RS01995at 467.451 kb on - strand, within LRK53_RS01995at 467.451 kb on - strand, within LRK53_RS01995at 467.473 kb on - strand, within LRK53_RS01995at 467.541 kb on + strand, within LRK53_RS01995at 467.542 kb on - strand, within LRK53_RS01995at 467.542 kb on - strand, within LRK53_RS01995at 467.662 kb on + strand, within LRK53_RS01995at 467.662 kb on + strand, within LRK53_RS01995at 467.662 kb on + strand, within LRK53_RS01995at 467.663 kb on - strand, within LRK53_RS01995at 467.663 kb on - strand, within LRK53_RS01995at 467.663 kb on - strand, within LRK53_RS01995at 467.707 kb on + strand, within LRK53_RS01995at 467.729 kb on + strand, within LRK53_RS01995at 467.730 kb on - strand, within LRK53_RS01995at 467.759 kb on - strand, within LRK53_RS01995at 467.764 kb on + strand, within LRK53_RS01995at 467.791 kb on + strand, within LRK53_RS01995at 467.792 kb on - strand, within LRK53_RS01995at 467.807 kb on + strand, within LRK53_RS01995at 467.807 kb on + strand, within LRK53_RS01995at 467.982 kb on + strandat 467.982 kb on + strandat 467.982 kb on + strandat 467.982 kb on + strandat 467.982 kb on + strandat 467.982 kb on + strandat 467.982 kb on + strandat 467.983 kb on - strandat 467.983 kb on - strandat 467.983 kb on - strandat 467.983 kb on - strandat 467.983 kb on - strandat 467.983 kb on - strandat 467.983 kb on - strandat 468.051 kb on + strandat 468.051 kb on + strandat 468.051 kb on + strandat 468.052 kb on - strandat 468.052 kb on - strandat 468.083 kb on + strandat 468.126 kb on + strandat 468.126 kb on + strandat 468.126 kb on + strandat 468.127 kb on - strandat 468.127 kb on - strandat 468.127 kb on - strandat 468.135 kb on + strandat 468.135 kb on + strandat 468.135 kb on + strandat 468.136 kb on - strandat 468.136 kb on - strandat 468.136 kb on - strandat 468.136 kb on - strandat 468.136 kb on - strandat 468.149 kb on + strandat 468.216 kb on + strandat 468.216 kb on + strandat 468.217 kb on - strandat 468.217 kb on - strandat 468.217 kb on - strandat 468.217 kb on - strandat 468.249 kb on + strandat 468.249 kb on + strandat 468.250 kb on - strandat 468.250 kb on - strandat 468.250 kb on - strandat 468.250 kb on - strandat 468.360 kb on + strandat 468.360 kb on + strandat 468.360 kb on + strandat 468.361 kb on - strandat 468.361 kb on - strandat 468.466 kb on + strandat 468.467 kb on - strandat 468.517 kb on + strandat 468.518 kb on - strandat 468.543 kb on + strandat 468.544 kb on - strand, within LRK53_RS02000at 468.544 kb on - strand, within LRK53_RS02000at 468.561 kb on + strand, within LRK53_RS02000at 468.561 kb on + strand, within LRK53_RS02000at 468.561 kb on + strand, within LRK53_RS02000at 468.561 kb on + strand, within LRK53_RS02000at 468.561 kb on + strand, within LRK53_RS02000at 468.562 kb on - strand, within LRK53_RS02000at 468.562 kb on - strand, within LRK53_RS02000at 468.562 kb on - strand, within LRK53_RS02000at 468.660 kb on + strand, within LRK53_RS02000at 468.660 kb on + strand, within LRK53_RS02000at 468.660 kb on + strand, within LRK53_RS02000at 468.660 kb on + strand, within LRK53_RS02000at 468.660 kb on + strand, within LRK53_RS02000at 468.661 kb on - strand, within LRK53_RS02000at 468.661 kb on - strand, within LRK53_RS02000at 468.837 kb on - strand, within LRK53_RS02000at 468.904 kb on + strand, within LRK53_RS02000at 468.904 kb on + strand, within LRK53_RS02000at 468.905 kb on - strand, within LRK53_RS02000at 468.952 kb on - strand, within LRK53_RS02000at 468.962 kb on + strand, within LRK53_RS02000at 468.962 kb on + strand, within LRK53_RS02000at 468.963 kb on - strand, within LRK53_RS02000at 468.963 kb on - strand, within LRK53_RS02000at 468.976 kb on + strand, within LRK53_RS02000at 468.977 kb on - strand, within LRK53_RS02000at 468.977 kb on - strand, within LRK53_RS02000at 469.018 kb on + strand, within LRK53_RS02000at 469.018 kb on + strand, within LRK53_RS02000at 469.018 kb on + strand, within LRK53_RS02000at 469.018 kb on + strand, within LRK53_RS02000at 469.019 kb on - strand, within LRK53_RS02000at 469.019 kb on - strand, within LRK53_RS02000at 469.019 kb on - strand, within LRK53_RS02000at 469.043 kb on + strand, within LRK53_RS02000at 469.044 kb on - strand, within LRK53_RS02000at 469.076 kb on + strand, within LRK53_RS02000at 469.077 kb on - strand, within LRK53_RS02000at 469.126 kb on + strand, within LRK53_RS02000at 469.127 kb on - strand, within LRK53_RS02000at 469.127 kb on - strand, within LRK53_RS02000

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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465,326 + LRK53_RS01990 0.78 +1.0
465,326 + LRK53_RS01990 0.78 +0.5
465,327 - LRK53_RS01990 0.78 +0.6
465,355 + LRK53_RS01990 0.79 -0.7
465,356 - LRK53_RS01990 0.79 -0.7
465,361 - LRK53_RS01990 0.79 -1.3
465,361 - LRK53_RS01990 0.79 +0.1
465,361 - LRK53_RS01990 0.79 -0.3
465,361 - LRK53_RS01990 0.79 -1.3
465,361 - LRK53_RS01990 0.79 -0.0
465,373 + LRK53_RS01990 0.79 +2.1
465,373 + LRK53_RS01990 0.79 -0.3
465,373 + LRK53_RS01990 0.79 +1.4
465,373 + LRK53_RS01990 0.79 +0.1
465,374 - LRK53_RS01990 0.79 +1.1
465,375 - LRK53_RS01990 0.79 -1.2
465,381 + LRK53_RS01990 0.80 -2.0
465,381 + LRK53_RS01990 0.80 -0.7
465,382 - LRK53_RS01990 0.80 -1.4
465,405 - LRK53_RS01990 0.80 +0.1
465,460 - LRK53_RS01990 0.81 -0.6
465,466 + LRK53_RS01990 0.82 +0.1
465,485 + LRK53_RS01990 0.82 +0.8
465,561 - LRK53_RS01990 0.84 -1.3
465,580 - LRK53_RS01990 0.84 -0.3
465,638 + LRK53_RS01990 0.86 +0.8
465,638 + LRK53_RS01990 0.86 -0.2
465,719 - LRK53_RS01990 0.87 +1.3
465,719 - LRK53_RS01990 0.87 -0.1
465,719 - LRK53_RS01990 0.87 -0.7
465,851 - +0.0
465,870 + -0.5
465,871 - -0.1
465,889 - +1.5
465,936 + +0.9
465,936 + -0.6
465,936 + -1.2
465,936 + +0.7
465,936 + +0.7
465,936 + -0.5
465,936 + -0.0
465,937 - -1.6
465,937 - +0.6
465,937 - -1.6
465,937 - -1.1
465,940 + -0.3
465,940 + -0.4
465,940 + +0.5
465,940 + -1.7
465,941 - -1.3
465,941 - -0.3
465,941 - -0.5
465,941 - -0.2
465,941 - -1.9
465,941 - +0.1
465,941 - -3.1
465,941 - +1.3
465,941 - +0.6
466,042 + -0.1
466,042 + +0.7
466,042 + +1.1
466,043 - +0.2
466,043 - -0.5
466,043 - +0.4
466,043 - +1.9
466,051 + +1.0
466,051 + -0.6
466,051 + +1.3
466,051 + +0.8
466,052 - -1.4
466,052 - -1.9
466,052 - +0.9
466,226 + +2.1
466,226 + +0.7
466,227 - -0.2
466,227 - -2.1
466,238 - -1.0
466,238 - +0.5
466,262 - +1.2
466,285 - +0.3
466,285 - +1.5
466,312 + -1.5
466,312 + -0.3
466,324 + +0.1
466,324 + -0.6
466,324 + +0.4
466,325 - +1.9
466,325 - -0.4
466,325 - -0.4
466,325 - +0.1
466,325 - +0.0
466,325 - +1.0
466,325 - -0.1
466,327 + +0.3
466,327 + -0.6
466,327 + +0.1
466,327 + -1.2
466,328 - -2.1
466,328 - -0.1
466,328 - -0.3
466,328 - -0.6
466,328 - -1.0
466,357 + +0.3
466,357 + -0.6
466,358 - -1.3
466,358 - -1.8
466,381 + +0.0
466,381 + -1.9
466,382 - -1.0
466,382 - +0.4
466,382 - -1.1
466,382 - -0.5
466,453 - LRK53_RS01995 0.11 -0.1
466,462 + LRK53_RS01995 0.11 +1.1
466,462 + LRK53_RS01995 0.11 -0.1
466,462 + LRK53_RS01995 0.11 -0.9
466,463 - LRK53_RS01995 0.11 +1.4
466,463 - LRK53_RS01995 0.11 -2.5
466,463 - LRK53_RS01995 0.11 +0.9
466,463 - LRK53_RS01995 0.11 +2.6
466,463 - LRK53_RS01995 0.11 +0.4
466,463 - LRK53_RS01995 0.11 -0.6
466,628 + LRK53_RS01995 0.20 +0.2
466,628 + LRK53_RS01995 0.20 -0.4
466,629 - LRK53_RS01995 0.20 +1.4
466,629 - LRK53_RS01995 0.20 -0.1
466,632 - LRK53_RS01995 0.20 +1.2
466,790 + LRK53_RS01995 0.29 +2.7
466,790 + LRK53_RS01995 0.29 +1.4
466,790 + LRK53_RS01995 0.29 -1.6
466,791 - LRK53_RS01995 0.29 +0.3
466,791 - LRK53_RS01995 0.29 -1.3
466,925 + LRK53_RS01995 0.36 -0.3
466,948 + LRK53_RS01995 0.37 -1.3
466,956 + LRK53_RS01995 0.37 +0.7
466,957 - LRK53_RS01995 0.37 +2.1
466,973 + LRK53_RS01995 0.38 +0.7
467,072 - LRK53_RS01995 0.44 -0.9
467,072 - LRK53_RS01995 0.44 -0.1
467,203 + LRK53_RS01995 0.51 +0.7
467,203 + LRK53_RS01995 0.51 +0.9
467,203 + LRK53_RS01995 0.51 -1.2
467,204 - LRK53_RS01995 0.51 +0.1
467,204 - LRK53_RS01995 0.51 -0.2
467,204 - LRK53_RS01995 0.51 +0.9
467,281 + LRK53_RS01995 0.55 -0.4
467,303 - LRK53_RS01995 0.56 -0.7
467,321 - LRK53_RS01995 0.57 +0.4
467,340 - LRK53_RS01995 0.58 +0.4
467,450 + LRK53_RS01995 0.64 -2.3
467,450 + LRK53_RS01995 0.64 -0.0
467,450 + LRK53_RS01995 0.64 +2.4
467,451 - LRK53_RS01995 0.64 -1.4
467,451 - LRK53_RS01995 0.64 -1.1
467,451 - LRK53_RS01995 0.64 -0.1
467,473 - LRK53_RS01995 0.65 +2.4
467,541 + LRK53_RS01995 0.69 +0.4
467,542 - LRK53_RS01995 0.69 -0.5
467,542 - LRK53_RS01995 0.69 +0.3
467,662 + LRK53_RS01995 0.75 -0.2
467,662 + LRK53_RS01995 0.75 -0.6
467,662 + LRK53_RS01995 0.75 -0.5
467,663 - LRK53_RS01995 0.75 -1.0
467,663 - LRK53_RS01995 0.75 +1.1
467,663 - LRK53_RS01995 0.75 +0.1
467,707 + LRK53_RS01995 0.77 -0.3
467,729 + LRK53_RS01995 0.79 -0.8
467,730 - LRK53_RS01995 0.79 -0.5
467,759 - LRK53_RS01995 0.80 +0.3
467,764 + LRK53_RS01995 0.80 +0.4
467,791 + LRK53_RS01995 0.82 +2.4
467,792 - LRK53_RS01995 0.82 -0.2
467,807 + LRK53_RS01995 0.83 +0.7
467,807 + LRK53_RS01995 0.83 +0.1
467,982 + +0.4
467,982 + +0.3
467,982 + -0.6
467,982 + +1.4
467,982 + +1.6
467,982 + -0.1
467,982 + -0.1
467,983 - +1.3
467,983 - +0.9
467,983 - -0.9
467,983 - +0.4
467,983 - +0.2
467,983 - -1.7
467,983 - -1.5
468,051 + -0.1
468,051 + +0.4
468,051 + -0.4
468,052 - -0.1
468,052 - +1.8
468,083 + +0.6
468,126 + +0.5
468,126 + -0.1
468,126 + -1.2
468,127 - +1.1
468,127 - -0.3
468,127 - -0.2
468,135 + -2.2
468,135 + -1.7
468,135 + -0.5
468,136 - +1.6
468,136 - +1.9
468,136 - +2.1
468,136 - +0.1
468,136 - +0.0
468,149 + +0.9
468,216 + -0.3
468,216 + -0.6
468,217 - -0.5
468,217 - -2.0
468,217 - -0.8
468,217 - +2.7
468,249 + -1.1
468,249 + -0.9
468,250 - +1.1
468,250 - -1.2
468,250 - -0.1
468,250 - -1.8
468,360 + -2.6
468,360 + +0.1
468,360 + +0.1
468,361 - -1.7
468,361 - +0.4
468,466 + -0.1
468,467 - -0.1
468,517 + -0.1
468,518 - -0.2
468,543 + +0.9
468,544 - LRK53_RS02000 0.10 +1.2
468,544 - LRK53_RS02000 0.10 -1.7
468,561 + LRK53_RS02000 0.10 +0.7
468,561 + LRK53_RS02000 0.10 -1.4
468,561 + LRK53_RS02000 0.10 -1.7
468,561 + LRK53_RS02000 0.10 -0.3
468,561 + LRK53_RS02000 0.10 -1.7
468,562 - LRK53_RS02000 0.10 -2.2
468,562 - LRK53_RS02000 0.10 -1.9
468,562 - LRK53_RS02000 0.10 +2.6
468,660 + LRK53_RS02000 0.13 -0.2
468,660 + LRK53_RS02000 0.13 +1.9
468,660 + LRK53_RS02000 0.13 -0.1
468,660 + LRK53_RS02000 0.13 +0.2
468,660 + LRK53_RS02000 0.13 -1.1
468,661 - LRK53_RS02000 0.13 -0.6
468,661 - LRK53_RS02000 0.13 +1.5
468,837 - LRK53_RS02000 0.17 +1.4
468,904 + LRK53_RS02000 0.19 -1.8
468,904 + LRK53_RS02000 0.19 +1.1
468,905 - LRK53_RS02000 0.19 -0.2
468,952 - LRK53_RS02000 0.20 +1.7
468,962 + LRK53_RS02000 0.20 +0.5
468,962 + LRK53_RS02000 0.20 -0.1
468,963 - LRK53_RS02000 0.20 +1.1
468,963 - LRK53_RS02000 0.20 -0.1
468,976 + LRK53_RS02000 0.21 -0.1
468,977 - LRK53_RS02000 0.21 +0.1
468,977 - LRK53_RS02000 0.21 -1.2
469,018 + LRK53_RS02000 0.22 -1.9
469,018 + LRK53_RS02000 0.22 -1.7
469,018 + LRK53_RS02000 0.22 -1.9
469,018 + LRK53_RS02000 0.22 -1.8
469,019 - LRK53_RS02000 0.22 +1.0
469,019 - LRK53_RS02000 0.22 -0.8
469,019 - LRK53_RS02000 0.22 -0.5
469,043 + LRK53_RS02000 0.22 -0.2
469,044 - LRK53_RS02000 0.22 +1.3
469,076 + LRK53_RS02000 0.23 +0.2
469,077 - LRK53_RS02000 0.23 -0.1
469,126 + LRK53_RS02000 0.24 +1.3
469,127 - LRK53_RS02000 0.24 +1.0
469,127 - LRK53_RS02000 0.24 +0.1

Or see this region's nucleotide sequence