Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS01760 and LRK53_RS01765 are separated by 65 nucleotides LRK53_RS01765 and LRK53_RS01770 are separated by 95 nucleotides LRK53_RS01770 and LRK53_RS01775 are separated by 10 nucleotides
LRK53_RS01760: LRK53_RS01760 - DUF2333 family protein, at 412,189 to 413,211
_RS01760
LRK53_RS01765: LRK53_RS01765 - inorganic diphosphatase, at 413,277 to 413,816
_RS01765
LRK53_RS01770: LRK53_RS01770 - 2OG-Fe(II) oxygenase, at 413,912 to 414,766
_RS01770
LRK53_RS01775: LRK53_RS01775 - prolyl oligopeptidase family serine peptidase, at 414,777 to 416,909
_RS01775
Position (kb) 413
414
415 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 412.939 kb on + strand, within LRK53_RS01760 at 412.939 kb on + strand, within LRK53_RS01760 at 412.939 kb on + strand, within LRK53_RS01760 at 412.939 kb on + strand, within LRK53_RS01760 at 412.939 kb on + strand, within LRK53_RS01760 at 412.954 kb on + strand, within LRK53_RS01760 at 412.955 kb on - strand, within LRK53_RS01760 at 412.955 kb on - strand, within LRK53_RS01760 at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.860 kb on + strand at 413.860 kb on + strand at 413.860 kb on + strand at 413.861 kb on - strand at 414.036 kb on + strand, within LRK53_RS01770 at 414.036 kb on + strand, within LRK53_RS01770 at 414.036 kb on + strand, within LRK53_RS01770 at 414.036 kb on + strand, within LRK53_RS01770 at 414.037 kb on - strand, within LRK53_RS01770 at 414.037 kb on - strand, within LRK53_RS01770 at 414.037 kb on - strand, within LRK53_RS01770 at 414.037 kb on - strand, within LRK53_RS01770 at 414.120 kb on + strand, within LRK53_RS01770 at 414.120 kb on + strand, within LRK53_RS01770 at 414.120 kb on + strand, within LRK53_RS01770 at 414.120 kb on + strand, within LRK53_RS01770 at 414.120 kb on + strand, within LRK53_RS01770 at 414.120 kb on + strand, within LRK53_RS01770 at 414.120 kb on + strand, within LRK53_RS01770 at 414.120 kb on + strand, within LRK53_RS01770 at 414.121 kb on - strand, within LRK53_RS01770 at 414.121 kb on - strand, within LRK53_RS01770 at 414.121 kb on - strand, within LRK53_RS01770 at 414.121 kb on - strand, within LRK53_RS01770 at 414.213 kb on + strand, within LRK53_RS01770 at 414.214 kb on - strand, within LRK53_RS01770 at 414.214 kb on - strand, within LRK53_RS01770 at 414.214 kb on - strand, within LRK53_RS01770 at 414.214 kb on - strand, within LRK53_RS01770 at 414.214 kb on - strand, within LRK53_RS01770 at 414.231 kb on + strand, within LRK53_RS01770 at 414.231 kb on + strand, within LRK53_RS01770 at 414.231 kb on + strand, within LRK53_RS01770 at 414.231 kb on + strand, within LRK53_RS01770 at 414.231 kb on + strand, within LRK53_RS01770 at 414.231 kb on + strand, within LRK53_RS01770 at 414.231 kb on + strand, within LRK53_RS01770 at 414.231 kb on + strand, within LRK53_RS01770 at 414.232 kb on - strand, within LRK53_RS01770 at 414.232 kb on - strand, within LRK53_RS01770 at 414.232 kb on - strand, within LRK53_RS01770 at 414.232 kb on - strand, within LRK53_RS01770 at 414.232 kb on - strand, within LRK53_RS01770 at 414.232 kb on - strand, within LRK53_RS01770 at 414.657 kb on + strand, within LRK53_RS01770 at 414.657 kb on + strand, within LRK53_RS01770 at 414.658 kb on - strand, within LRK53_RS01770 at 414.778 kb on + strand at 414.778 kb on + strand at 414.778 kb on + strand at 414.778 kb on + strand at 414.779 kb on - strand at 414.779 kb on - strand at 414.779 kb on - strand at 414.805 kb on + strand at 414.805 kb on + strand at 414.805 kb on + strand at 414.805 kb on + strand at 414.805 kb on + strand at 414.805 kb on + strand at 414.806 kb on - strand at 414.877 kb on + strand at 414.877 kb on + strand at 414.878 kb on - strand at 414.878 kb on - strand at 414.878 kb on - strand at 414.878 kb on - strand at 414.878 kb on - strand at 414.970 kb on + strand at 414.970 kb on + strand at 414.970 kb on + strand at 414.970 kb on + strand at 414.970 kb on + strand at 414.970 kb on + strand at 414.971 kb on - strand at 414.971 kb on - strand at 414.971 kb on - strand at 414.989 kb on - strand at 415.015 kb on + strand, within LRK53_RS01775 at 415.066 kb on + strand, within LRK53_RS01775 at 415.105 kb on + strand, within LRK53_RS01775 at 415.105 kb on + strand, within LRK53_RS01775 at 415.105 kb on + strand, within LRK53_RS01775 at 415.105 kb on + strand, within LRK53_RS01775 at 415.105 kb on + strand, within LRK53_RS01775 at 415.106 kb on - strand, within LRK53_RS01775 at 415.106 kb on - strand, within LRK53_RS01775 at 415.106 kb on - strand, within LRK53_RS01775 at 415.106 kb on - strand, within LRK53_RS01775 at 415.106 kb on - strand, within LRK53_RS01775 at 415.106 kb on - strand, within LRK53_RS01775 at 415.106 kb on - strand, within LRK53_RS01775 at 415.106 kb on - strand, within LRK53_RS01775 at 415.162 kb on + strand, within LRK53_RS01775 at 415.162 kb on + strand, within LRK53_RS01775 at 415.162 kb on + strand, within LRK53_RS01775 at 415.162 kb on + strand, within LRK53_RS01775 at 415.162 kb on + strand, within LRK53_RS01775 at 415.162 kb on + strand, within LRK53_RS01775 at 415.162 kb on + strand, within LRK53_RS01775 at 415.162 kb on + strand, within LRK53_RS01775 at 415.163 kb on - strand, within LRK53_RS01775 at 415.163 kb on - strand, within LRK53_RS01775 at 415.163 kb on - strand, within LRK53_RS01775 at 415.163 kb on - strand, within LRK53_RS01775 at 415.163 kb on - strand, within LRK53_RS01775 at 415.163 kb on - strand, within LRK53_RS01775 at 415.163 kb on - strand, within LRK53_RS01775 at 415.163 kb on - strand, within LRK53_RS01775 at 415.163 kb on - strand, within LRK53_RS01775 at 415.333 kb on + strand, within LRK53_RS01775 at 415.367 kb on - strand, within LRK53_RS01775 at 415.367 kb on - strand, within LRK53_RS01775 at 415.367 kb on - strand, within LRK53_RS01775 at 415.367 kb on - strand, within LRK53_RS01775 at 415.367 kb on - strand, within LRK53_RS01775 at 415.411 kb on + strand, within LRK53_RS01775 at 415.411 kb on + strand, within LRK53_RS01775 at 415.411 kb on + strand, within LRK53_RS01775 at 415.411 kb on + strand, within LRK53_RS01775 at 415.411 kb on + strand, within LRK53_RS01775 at 415.411 kb on + strand, within LRK53_RS01775 at 415.411 kb on + strand, within LRK53_RS01775 at 415.411 kb on + strand, within LRK53_RS01775 at 415.412 kb on - strand, within LRK53_RS01775 at 415.414 kb on + strand, within LRK53_RS01775 at 415.414 kb on + strand, within LRK53_RS01775 at 415.414 kb on + strand, within LRK53_RS01775 at 415.415 kb on - strand, within LRK53_RS01775 at 415.415 kb on - strand, within LRK53_RS01775 at 415.415 kb on - strand, within LRK53_RS01775 at 415.415 kb on - strand, within LRK53_RS01775 at 415.415 kb on - strand, within LRK53_RS01775 at 415.415 kb on - strand, within LRK53_RS01775 at 415.450 kb on + strand, within LRK53_RS01775 at 415.450 kb on + strand, within LRK53_RS01775 at 415.450 kb on + strand, within LRK53_RS01775 at 415.450 kb on + strand, within LRK53_RS01775 at 415.450 kb on + strand, within LRK53_RS01775 at 415.450 kb on + strand, within LRK53_RS01775 at 415.450 kb on + strand, within LRK53_RS01775 at 415.450 kb on + strand, within LRK53_RS01775 at 415.451 kb on - strand, within LRK53_RS01775 at 415.451 kb on - strand, within LRK53_RS01775 at 415.451 kb on - strand, within LRK53_RS01775 at 415.451 kb on - strand, within LRK53_RS01775 at 415.451 kb on - strand, within LRK53_RS01775 at 415.451 kb on - strand, within LRK53_RS01775 at 415.451 kb on - strand, within LRK53_RS01775 at 415.461 kb on - strand, within LRK53_RS01775 at 415.485 kb on - strand, within LRK53_RS01775 at 415.485 kb on - strand, within LRK53_RS01775 at 415.485 kb on - strand, within LRK53_RS01775 at 415.485 kb on - strand, within LRK53_RS01775 at 415.485 kb on - strand, within LRK53_RS01775 at 415.507 kb on + strand, within LRK53_RS01775 at 415.508 kb on - strand, within LRK53_RS01775 at 415.672 kb on + strand, within LRK53_RS01775 at 415.672 kb on + strand, within LRK53_RS01775 at 415.672 kb on + strand, within LRK53_RS01775 at 415.672 kb on + strand, within LRK53_RS01775
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 412,939 + LRK53_RS01760 0.73 -0.5 412,939 + LRK53_RS01760 0.73 -0.9 412,939 + LRK53_RS01760 0.73 -0.5 412,939 + LRK53_RS01760 0.73 -2.1 412,939 + LRK53_RS01760 0.73 +1.0 412,954 + LRK53_RS01760 0.75 -0.7 412,955 - LRK53_RS01760 0.75 +0.3 412,955 - LRK53_RS01760 0.75 -2.5 413,152 + -2.2 413,152 + +0.4 413,152 + +1.6 413,152 + -1.6 413,152 + -0.1 413,152 + +0.3 413,152 + -0.7 413,152 + +1.0 413,152 + +1.5 413,152 + -0.1 413,152 + -0.0 413,152 + -2.1 413,152 + -1.7 413,152 + +0.8 413,152 + +0.3 413,152 + -1.6 413,153 - -0.1 413,153 - -0.7 413,153 - -0.8 413,153 - +2.3 413,153 - -0.9 413,153 - +0.1 413,153 - -1.3 413,153 - -0.8 413,153 - -0.0 413,153 - -1.4 413,153 - -0.3 413,153 - +2.0 413,153 - -0.8 413,153 - -0.1 413,153 - +1.1 413,153 - +0.0 413,153 - +1.1 413,153 - +0.2 413,153 - -1.3 413,153 - +1.7 413,153 - +0.6 413,153 - +0.4 413,153 - -1.8 413,153 - +1.0 413,153 - -0.1 413,256 + -0.0 413,256 + -1.0 413,256 + -0.7 413,256 + +0.2 413,256 + -1.1 413,256 + -0.8 413,256 + -0.6 413,256 + +0.6 413,256 + +0.1 413,256 + -0.8 413,256 + -0.2 413,256 + -1.9 413,256 + +0.7 413,256 + +0.9 413,256 + -0.9 413,256 + -0.3 413,256 + -0.8 413,256 + +0.4 413,256 + +0.1 413,256 + +0.4 413,256 + -0.6 413,256 + +1.7 413,256 + -0.8 413,256 + +2.0 413,256 + -1.4 413,256 + -1.7 413,256 + -1.2 413,256 + +1.0 413,256 + +0.9 413,257 - -0.4 413,257 - -0.2 413,257 - -0.8 413,257 - +0.8 413,257 - -0.4 413,257 - +0.4 413,257 - -1.1 413,257 - -1.0 413,257 - -0.5 413,257 - +1.3 413,257 - -1.9 413,257 - -0.3 413,257 - -1.2 413,257 - -2.1 413,257 - -0.2 413,257 - +0.1 413,257 - +1.1 413,257 - -1.9 413,860 + -0.1 413,860 + -0.0 413,860 + -1.2 413,861 - -1.5 414,036 + LRK53_RS01770 0.15 +0.1 414,036 + LRK53_RS01770 0.15 -0.3 414,036 + LRK53_RS01770 0.15 -0.0 414,036 + LRK53_RS01770 0.15 +0.9 414,037 - LRK53_RS01770 0.15 +0.5 414,037 - LRK53_RS01770 0.15 +0.5 414,037 - LRK53_RS01770 0.15 -0.1 414,037 - LRK53_RS01770 0.15 +1.4 414,120 + LRK53_RS01770 0.24 +0.4 414,120 + LRK53_RS01770 0.24 +0.7 414,120 + LRK53_RS01770 0.24 -1.1 414,120 + LRK53_RS01770 0.24 -2.3 414,120 + LRK53_RS01770 0.24 -0.6 414,120 + LRK53_RS01770 0.24 -0.3 414,120 + LRK53_RS01770 0.24 +1.2 414,120 + LRK53_RS01770 0.24 -0.5 414,121 - LRK53_RS01770 0.24 +0.4 414,121 - LRK53_RS01770 0.24 +0.2 414,121 - LRK53_RS01770 0.24 -1.0 414,121 - LRK53_RS01770 0.24 -2.9 414,213 + LRK53_RS01770 0.35 -1.1 414,214 - LRK53_RS01770 0.35 -0.2 414,214 - LRK53_RS01770 0.35 +0.1 414,214 - LRK53_RS01770 0.35 -0.5 414,214 - LRK53_RS01770 0.35 +1.1 414,214 - LRK53_RS01770 0.35 +0.1 414,231 + LRK53_RS01770 0.37 +1.1 414,231 + LRK53_RS01770 0.37 -0.8 414,231 + LRK53_RS01770 0.37 +1.2 414,231 + LRK53_RS01770 0.37 -1.2 414,231 + LRK53_RS01770 0.37 -0.2 414,231 + LRK53_RS01770 0.37 +2.6 414,231 + LRK53_RS01770 0.37 +0.3 414,231 + LRK53_RS01770 0.37 -1.0 414,232 - LRK53_RS01770 0.37 -1.3 414,232 - LRK53_RS01770 0.37 +3.2 414,232 - LRK53_RS01770 0.37 -1.9 414,232 - LRK53_RS01770 0.37 -0.1 414,232 - LRK53_RS01770 0.37 +1.2 414,232 - LRK53_RS01770 0.37 +0.8 414,657 + LRK53_RS01770 0.87 +0.0 414,657 + LRK53_RS01770 0.87 +1.0 414,658 - LRK53_RS01770 0.87 -2.4 414,778 + +1.4 414,778 + -0.4 414,778 + +0.7 414,778 + -1.6 414,779 - +0.1 414,779 - -2.0 414,779 - -0.8 414,805 + +0.1 414,805 + -0.9 414,805 + -0.6 414,805 + +0.1 414,805 + -1.1 414,805 + -0.6 414,806 - -0.3 414,877 + +1.0 414,877 + -1.1 414,878 - -1.8 414,878 - -0.3 414,878 - -0.3 414,878 - +0.1 414,878 - +0.1 414,970 + +1.1 414,970 + +1.9 414,970 + -0.1 414,970 + -0.1 414,970 + -1.2 414,970 + -1.3 414,971 - -0.3 414,971 - -1.1 414,971 - +0.5 414,989 - +0.5 415,015 + LRK53_RS01775 0.11 -0.1 415,066 + LRK53_RS01775 0.14 +0.1 415,105 + LRK53_RS01775 0.15 -0.5 415,105 + LRK53_RS01775 0.15 -2.3 415,105 + LRK53_RS01775 0.15 +0.8 415,105 + LRK53_RS01775 0.15 -0.1 415,105 + LRK53_RS01775 0.15 -1.6 415,106 - LRK53_RS01775 0.15 +0.6 415,106 - LRK53_RS01775 0.15 +1.1 415,106 - LRK53_RS01775 0.15 +2.7 415,106 - LRK53_RS01775 0.15 -3.4 415,106 - LRK53_RS01775 0.15 +0.8 415,106 - LRK53_RS01775 0.15 -1.2 415,106 - LRK53_RS01775 0.15 -1.3 415,106 - LRK53_RS01775 0.15 -3.3 415,162 + LRK53_RS01775 0.18 -0.4 415,162 + LRK53_RS01775 0.18 +1.9 415,162 + LRK53_RS01775 0.18 -0.8 415,162 + LRK53_RS01775 0.18 +1.1 415,162 + LRK53_RS01775 0.18 -0.5 415,162 + LRK53_RS01775 0.18 -0.0 415,162 + LRK53_RS01775 0.18 -0.7 415,162 + LRK53_RS01775 0.18 -1.7 415,163 - LRK53_RS01775 0.18 -0.3 415,163 - LRK53_RS01775 0.18 +0.1 415,163 - LRK53_RS01775 0.18 -0.3 415,163 - LRK53_RS01775 0.18 -0.3 415,163 - LRK53_RS01775 0.18 -1.0 415,163 - LRK53_RS01775 0.18 -2.0 415,163 - LRK53_RS01775 0.18 +1.2 415,163 - LRK53_RS01775 0.18 -1.4 415,163 - LRK53_RS01775 0.18 -1.1 415,333 + LRK53_RS01775 0.26 -0.2 415,367 - LRK53_RS01775 0.28 +0.2 415,367 - LRK53_RS01775 0.28 +1.5 415,367 - LRK53_RS01775 0.28 -0.8 415,367 - LRK53_RS01775 0.28 +1.3 415,367 - LRK53_RS01775 0.28 +0.4 415,411 + LRK53_RS01775 0.30 -1.9 415,411 + LRK53_RS01775 0.30 -0.6 415,411 + LRK53_RS01775 0.30 +0.4 415,411 + LRK53_RS01775 0.30 +1.1 415,411 + LRK53_RS01775 0.30 -2.3 415,411 + LRK53_RS01775 0.30 +2.9 415,411 + LRK53_RS01775 0.30 +0.1 415,411 + LRK53_RS01775 0.30 -0.1 415,412 - LRK53_RS01775 0.30 -1.9 415,414 + LRK53_RS01775 0.30 +0.0 415,414 + LRK53_RS01775 0.30 +0.2 415,414 + LRK53_RS01775 0.30 -0.0 415,415 - LRK53_RS01775 0.30 -0.8 415,415 - LRK53_RS01775 0.30 +0.1 415,415 - LRK53_RS01775 0.30 +0.9 415,415 - LRK53_RS01775 0.30 -0.3 415,415 - LRK53_RS01775 0.30 -0.8 415,415 - LRK53_RS01775 0.30 +1.9 415,450 + LRK53_RS01775 0.32 -0.5 415,450 + LRK53_RS01775 0.32 +0.0 415,450 + LRK53_RS01775 0.32 +0.6 415,450 + LRK53_RS01775 0.32 -0.1 415,450 + LRK53_RS01775 0.32 +0.4 415,450 + LRK53_RS01775 0.32 +1.0 415,450 + LRK53_RS01775 0.32 -0.5 415,450 + LRK53_RS01775 0.32 -1.9 415,451 - LRK53_RS01775 0.32 -0.1 415,451 - LRK53_RS01775 0.32 +0.7 415,451 - LRK53_RS01775 0.32 +0.2 415,451 - LRK53_RS01775 0.32 -0.3 415,451 - LRK53_RS01775 0.32 -1.8 415,451 - LRK53_RS01775 0.32 -0.2 415,451 - LRK53_RS01775 0.32 +2.2 415,461 - LRK53_RS01775 0.32 -0.4 415,485 - LRK53_RS01775 0.33 -1.3 415,485 - LRK53_RS01775 0.33 -1.0 415,485 - LRK53_RS01775 0.33 +1.5 415,485 - LRK53_RS01775 0.33 -0.9 415,485 - LRK53_RS01775 0.33 -1.7 415,507 + LRK53_RS01775 0.34 -0.6 415,508 - LRK53_RS01775 0.34 -1.3 415,672 + LRK53_RS01775 0.42 -0.7 415,672 + LRK53_RS01775 0.42 -1.6 415,672 + LRK53_RS01775 0.42 -0.1 415,672 + LRK53_RS01775 0.42 +0.1
Or see this region's nucleotide sequence