Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS01610

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS01605 and LRK53_RS01610 are separated by 52 nucleotidesLRK53_RS01610 and LRK53_RS01615 are separated by 77 nucleotidesLRK53_RS01615 and LRK53_RS01620 are separated by 75 nucleotides LRK53_RS01605: LRK53_RS01605 - acetyl-CoA carboxylase biotin carboxylase subunit, at 380,582 to 381,949 _RS01605 LRK53_RS01610: LRK53_RS01610 - four helix bundle protein, at 382,002 to 382,322 _RS01610 LRK53_RS01615: LRK53_RS01615 - acetyl-CoA carboxylase biotin carboxyl carrier protein, at 382,400 to 382,858 _RS01615 LRK53_RS01620: LRK53_RS01620 - type II 3-dehydroquinate dehydratase, at 382,934 to 383,386 _RS01620 Position (kb) 382 383Strain fitness (log2 ratio) -2 -1 0 1 2 3at 381.980 kb on - strandat 381.980 kb on - strandat 382.034 kb on + strand, within LRK53_RS01610at 382.035 kb on - strand, within LRK53_RS01610at 382.077 kb on + strand, within LRK53_RS01610at 382.078 kb on - strand, within LRK53_RS01610at 382.078 kb on - strand, within LRK53_RS01610at 382.078 kb on - strand, within LRK53_RS01610at 382.078 kb on - strand, within LRK53_RS01610at 382.078 kb on - strand, within LRK53_RS01610at 382.100 kb on - strand, within LRK53_RS01610at 382.100 kb on - strand, within LRK53_RS01610at 382.100 kb on - strand, within LRK53_RS01610at 382.100 kb on - strand, within LRK53_RS01610at 382.100 kb on - strand, within LRK53_RS01610at 382.100 kb on - strand, within LRK53_RS01610at 382.100 kb on - strand, within LRK53_RS01610at 382.100 kb on - strand, within LRK53_RS01610at 382.100 kb on - strand, within LRK53_RS01610at 382.100 kb on - strand, within LRK53_RS01610at 382.100 kb on - strand, within LRK53_RS01610at 382.100 kb on - strand, within LRK53_RS01610at 382.100 kb on - strand, within LRK53_RS01610at 382.100 kb on - strand, within LRK53_RS01610at 382.100 kb on - strand, within LRK53_RS01610at 382.100 kb on - strand, within LRK53_RS01610at 382.178 kb on - strand, within LRK53_RS01610at 382.178 kb on - strand, within LRK53_RS01610at 382.178 kb on - strand, within LRK53_RS01610at 382.178 kb on - strand, within LRK53_RS01610at 382.178 kb on - strand, within LRK53_RS01610at 382.178 kb on - strand, within LRK53_RS01610at 382.178 kb on - strand, within LRK53_RS01610at 382.178 kb on - strand, within LRK53_RS01610at 382.178 kb on - strand, within LRK53_RS01610at 382.263 kb on - strand, within LRK53_RS01610at 382.263 kb on - strand, within LRK53_RS01610at 382.263 kb on - strand, within LRK53_RS01610at 382.263 kb on - strand, within LRK53_RS01610at 382.301 kb on - strandat 382.301 kb on - strandat 382.301 kb on - strandat 383.041 kb on - strand, within LRK53_RS01620at 383.041 kb on - strand, within LRK53_RS01620at 383.041 kb on - strand, within LRK53_RS01620at 383.041 kb on - strand, within LRK53_RS01620at 383.041 kb on - strand, within LRK53_RS01620at 383.041 kb on - strand, within LRK53_RS01620at 383.041 kb on - strand, within LRK53_RS01620at 383.041 kb on - strand, within LRK53_RS01620at 383.041 kb on - strand, within LRK53_RS01620at 383.041 kb on - strand, within LRK53_RS01620at 383.041 kb on - strand, within LRK53_RS01620at 383.320 kb on - strand, within LRK53_RS01620at 383.320 kb on - strand, within LRK53_RS01620at 383.320 kb on - strand, within LRK53_RS01620at 383.320 kb on - strand, within LRK53_RS01620at 383.320 kb on - strand, within LRK53_RS01620

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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381,980 - +0.4
381,980 - +0.8
382,034 + LRK53_RS01610 0.10 -0.1
382,035 - LRK53_RS01610 0.10 -0.8
382,077 + LRK53_RS01610 0.23 -0.8
382,078 - LRK53_RS01610 0.24 -0.3
382,078 - LRK53_RS01610 0.24 -0.8
382,078 - LRK53_RS01610 0.24 -0.3
382,078 - LRK53_RS01610 0.24 +0.1
382,078 - LRK53_RS01610 0.24 +0.0
382,100 - LRK53_RS01610 0.31 +0.2
382,100 - LRK53_RS01610 0.31 -0.7
382,100 - LRK53_RS01610 0.31 -1.4
382,100 - LRK53_RS01610 0.31 +0.7
382,100 - LRK53_RS01610 0.31 +0.8
382,100 - LRK53_RS01610 0.31 +1.5
382,100 - LRK53_RS01610 0.31 -1.0
382,100 - LRK53_RS01610 0.31 +0.4
382,100 - LRK53_RS01610 0.31 -0.3
382,100 - LRK53_RS01610 0.31 -1.1
382,100 - LRK53_RS01610 0.31 -0.4
382,100 - LRK53_RS01610 0.31 +3.1
382,100 - LRK53_RS01610 0.31 +1.1
382,100 - LRK53_RS01610 0.31 +0.7
382,100 - LRK53_RS01610 0.31 +1.3
382,100 - LRK53_RS01610 0.31 -0.5
382,178 - LRK53_RS01610 0.55 +0.2
382,178 - LRK53_RS01610 0.55 +0.0
382,178 - LRK53_RS01610 0.55 -0.2
382,178 - LRK53_RS01610 0.55 +0.2
382,178 - LRK53_RS01610 0.55 +0.8
382,178 - LRK53_RS01610 0.55 -0.4
382,178 - LRK53_RS01610 0.55 +1.1
382,178 - LRK53_RS01610 0.55 -0.3
382,178 - LRK53_RS01610 0.55 -1.9
382,263 - LRK53_RS01610 0.81 +0.6
382,263 - LRK53_RS01610 0.81 -2.4
382,263 - LRK53_RS01610 0.81 -0.1
382,263 - LRK53_RS01610 0.81 -2.1
382,301 - -0.2
382,301 - -1.1
382,301 - +0.4
383,041 - LRK53_RS01620 0.24 -2.2
383,041 - LRK53_RS01620 0.24 -0.3
383,041 - LRK53_RS01620 0.24 -1.7
383,041 - LRK53_RS01620 0.24 -1.6
383,041 - LRK53_RS01620 0.24 -0.3
383,041 - LRK53_RS01620 0.24 -0.5
383,041 - LRK53_RS01620 0.24 -0.4
383,041 - LRK53_RS01620 0.24 +0.1
383,041 - LRK53_RS01620 0.24 -0.8
383,041 - LRK53_RS01620 0.24 -0.2
383,041 - LRK53_RS01620 0.24 +1.0
383,320 - LRK53_RS01620 0.85 +1.8
383,320 - LRK53_RS01620 0.85 -1.2
383,320 - LRK53_RS01620 0.85 -1.0
383,320 - LRK53_RS01620 0.85 -0.4
383,320 - LRK53_RS01620 0.85 -0.5

Or see this region's nucleotide sequence