Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS01990 and LRK53_RS01995 overlap by 4 nucleotides LRK53_RS01995 and LRK53_RS02000 are separated by 8 nucleotides
LRK53_RS01990: LRK53_RS01990 - SAM-dependent DNA methyltransferase, at 461,978 to 466,255
_RS01990
LRK53_RS01995: LRK53_RS01995 - ATP-binding protein, at 466,252 to 468,132
_RS01995
LRK53_RS02000: LRK53_RS02000 - DISARM system helicase DrmA, at 468,141 to 472,166
_RS02000
Position (kb) 466
467
468
469 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 465.326 kb on + strand, within LRK53_RS01990 at 465.326 kb on + strand, within LRK53_RS01990 at 465.327 kb on - strand, within LRK53_RS01990 at 465.355 kb on + strand, within LRK53_RS01990 at 465.356 kb on - strand, within LRK53_RS01990 at 465.361 kb on - strand, within LRK53_RS01990 at 465.361 kb on - strand, within LRK53_RS01990 at 465.361 kb on - strand, within LRK53_RS01990 at 465.361 kb on - strand, within LRK53_RS01990 at 465.361 kb on - strand, within LRK53_RS01990 at 465.373 kb on + strand, within LRK53_RS01990 at 465.373 kb on + strand, within LRK53_RS01990 at 465.373 kb on + strand, within LRK53_RS01990 at 465.373 kb on + strand, within LRK53_RS01990 at 465.374 kb on - strand, within LRK53_RS01990 at 465.375 kb on - strand, within LRK53_RS01990 at 465.381 kb on + strand, within LRK53_RS01990 at 465.381 kb on + strand, within LRK53_RS01990 at 465.382 kb on - strand, within LRK53_RS01990 at 465.405 kb on - strand, within LRK53_RS01990 at 465.460 kb on - strand, within LRK53_RS01990 at 465.466 kb on + strand, within LRK53_RS01990 at 465.485 kb on + strand, within LRK53_RS01990 at 465.561 kb on - strand, within LRK53_RS01990 at 465.580 kb on - strand, within LRK53_RS01990 at 465.638 kb on + strand, within LRK53_RS01990 at 465.638 kb on + strand, within LRK53_RS01990 at 465.719 kb on - strand, within LRK53_RS01990 at 465.719 kb on - strand, within LRK53_RS01990 at 465.719 kb on - strand, within LRK53_RS01990 at 465.851 kb on - strand at 465.870 kb on + strand at 465.871 kb on - strand at 465.889 kb on - strand at 465.936 kb on + strand at 465.936 kb on + strand at 465.936 kb on + strand at 465.936 kb on + strand at 465.936 kb on + strand at 465.936 kb on + strand at 465.936 kb on + strand at 465.937 kb on - strand at 465.937 kb on - strand at 465.937 kb on - strand at 465.937 kb on - strand at 465.940 kb on + strand at 465.940 kb on + strand at 465.940 kb on + strand at 465.940 kb on + strand at 465.941 kb on - strand at 465.941 kb on - strand at 465.941 kb on - strand at 465.941 kb on - strand at 465.941 kb on - strand at 465.941 kb on - strand at 465.941 kb on - strand at 465.941 kb on - strand at 465.941 kb on - strand at 466.042 kb on + strand at 466.042 kb on + strand at 466.042 kb on + strand at 466.043 kb on - strand at 466.043 kb on - strand at 466.043 kb on - strand at 466.043 kb on - strand at 466.051 kb on + strand at 466.051 kb on + strand at 466.051 kb on + strand at 466.051 kb on + strand at 466.052 kb on - strand at 466.052 kb on - strand at 466.052 kb on - strand at 466.226 kb on + strand at 466.226 kb on + strand at 466.227 kb on - strand at 466.227 kb on - strand at 466.238 kb on - strand at 466.238 kb on - strand at 466.262 kb on - strand at 466.285 kb on - strand at 466.285 kb on - strand at 466.312 kb on + strand at 466.312 kb on + strand at 466.324 kb on + strand at 466.324 kb on + strand at 466.324 kb on + strand at 466.325 kb on - strand at 466.325 kb on - strand at 466.325 kb on - strand at 466.325 kb on - strand at 466.325 kb on - strand at 466.325 kb on - strand at 466.325 kb on - strand at 466.327 kb on + strand at 466.327 kb on + strand at 466.327 kb on + strand at 466.327 kb on + strand at 466.328 kb on - strand at 466.328 kb on - strand at 466.328 kb on - strand at 466.328 kb on - strand at 466.328 kb on - strand at 466.357 kb on + strand at 466.357 kb on + strand at 466.358 kb on - strand at 466.358 kb on - strand at 466.381 kb on + strand at 466.381 kb on + strand at 466.382 kb on - strand at 466.382 kb on - strand at 466.382 kb on - strand at 466.382 kb on - strand at 466.453 kb on - strand, within LRK53_RS01995 at 466.462 kb on + strand, within LRK53_RS01995 at 466.462 kb on + strand, within LRK53_RS01995 at 466.462 kb on + strand, within LRK53_RS01995 at 466.463 kb on - strand, within LRK53_RS01995 at 466.463 kb on - strand, within LRK53_RS01995 at 466.463 kb on - strand, within LRK53_RS01995 at 466.463 kb on - strand, within LRK53_RS01995 at 466.463 kb on - strand, within LRK53_RS01995 at 466.463 kb on - strand, within LRK53_RS01995 at 466.628 kb on + strand, within LRK53_RS01995 at 466.628 kb on + strand, within LRK53_RS01995 at 466.629 kb on - strand, within LRK53_RS01995 at 466.629 kb on - strand, within LRK53_RS01995 at 466.632 kb on - strand, within LRK53_RS01995 at 466.790 kb on + strand, within LRK53_RS01995 at 466.790 kb on + strand, within LRK53_RS01995 at 466.790 kb on + strand, within LRK53_RS01995 at 466.791 kb on - strand, within LRK53_RS01995 at 466.791 kb on - strand, within LRK53_RS01995 at 466.925 kb on + strand, within LRK53_RS01995 at 466.948 kb on + strand, within LRK53_RS01995 at 466.956 kb on + strand, within LRK53_RS01995 at 466.957 kb on - strand, within LRK53_RS01995 at 466.973 kb on + strand, within LRK53_RS01995 at 467.072 kb on - strand, within LRK53_RS01995 at 467.072 kb on - strand, within LRK53_RS01995 at 467.203 kb on + strand, within LRK53_RS01995 at 467.203 kb on + strand, within LRK53_RS01995 at 467.203 kb on + strand, within LRK53_RS01995 at 467.204 kb on - strand, within LRK53_RS01995 at 467.204 kb on - strand, within LRK53_RS01995 at 467.204 kb on - strand, within LRK53_RS01995 at 467.281 kb on + strand, within LRK53_RS01995 at 467.303 kb on - strand, within LRK53_RS01995 at 467.321 kb on - strand, within LRK53_RS01995 at 467.340 kb on - strand, within LRK53_RS01995 at 467.450 kb on + strand, within LRK53_RS01995 at 467.450 kb on + strand, within LRK53_RS01995 at 467.450 kb on + strand, within LRK53_RS01995 at 467.451 kb on - strand, within LRK53_RS01995 at 467.451 kb on - strand, within LRK53_RS01995 at 467.451 kb on - strand, within LRK53_RS01995 at 467.473 kb on - strand, within LRK53_RS01995 at 467.541 kb on + strand, within LRK53_RS01995 at 467.542 kb on - strand, within LRK53_RS01995 at 467.542 kb on - strand, within LRK53_RS01995 at 467.662 kb on + strand, within LRK53_RS01995 at 467.662 kb on + strand, within LRK53_RS01995 at 467.662 kb on + strand, within LRK53_RS01995 at 467.663 kb on - strand, within LRK53_RS01995 at 467.663 kb on - strand, within LRK53_RS01995 at 467.663 kb on - strand, within LRK53_RS01995 at 467.707 kb on + strand, within LRK53_RS01995 at 467.729 kb on + strand, within LRK53_RS01995 at 467.730 kb on - strand, within LRK53_RS01995 at 467.759 kb on - strand, within LRK53_RS01995 at 467.764 kb on + strand, within LRK53_RS01995 at 467.791 kb on + strand, within LRK53_RS01995 at 467.792 kb on - strand, within LRK53_RS01995 at 467.807 kb on + strand, within LRK53_RS01995 at 467.807 kb on + strand, within LRK53_RS01995 at 467.982 kb on + strand at 467.982 kb on + strand at 467.982 kb on + strand at 467.982 kb on + strand at 467.982 kb on + strand at 467.982 kb on + strand at 467.982 kb on + strand at 467.983 kb on - strand at 467.983 kb on - strand at 467.983 kb on - strand at 467.983 kb on - strand at 467.983 kb on - strand at 467.983 kb on - strand at 467.983 kb on - strand at 468.051 kb on + strand at 468.051 kb on + strand at 468.051 kb on + strand at 468.052 kb on - strand at 468.052 kb on - strand at 468.083 kb on + strand at 468.126 kb on + strand at 468.126 kb on + strand at 468.126 kb on + strand at 468.127 kb on - strand at 468.127 kb on - strand at 468.127 kb on - strand at 468.135 kb on + strand at 468.135 kb on + strand at 468.135 kb on + strand at 468.136 kb on - strand at 468.136 kb on - strand at 468.136 kb on - strand at 468.136 kb on - strand at 468.136 kb on - strand at 468.149 kb on + strand at 468.216 kb on + strand at 468.216 kb on + strand at 468.217 kb on - strand at 468.217 kb on - strand at 468.217 kb on - strand at 468.217 kb on - strand at 468.249 kb on + strand at 468.249 kb on + strand at 468.250 kb on - strand at 468.250 kb on - strand at 468.250 kb on - strand at 468.250 kb on - strand at 468.360 kb on + strand at 468.360 kb on + strand at 468.360 kb on + strand at 468.361 kb on - strand at 468.361 kb on - strand at 468.466 kb on + strand at 468.467 kb on - strand at 468.517 kb on + strand at 468.518 kb on - strand at 468.543 kb on + strand at 468.544 kb on - strand, within LRK53_RS02000 at 468.544 kb on - strand, within LRK53_RS02000 at 468.561 kb on + strand, within LRK53_RS02000 at 468.561 kb on + strand, within LRK53_RS02000 at 468.561 kb on + strand, within LRK53_RS02000 at 468.561 kb on + strand, within LRK53_RS02000 at 468.561 kb on + strand, within LRK53_RS02000 at 468.562 kb on - strand, within LRK53_RS02000 at 468.562 kb on - strand, within LRK53_RS02000 at 468.562 kb on - strand, within LRK53_RS02000 at 468.660 kb on + strand, within LRK53_RS02000 at 468.660 kb on + strand, within LRK53_RS02000 at 468.660 kb on + strand, within LRK53_RS02000 at 468.660 kb on + strand, within LRK53_RS02000 at 468.660 kb on + strand, within LRK53_RS02000 at 468.661 kb on - strand, within LRK53_RS02000 at 468.661 kb on - strand, within LRK53_RS02000 at 468.837 kb on - strand, within LRK53_RS02000 at 468.904 kb on + strand, within LRK53_RS02000 at 468.904 kb on + strand, within LRK53_RS02000 at 468.905 kb on - strand, within LRK53_RS02000 at 468.952 kb on - strand, within LRK53_RS02000 at 468.962 kb on + strand, within LRK53_RS02000 at 468.962 kb on + strand, within LRK53_RS02000 at 468.963 kb on - strand, within LRK53_RS02000 at 468.963 kb on - strand, within LRK53_RS02000 at 468.976 kb on + strand, within LRK53_RS02000 at 468.977 kb on - strand, within LRK53_RS02000 at 468.977 kb on - strand, within LRK53_RS02000 at 469.018 kb on + strand, within LRK53_RS02000 at 469.018 kb on + strand, within LRK53_RS02000 at 469.018 kb on + strand, within LRK53_RS02000 at 469.018 kb on + strand, within LRK53_RS02000 at 469.019 kb on - strand, within LRK53_RS02000 at 469.019 kb on - strand, within LRK53_RS02000 at 469.019 kb on - strand, within LRK53_RS02000 at 469.043 kb on + strand, within LRK53_RS02000 at 469.044 kb on - strand, within LRK53_RS02000 at 469.076 kb on + strand, within LRK53_RS02000 at 469.077 kb on - strand, within LRK53_RS02000 at 469.126 kb on + strand, within LRK53_RS02000 at 469.127 kb on - strand, within LRK53_RS02000 at 469.127 kb on - strand, within LRK53_RS02000
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 465,326 + LRK53_RS01990 0.78 +1.0 465,326 + LRK53_RS01990 0.78 +0.5 465,327 - LRK53_RS01990 0.78 +0.6 465,355 + LRK53_RS01990 0.79 -0.7 465,356 - LRK53_RS01990 0.79 -0.7 465,361 - LRK53_RS01990 0.79 -1.3 465,361 - LRK53_RS01990 0.79 +0.1 465,361 - LRK53_RS01990 0.79 -0.3 465,361 - LRK53_RS01990 0.79 -1.3 465,361 - LRK53_RS01990 0.79 -0.0 465,373 + LRK53_RS01990 0.79 +2.1 465,373 + LRK53_RS01990 0.79 -0.3 465,373 + LRK53_RS01990 0.79 +1.4 465,373 + LRK53_RS01990 0.79 +0.1 465,374 - LRK53_RS01990 0.79 +1.1 465,375 - LRK53_RS01990 0.79 -1.2 465,381 + LRK53_RS01990 0.80 -2.0 465,381 + LRK53_RS01990 0.80 -0.7 465,382 - LRK53_RS01990 0.80 -1.4 465,405 - LRK53_RS01990 0.80 +0.1 465,460 - LRK53_RS01990 0.81 -0.6 465,466 + LRK53_RS01990 0.82 +0.1 465,485 + LRK53_RS01990 0.82 +0.8 465,561 - LRK53_RS01990 0.84 -1.3 465,580 - LRK53_RS01990 0.84 -0.3 465,638 + LRK53_RS01990 0.86 +0.8 465,638 + LRK53_RS01990 0.86 -0.2 465,719 - LRK53_RS01990 0.87 +1.3 465,719 - LRK53_RS01990 0.87 -0.1 465,719 - LRK53_RS01990 0.87 -0.7 465,851 - +0.0 465,870 + -0.5 465,871 - -0.1 465,889 - +1.5 465,936 + +0.9 465,936 + -0.6 465,936 + -1.2 465,936 + +0.7 465,936 + +0.7 465,936 + -0.5 465,936 + -0.0 465,937 - -1.6 465,937 - +0.6 465,937 - -1.6 465,937 - -1.1 465,940 + -0.3 465,940 + -0.4 465,940 + +0.5 465,940 + -1.7 465,941 - -1.3 465,941 - -0.3 465,941 - -0.5 465,941 - -0.2 465,941 - -1.9 465,941 - +0.1 465,941 - -3.1 465,941 - +1.3 465,941 - +0.6 466,042 + -0.1 466,042 + +0.7 466,042 + +1.1 466,043 - +0.2 466,043 - -0.5 466,043 - +0.4 466,043 - +1.9 466,051 + +1.0 466,051 + -0.6 466,051 + +1.3 466,051 + +0.8 466,052 - -1.4 466,052 - -1.9 466,052 - +0.9 466,226 + +2.1 466,226 + +0.7 466,227 - -0.2 466,227 - -2.1 466,238 - -1.0 466,238 - +0.5 466,262 - +1.2 466,285 - +0.3 466,285 - +1.5 466,312 + -1.5 466,312 + -0.3 466,324 + +0.1 466,324 + -0.6 466,324 + +0.4 466,325 - +1.9 466,325 - -0.4 466,325 - -0.4 466,325 - +0.1 466,325 - +0.0 466,325 - +1.0 466,325 - -0.1 466,327 + +0.3 466,327 + -0.6 466,327 + +0.1 466,327 + -1.2 466,328 - -2.1 466,328 - -0.1 466,328 - -0.3 466,328 - -0.6 466,328 - -1.0 466,357 + +0.3 466,357 + -0.6 466,358 - -1.3 466,358 - -1.8 466,381 + +0.0 466,381 + -1.9 466,382 - -1.0 466,382 - +0.4 466,382 - -1.1 466,382 - -0.5 466,453 - LRK53_RS01995 0.11 -0.1 466,462 + LRK53_RS01995 0.11 +1.1 466,462 + LRK53_RS01995 0.11 -0.1 466,462 + LRK53_RS01995 0.11 -0.9 466,463 - LRK53_RS01995 0.11 +1.4 466,463 - LRK53_RS01995 0.11 -2.5 466,463 - LRK53_RS01995 0.11 +0.9 466,463 - LRK53_RS01995 0.11 +2.6 466,463 - LRK53_RS01995 0.11 +0.4 466,463 - LRK53_RS01995 0.11 -0.6 466,628 + LRK53_RS01995 0.20 +0.2 466,628 + LRK53_RS01995 0.20 -0.4 466,629 - LRK53_RS01995 0.20 +1.4 466,629 - LRK53_RS01995 0.20 -0.1 466,632 - LRK53_RS01995 0.20 +1.2 466,790 + LRK53_RS01995 0.29 +2.7 466,790 + LRK53_RS01995 0.29 +1.4 466,790 + LRK53_RS01995 0.29 -1.6 466,791 - LRK53_RS01995 0.29 +0.3 466,791 - LRK53_RS01995 0.29 -1.3 466,925 + LRK53_RS01995 0.36 -0.3 466,948 + LRK53_RS01995 0.37 -1.3 466,956 + LRK53_RS01995 0.37 +0.7 466,957 - LRK53_RS01995 0.37 +2.1 466,973 + LRK53_RS01995 0.38 +0.7 467,072 - LRK53_RS01995 0.44 -0.9 467,072 - LRK53_RS01995 0.44 -0.1 467,203 + LRK53_RS01995 0.51 +0.7 467,203 + LRK53_RS01995 0.51 +0.9 467,203 + LRK53_RS01995 0.51 -1.2 467,204 - LRK53_RS01995 0.51 +0.1 467,204 - LRK53_RS01995 0.51 -0.2 467,204 - LRK53_RS01995 0.51 +0.9 467,281 + LRK53_RS01995 0.55 -0.4 467,303 - LRK53_RS01995 0.56 -0.7 467,321 - LRK53_RS01995 0.57 +0.4 467,340 - LRK53_RS01995 0.58 +0.4 467,450 + LRK53_RS01995 0.64 -2.3 467,450 + LRK53_RS01995 0.64 -0.0 467,450 + LRK53_RS01995 0.64 +2.4 467,451 - LRK53_RS01995 0.64 -1.4 467,451 - LRK53_RS01995 0.64 -1.1 467,451 - LRK53_RS01995 0.64 -0.1 467,473 - LRK53_RS01995 0.65 +2.4 467,541 + LRK53_RS01995 0.69 +0.4 467,542 - LRK53_RS01995 0.69 -0.5 467,542 - LRK53_RS01995 0.69 +0.3 467,662 + LRK53_RS01995 0.75 -0.2 467,662 + LRK53_RS01995 0.75 -0.6 467,662 + LRK53_RS01995 0.75 -0.5 467,663 - LRK53_RS01995 0.75 -1.0 467,663 - LRK53_RS01995 0.75 +1.1 467,663 - LRK53_RS01995 0.75 +0.1 467,707 + LRK53_RS01995 0.77 -0.3 467,729 + LRK53_RS01995 0.79 -0.8 467,730 - LRK53_RS01995 0.79 -0.5 467,759 - LRK53_RS01995 0.80 +0.3 467,764 + LRK53_RS01995 0.80 +0.4 467,791 + LRK53_RS01995 0.82 +2.4 467,792 - LRK53_RS01995 0.82 -0.2 467,807 + LRK53_RS01995 0.83 +0.7 467,807 + LRK53_RS01995 0.83 +0.1 467,982 + +0.4 467,982 + +0.3 467,982 + -0.6 467,982 + +1.4 467,982 + +1.6 467,982 + -0.1 467,982 + -0.1 467,983 - +1.3 467,983 - +0.9 467,983 - -0.9 467,983 - +0.4 467,983 - +0.2 467,983 - -1.7 467,983 - -1.5 468,051 + -0.1 468,051 + +0.4 468,051 + -0.4 468,052 - -0.1 468,052 - +1.8 468,083 + +0.6 468,126 + +0.5 468,126 + -0.1 468,126 + -1.2 468,127 - +1.1 468,127 - -0.3 468,127 - -0.2 468,135 + -2.2 468,135 + -1.7 468,135 + -0.5 468,136 - +1.6 468,136 - +1.9 468,136 - +2.1 468,136 - +0.1 468,136 - +0.0 468,149 + +0.9 468,216 + -0.3 468,216 + -0.6 468,217 - -0.5 468,217 - -2.0 468,217 - -0.8 468,217 - +2.7 468,249 + -1.1 468,249 + -0.9 468,250 - +1.1 468,250 - -1.2 468,250 - -0.1 468,250 - -1.8 468,360 + -2.6 468,360 + +0.1 468,360 + +0.1 468,361 - -1.7 468,361 - +0.4 468,466 + -0.1 468,467 - -0.1 468,517 + -0.1 468,518 - -0.2 468,543 + +0.9 468,544 - LRK53_RS02000 0.10 +1.2 468,544 - LRK53_RS02000 0.10 -1.7 468,561 + LRK53_RS02000 0.10 +0.7 468,561 + LRK53_RS02000 0.10 -1.4 468,561 + LRK53_RS02000 0.10 -1.7 468,561 + LRK53_RS02000 0.10 -0.3 468,561 + LRK53_RS02000 0.10 -1.7 468,562 - LRK53_RS02000 0.10 -2.2 468,562 - LRK53_RS02000 0.10 -1.9 468,562 - LRK53_RS02000 0.10 +2.6 468,660 + LRK53_RS02000 0.13 -0.2 468,660 + LRK53_RS02000 0.13 +1.9 468,660 + LRK53_RS02000 0.13 -0.1 468,660 + LRK53_RS02000 0.13 +0.2 468,660 + LRK53_RS02000 0.13 -1.1 468,661 - LRK53_RS02000 0.13 -0.6 468,661 - LRK53_RS02000 0.13 +1.5 468,837 - LRK53_RS02000 0.17 +1.4 468,904 + LRK53_RS02000 0.19 -1.8 468,904 + LRK53_RS02000 0.19 +1.1 468,905 - LRK53_RS02000 0.19 -0.2 468,952 - LRK53_RS02000 0.20 +1.7 468,962 + LRK53_RS02000 0.20 +0.5 468,962 + LRK53_RS02000 0.20 -0.1 468,963 - LRK53_RS02000 0.20 +1.1 468,963 - LRK53_RS02000 0.20 -0.1 468,976 + LRK53_RS02000 0.21 -0.1 468,977 - LRK53_RS02000 0.21 +0.1 468,977 - LRK53_RS02000 0.21 -1.2 469,018 + LRK53_RS02000 0.22 -1.9 469,018 + LRK53_RS02000 0.22 -1.7 469,018 + LRK53_RS02000 0.22 -1.9 469,018 + LRK53_RS02000 0.22 -1.8 469,019 - LRK53_RS02000 0.22 +1.0 469,019 - LRK53_RS02000 0.22 -0.8 469,019 - LRK53_RS02000 0.22 -0.5 469,043 + LRK53_RS02000 0.22 -0.2 469,044 - LRK53_RS02000 0.22 +1.3 469,076 + LRK53_RS02000 0.23 +0.2 469,077 - LRK53_RS02000 0.23 -0.1 469,126 + LRK53_RS02000 0.24 +1.3 469,127 - LRK53_RS02000 0.24 +1.0 469,127 - LRK53_RS02000 0.24 +0.1
Or see this region's nucleotide sequence