Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS01565

Experiment: Biofilm; Day2; SGW; pH7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS01560 and LRK53_RS01565 are separated by 76 nucleotidesLRK53_RS01565 and LRK53_RS01570 are separated by 484 nucleotides LRK53_RS01560: LRK53_RS01560 - UvrD-helicase domain-containing protein, at 368,923 to 371,238 _RS01560 LRK53_RS01565: LRK53_RS01565 - hypothetical protein, at 371,315 to 371,533 _RS01565 LRK53_RS01570: LRK53_RS01570 - DNA polymerase I, at 372,018 to 374,795 _RS01570 Position (kb) 371 372Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 371.250 kb on + strandat 371.250 kb on + strandat 371.250 kb on + strandat 371.250 kb on + strandat 371.251 kb on - strandat 371.251 kb on - strandat 371.457 kb on + strand, within LRK53_RS01565at 371.457 kb on + strand, within LRK53_RS01565at 371.458 kb on - strand, within LRK53_RS01565at 371.458 kb on - strand, within LRK53_RS01565at 371.458 kb on - strand, within LRK53_RS01565at 371.458 kb on - strand, within LRK53_RS01565at 371.458 kb on - strand, within LRK53_RS01565at 371.565 kb on + strandat 371.565 kb on + strandat 371.566 kb on - strandat 371.566 kb on - strandat 371.566 kb on - strandat 371.761 kb on + strandat 371.762 kb on - strandat 371.762 kb on - strandat 371.762 kb on - strandat 371.787 kb on + strandat 371.824 kb on + strandat 371.824 kb on + strandat 371.824 kb on + strandat 371.824 kb on + strandat 371.824 kb on + strandat 371.824 kb on + strandat 371.824 kb on + strandat 371.824 kb on + strandat 371.824 kb on + strandat 371.824 kb on + strandat 371.825 kb on - strandat 371.825 kb on - strandat 371.825 kb on - strandat 371.825 kb on - strandat 371.825 kb on - strandat 371.900 kb on + strandat 371.900 kb on + strandat 371.900 kb on + strandat 371.901 kb on - strandat 371.901 kb on - strandat 371.901 kb on - strandat 371.972 kb on + strandat 372.442 kb on + strand, within LRK53_RS01570at 372.442 kb on + strand, within LRK53_RS01570

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
remove
371,250 + -0.2
371,250 + -1.0
371,250 + +1.0
371,250 + -0.3
371,251 - -0.2
371,251 - -1.4
371,457 + LRK53_RS01565 0.65 -1.3
371,457 + LRK53_RS01565 0.65 -0.7
371,458 - LRK53_RS01565 0.65 -0.8
371,458 - LRK53_RS01565 0.65 -0.7
371,458 - LRK53_RS01565 0.65 -0.7
371,458 - LRK53_RS01565 0.65 -0.1
371,458 - LRK53_RS01565 0.65 -0.2
371,565 + +0.5
371,565 + -2.5
371,566 - -2.4
371,566 - -3.0
371,566 - +0.3
371,761 + -1.3
371,762 - +1.5
371,762 - -1.1
371,762 - -0.5
371,787 + -1.3
371,824 + +0.8
371,824 + -0.5
371,824 + +0.2
371,824 + +0.5
371,824 + -0.1
371,824 + +0.2
371,824 + -0.2
371,824 + -0.3
371,824 + -0.3
371,824 + +0.5
371,825 - -0.1
371,825 - -0.3
371,825 - +0.4
371,825 - +1.0
371,825 - +0.1
371,900 + +0.4
371,900 + -1.1
371,900 + -3.1
371,901 - +2.2
371,901 - -0.7
371,901 - +0.6
371,972 + +1.1
372,442 + LRK53_RS01570 0.15 +2.2
372,442 + LRK53_RS01570 0.15 -0.1

Or see this region's nucleotide sequence