Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS01615 and LRK53_RS01620 are separated by 75 nucleotides LRK53_RS01620 and LRK53_RS01625 are separated by 133 nucleotides LRK53_RS01625 and LRK53_RS01630 overlap by 1 nucleotides
LRK53_RS01615: LRK53_RS01615 - acetyl-CoA carboxylase biotin carboxyl carrier protein, at 382,400 to 382,858
_RS01615
LRK53_RS01620: LRK53_RS01620 - type II 3-dehydroquinate dehydratase, at 382,934 to 383,386
_RS01620
LRK53_RS01625: LRK53_RS01625 - TlpA family protein disulfide reductase, at 383,520 to 384,059
_RS01625
LRK53_RS01630: LRK53_RS01630 - protein-disulfide reductase DsbD, at 384,059 to 386,248
_RS01630
Position (kb) 383
384
385 Strain fitness (log2 ratio) -2
-1
0
1
2 at 383.041 kb on - strand, within LRK53_RS01620 at 383.041 kb on - strand, within LRK53_RS01620 at 383.041 kb on - strand, within LRK53_RS01620 at 383.041 kb on - strand, within LRK53_RS01620 at 383.041 kb on - strand, within LRK53_RS01620 at 383.041 kb on - strand, within LRK53_RS01620 at 383.041 kb on - strand, within LRK53_RS01620 at 383.041 kb on - strand, within LRK53_RS01620 at 383.041 kb on - strand, within LRK53_RS01620 at 383.041 kb on - strand, within LRK53_RS01620 at 383.041 kb on - strand, within LRK53_RS01620 at 383.320 kb on - strand, within LRK53_RS01620 at 383.320 kb on - strand, within LRK53_RS01620 at 383.320 kb on - strand, within LRK53_RS01620 at 383.320 kb on - strand, within LRK53_RS01620 at 383.320 kb on - strand, within LRK53_RS01620 at 383.345 kb on + strand at 383.345 kb on + strand at 383.345 kb on + strand at 383.345 kb on + strand at 383.345 kb on + strand at 383.345 kb on + strand at 383.345 kb on + strand at 383.345 kb on + strand at 383.345 kb on + strand at 383.345 kb on + strand at 383.346 kb on - strand at 383.346 kb on - strand at 383.346 kb on - strand at 383.346 kb on - strand at 383.346 kb on - strand at 383.346 kb on - strand at 383.446 kb on - strand at 383.446 kb on - strand at 383.516 kb on + strand at 383.517 kb on - strand at 383.517 kb on - strand at 383.517 kb on - strand at 383.517 kb on - strand at 383.624 kb on + strand, within LRK53_RS01625 at 383.625 kb on - strand, within LRK53_RS01625 at 383.625 kb on - strand, within LRK53_RS01625 at 383.625 kb on - strand, within LRK53_RS01625 at 383.625 kb on - strand, within LRK53_RS01625 at 383.626 kb on + strand, within LRK53_RS01625 at 383.626 kb on + strand, within LRK53_RS01625 at 383.645 kb on + strand, within LRK53_RS01625 at 383.645 kb on + strand, within LRK53_RS01625 at 383.646 kb on - strand, within LRK53_RS01625 at 383.701 kb on + strand, within LRK53_RS01625 at 383.701 kb on + strand, within LRK53_RS01625
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 383,041 - LRK53_RS01620 0.24 -2.2 383,041 - LRK53_RS01620 0.24 -0.3 383,041 - LRK53_RS01620 0.24 -1.7 383,041 - LRK53_RS01620 0.24 -1.6 383,041 - LRK53_RS01620 0.24 -0.3 383,041 - LRK53_RS01620 0.24 -0.5 383,041 - LRK53_RS01620 0.24 -0.4 383,041 - LRK53_RS01620 0.24 +0.1 383,041 - LRK53_RS01620 0.24 -0.8 383,041 - LRK53_RS01620 0.24 -0.2 383,041 - LRK53_RS01620 0.24 +1.0 383,320 - LRK53_RS01620 0.85 +1.8 383,320 - LRK53_RS01620 0.85 -1.2 383,320 - LRK53_RS01620 0.85 -1.0 383,320 - LRK53_RS01620 0.85 -0.4 383,320 - LRK53_RS01620 0.85 -0.5 383,345 + +1.5 383,345 + -1.8 383,345 + -1.4 383,345 + -0.7 383,345 + -0.3 383,345 + -0.1 383,345 + -0.8 383,345 + -2.7 383,345 + +0.1 383,345 + +1.1 383,346 - -1.0 383,346 - -0.3 383,346 - +0.0 383,346 - -0.3 383,346 - +1.0 383,346 - -0.9 383,446 - -2.2 383,446 - -0.9 383,516 + -1.0 383,517 - -1.4 383,517 - -1.5 383,517 - -1.5 383,517 - -0.7 383,624 + LRK53_RS01625 0.19 -0.7 383,625 - LRK53_RS01625 0.19 +1.7 383,625 - LRK53_RS01625 0.19 +0.2 383,625 - LRK53_RS01625 0.19 -1.1 383,625 - LRK53_RS01625 0.19 +0.8 383,626 + LRK53_RS01625 0.20 +0.1 383,626 + LRK53_RS01625 0.20 -0.3 383,645 + LRK53_RS01625 0.23 -0.9 383,645 + LRK53_RS01625 0.23 +0.2 383,646 - LRK53_RS01625 0.23 +0.9 383,701 + LRK53_RS01625 0.34 -0.1 383,701 + LRK53_RS01625 0.34 +1.7
Or see this region's nucleotide sequence