Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS01560 and LRK53_RS01565 are separated by 76 nucleotides LRK53_RS01565 and LRK53_RS01570 are separated by 484 nucleotides
LRK53_RS01560: LRK53_RS01560 - UvrD-helicase domain-containing protein, at 368,923 to 371,238
_RS01560
LRK53_RS01565: LRK53_RS01565 - hypothetical protein, at 371,315 to 371,533
_RS01565
LRK53_RS01570: LRK53_RS01570 - DNA polymerase I, at 372,018 to 374,795
_RS01570
Position (kb)
371
372 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 371.250 kb on + strand at 371.250 kb on + strand at 371.250 kb on + strand at 371.250 kb on + strand at 371.251 kb on - strand at 371.251 kb on - strand at 371.457 kb on + strand, within LRK53_RS01565 at 371.457 kb on + strand, within LRK53_RS01565 at 371.458 kb on - strand, within LRK53_RS01565 at 371.458 kb on - strand, within LRK53_RS01565 at 371.458 kb on - strand, within LRK53_RS01565 at 371.458 kb on - strand, within LRK53_RS01565 at 371.458 kb on - strand, within LRK53_RS01565 at 371.565 kb on + strand at 371.565 kb on + strand at 371.566 kb on - strand at 371.566 kb on - strand at 371.566 kb on - strand at 371.761 kb on + strand at 371.762 kb on - strand at 371.762 kb on - strand at 371.762 kb on - strand at 371.787 kb on + strand at 371.824 kb on + strand at 371.824 kb on + strand at 371.824 kb on + strand at 371.824 kb on + strand at 371.824 kb on + strand at 371.824 kb on + strand at 371.824 kb on + strand at 371.824 kb on + strand at 371.824 kb on + strand at 371.824 kb on + strand at 371.825 kb on - strand at 371.825 kb on - strand at 371.825 kb on - strand at 371.825 kb on - strand at 371.825 kb on - strand at 371.900 kb on + strand at 371.900 kb on + strand at 371.900 kb on + strand at 371.901 kb on - strand at 371.901 kb on - strand at 371.901 kb on - strand at 371.972 kb on + strand at 372.442 kb on + strand, within LRK53_RS01570 at 372.442 kb on + strand, within LRK53_RS01570
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 371,250 + -0.2 371,250 + -1.0 371,250 + +1.0 371,250 + -0.3 371,251 - -0.2 371,251 - -1.4 371,457 + LRK53_RS01565 0.65 -1.3 371,457 + LRK53_RS01565 0.65 -0.7 371,458 - LRK53_RS01565 0.65 -0.8 371,458 - LRK53_RS01565 0.65 -0.7 371,458 - LRK53_RS01565 0.65 -0.7 371,458 - LRK53_RS01565 0.65 -0.1 371,458 - LRK53_RS01565 0.65 -0.2 371,565 + +0.5 371,565 + -2.5 371,566 - -2.4 371,566 - -3.0 371,566 - +0.3 371,761 + -1.3 371,762 - +1.5 371,762 - -1.1 371,762 - -0.5 371,787 + -1.3 371,824 + +0.8 371,824 + -0.5 371,824 + +0.2 371,824 + +0.5 371,824 + -0.1 371,824 + +0.2 371,824 + -0.2 371,824 + -0.3 371,824 + -0.3 371,824 + +0.5 371,825 - -0.1 371,825 - -0.3 371,825 - +0.4 371,825 - +1.0 371,825 - +0.1 371,900 + +0.4 371,900 + -1.1 371,900 + -3.1 371,901 - +2.2 371,901 - -0.7 371,901 - +0.6 371,972 + +1.1 372,442 + LRK53_RS01570 0.15 +2.2 372,442 + LRK53_RS01570 0.15 -0.1
Or see this region's nucleotide sequence