Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS01445

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS01435 and LRK53_RS01440 are separated by 11 nucleotidesLRK53_RS01440 and LRK53_RS01445 overlap by 4 nucleotidesLRK53_RS01445 and LRK53_RS01450 are separated by 119 nucleotidesLRK53_RS01450 and LRK53_RS01455 are separated by 2 nucleotides LRK53_RS01435: LRK53_RS01435 - alpha/beta hydrolase, at 345,340 to 346,893 _RS01435 LRK53_RS01440: LRK53_RS01440 - ATP-binding cassette domain-containing protein, at 346,905 to 347,639 _RS01440 LRK53_RS01445: LRK53_RS01445 - ABC transporter permease subunit, at 347,636 to 348,841 _RS01445 LRK53_RS01450: LRK53_RS01450 - EF-hand domain-containing protein, at 348,961 to 349,284 _RS01450 LRK53_RS01455: LRK53_RS01455 - GTP cyclohydrolase I FolE, at 349,287 to 349,892 _RS01455 Position (kb) 347 348 349Strain fitness (log2 ratio) -2 -1 0 1 2 3at 346.663 kb on + strand, within LRK53_RS01435at 346.663 kb on + strand, within LRK53_RS01435at 346.663 kb on + strand, within LRK53_RS01435at 346.664 kb on - strand, within LRK53_RS01435at 346.731 kb on - strand, within LRK53_RS01435at 346.891 kb on + strandat 347.046 kb on + strand, within LRK53_RS01440at 347.046 kb on + strand, within LRK53_RS01440at 347.046 kb on + strand, within LRK53_RS01440at 347.046 kb on + strand, within LRK53_RS01440at 347.046 kb on + strand, within LRK53_RS01440at 347.047 kb on - strand, within LRK53_RS01440at 347.160 kb on + strand, within LRK53_RS01440at 347.160 kb on + strand, within LRK53_RS01440at 347.194 kb on - strand, within LRK53_RS01440at 347.194 kb on - strand, within LRK53_RS01440at 347.194 kb on - strand, within LRK53_RS01440at 347.348 kb on - strand, within LRK53_RS01440at 347.537 kb on - strand, within LRK53_RS01440at 348.029 kb on + strand, within LRK53_RS01445at 348.029 kb on + strand, within LRK53_RS01445at 348.092 kb on + strand, within LRK53_RS01445at 348.228 kb on - strand, within LRK53_RS01445at 348.263 kb on + strand, within LRK53_RS01445at 348.263 kb on + strand, within LRK53_RS01445at 348.263 kb on + strand, within LRK53_RS01445at 348.264 kb on - strand, within LRK53_RS01445at 348.264 kb on - strand, within LRK53_RS01445at 348.264 kb on - strand, within LRK53_RS01445at 348.264 kb on - strand, within LRK53_RS01445at 348.264 kb on - strand, within LRK53_RS01445at 348.492 kb on - strand, within LRK53_RS01445at 348.587 kb on + strand, within LRK53_RS01445at 348.587 kb on + strand, within LRK53_RS01445at 348.587 kb on + strand, within LRK53_RS01445at 348.587 kb on + strand, within LRK53_RS01445at 348.587 kb on + strand, within LRK53_RS01445at 348.588 kb on - strand, within LRK53_RS01445at 348.588 kb on - strand, within LRK53_RS01445at 348.588 kb on - strand, within LRK53_RS01445at 348.588 kb on - strand, within LRK53_RS01445at 348.588 kb on - strand, within LRK53_RS01445at 348.588 kb on - strand, within LRK53_RS01445at 348.588 kb on - strand, within LRK53_RS01445at 348.668 kb on + strand, within LRK53_RS01445at 348.668 kb on + strand, within LRK53_RS01445at 348.668 kb on + strand, within LRK53_RS01445at 348.669 kb on - strand, within LRK53_RS01445at 348.669 kb on - strand, within LRK53_RS01445at 348.669 kb on - strand, within LRK53_RS01445at 348.669 kb on - strand, within LRK53_RS01445at 348.810 kb on - strandat 348.810 kb on - strandat 348.857 kb on - strandat 348.998 kb on + strand, within LRK53_RS01450at 348.999 kb on - strand, within LRK53_RS01450at 349.052 kb on + strand, within LRK53_RS01450at 349.052 kb on + strand, within LRK53_RS01450at 349.053 kb on - strand, within LRK53_RS01450at 349.053 kb on - strand, within LRK53_RS01450at 349.053 kb on - strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.163 kb on + strand, within LRK53_RS01450at 349.164 kb on - strand, within LRK53_RS01450at 349.164 kb on - strand, within LRK53_RS01450at 349.215 kb on - strand, within LRK53_RS01450

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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346,663 + LRK53_RS01435 0.85 -0.1
346,663 + LRK53_RS01435 0.85 -0.5
346,663 + LRK53_RS01435 0.85 -1.3
346,664 - LRK53_RS01435 0.85 +0.5
346,731 - LRK53_RS01435 0.90 -0.4
346,891 + +0.2
347,046 + LRK53_RS01440 0.19 -1.3
347,046 + LRK53_RS01440 0.19 +1.7
347,046 + LRK53_RS01440 0.19 -0.6
347,046 + LRK53_RS01440 0.19 -0.0
347,046 + LRK53_RS01440 0.19 -0.1
347,047 - LRK53_RS01440 0.19 -0.1
347,160 + LRK53_RS01440 0.35 -1.5
347,160 + LRK53_RS01440 0.35 -0.2
347,194 - LRK53_RS01440 0.39 +1.8
347,194 - LRK53_RS01440 0.39 -0.3
347,194 - LRK53_RS01440 0.39 -2.5
347,348 - LRK53_RS01440 0.60 -0.7
347,537 - LRK53_RS01440 0.86 -1.4
348,029 + LRK53_RS01445 0.33 -1.2
348,029 + LRK53_RS01445 0.33 +1.3
348,092 + LRK53_RS01445 0.38 -0.5
348,228 - LRK53_RS01445 0.49 -2.0
348,263 + LRK53_RS01445 0.52 -1.4
348,263 + LRK53_RS01445 0.52 +3.6
348,263 + LRK53_RS01445 0.52 +1.0
348,264 - LRK53_RS01445 0.52 -0.1
348,264 - LRK53_RS01445 0.52 -2.2
348,264 - LRK53_RS01445 0.52 -2.0
348,264 - LRK53_RS01445 0.52 -0.7
348,264 - LRK53_RS01445 0.52 -1.3
348,492 - LRK53_RS01445 0.71 +0.2
348,587 + LRK53_RS01445 0.79 -1.0
348,587 + LRK53_RS01445 0.79 -0.3
348,587 + LRK53_RS01445 0.79 +1.3
348,587 + LRK53_RS01445 0.79 -1.0
348,587 + LRK53_RS01445 0.79 +0.1
348,588 - LRK53_RS01445 0.79 -1.8
348,588 - LRK53_RS01445 0.79 -1.0
348,588 - LRK53_RS01445 0.79 +0.7
348,588 - LRK53_RS01445 0.79 +0.7
348,588 - LRK53_RS01445 0.79 -0.7
348,588 - LRK53_RS01445 0.79 -0.1
348,588 - LRK53_RS01445 0.79 -1.1
348,668 + LRK53_RS01445 0.86 -2.1
348,668 + LRK53_RS01445 0.86 -1.3
348,668 + LRK53_RS01445 0.86 -1.0
348,669 - LRK53_RS01445 0.86 +0.1
348,669 - LRK53_RS01445 0.86 +0.1
348,669 - LRK53_RS01445 0.86 +1.1
348,669 - LRK53_RS01445 0.86 -0.3
348,810 - +0.4
348,810 - +0.3
348,857 - -1.2
348,998 + LRK53_RS01450 0.11 +1.3
348,999 - LRK53_RS01450 0.12 +1.7
349,052 + LRK53_RS01450 0.28 -2.6
349,052 + LRK53_RS01450 0.28 +1.1
349,053 - LRK53_RS01450 0.28 -0.7
349,053 - LRK53_RS01450 0.28 -2.6
349,053 - LRK53_RS01450 0.28 -0.1
349,154 + LRK53_RS01450 0.60 -0.2
349,154 + LRK53_RS01450 0.60 +1.1
349,154 + LRK53_RS01450 0.60 -0.6
349,154 + LRK53_RS01450 0.60 +1.1
349,154 + LRK53_RS01450 0.60 +0.5
349,154 + LRK53_RS01450 0.60 -1.7
349,154 + LRK53_RS01450 0.60 +0.4
349,154 + LRK53_RS01450 0.60 -1.1
349,154 + LRK53_RS01450 0.60 -2.3
349,154 + LRK53_RS01450 0.60 +0.5
349,154 + LRK53_RS01450 0.60 -1.0
349,154 + LRK53_RS01450 0.60 -1.2
349,154 + LRK53_RS01450 0.60 -0.3
349,154 + LRK53_RS01450 0.60 -1.3
349,154 + LRK53_RS01450 0.60 +1.4
349,154 + LRK53_RS01450 0.60 +2.7
349,154 + LRK53_RS01450 0.60 +0.3
349,154 + LRK53_RS01450 0.60 -1.4
349,154 + LRK53_RS01450 0.60 -0.9
349,154 + LRK53_RS01450 0.60 -1.8
349,154 + LRK53_RS01450 0.60 -2.2
349,154 + LRK53_RS01450 0.60 +0.4
349,154 + LRK53_RS01450 0.60 -1.6
349,154 + LRK53_RS01450 0.60 -1.9
349,155 - LRK53_RS01450 0.60 -0.6
349,155 - LRK53_RS01450 0.60 -1.9
349,155 - LRK53_RS01450 0.60 -0.5
349,155 - LRK53_RS01450 0.60 +0.7
349,155 - LRK53_RS01450 0.60 -0.1
349,155 - LRK53_RS01450 0.60 +0.7
349,155 - LRK53_RS01450 0.60 +0.0
349,155 - LRK53_RS01450 0.60 -0.5
349,155 - LRK53_RS01450 0.60 +0.3
349,155 - LRK53_RS01450 0.60 -1.1
349,155 - LRK53_RS01450 0.60 -1.0
349,155 - LRK53_RS01450 0.60 +0.5
349,155 - LRK53_RS01450 0.60 +1.3
349,155 - LRK53_RS01450 0.60 -0.6
349,155 - LRK53_RS01450 0.60 +1.9
349,155 - LRK53_RS01450 0.60 +0.1
349,163 + LRK53_RS01450 0.62 -0.6
349,164 - LRK53_RS01450 0.63 +1.1
349,164 - LRK53_RS01450 0.63 -1.5
349,215 - LRK53_RS01450 0.78 +1.3

Or see this region's nucleotide sequence