Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS01185 and LRK53_RS01190 are separated by 56 nucleotides LRK53_RS01190 and LRK53_RS01195 overlap by 4 nucleotides LRK53_RS01195 and LRK53_RS01200 are separated by 53 nucleotides LRK53_RS01200 and LRK53_RS01205 are separated by 120 nucleotides
LRK53_RS01185: LRK53_RS01185 - GAF domain-containing protein, at 294,444 to 294,935
_RS01185
LRK53_RS01190: LRK53_RS01190 - hypothetical protein, at 294,992 to 295,183
_RS01190
LRK53_RS01195: LRK53_RS01195 - dethiobiotin synthase, at 295,180 to 295,857
_RS01195
LRK53_RS01200: LRK53_RS01200 - hypothetical protein, at 295,911 to 296,258
_RS01200
LRK53_RS01205: LRK53_RS01205 - peptidyl-dipeptidase Dcp, at 296,379 to 298,562
_RS01205
Position (kb) 295
296
297 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 294.911 kb on - strand at 294.911 kb on - strand at 294.911 kb on - strand at 294.911 kb on - strand at 294.911 kb on - strand at 294.911 kb on - strand at 294.961 kb on + strand at 294.961 kb on + strand at 294.961 kb on + strand at 294.962 kb on - strand at 294.962 kb on - strand at 294.964 kb on + strand at 294.964 kb on + strand at 294.964 kb on + strand at 294.964 kb on + strand at 294.964 kb on + strand at 294.964 kb on + strand at 294.964 kb on + strand at 294.965 kb on - strand at 294.965 kb on - strand at 294.965 kb on - strand at 294.965 kb on - strand at 294.965 kb on - strand at 294.965 kb on - strand at 295.118 kb on + strand, within LRK53_RS01190 at 295.118 kb on + strand, within LRK53_RS01190 at 295.118 kb on + strand, within LRK53_RS01190 at 295.118 kb on + strand, within LRK53_RS01190 at 295.118 kb on + strand, within LRK53_RS01190 at 295.118 kb on + strand, within LRK53_RS01190 at 295.118 kb on + strand, within LRK53_RS01190 at 295.118 kb on + strand, within LRK53_RS01190 at 295.118 kb on + strand, within LRK53_RS01190 at 295.118 kb on + strand, within LRK53_RS01190 at 295.119 kb on - strand, within LRK53_RS01190 at 295.119 kb on - strand, within LRK53_RS01190 at 295.119 kb on - strand, within LRK53_RS01190 at 295.119 kb on - strand, within LRK53_RS01190 at 295.119 kb on - strand, within LRK53_RS01190 at 295.119 kb on - strand, within LRK53_RS01190 at 295.119 kb on - strand, within LRK53_RS01190 at 295.384 kb on + strand, within LRK53_RS01195 at 295.826 kb on - strand at 295.926 kb on + strand at 295.926 kb on + strand at 295.926 kb on + strand at 295.927 kb on - strand at 295.927 kb on - strand at 295.927 kb on - strand at 295.927 kb on - strand at 295.927 kb on - strand at 295.927 kb on - strand at 295.927 kb on - strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 296.208 kb on + strand, within LRK53_RS01200 at 296.208 kb on + strand, within LRK53_RS01200 at 296.208 kb on + strand, within LRK53_RS01200 at 296.209 kb on - strand, within LRK53_RS01200 at 296.209 kb on - strand, within LRK53_RS01200 at 296.209 kb on - strand, within LRK53_RS01200 at 296.209 kb on - strand, within LRK53_RS01200 at 296.209 kb on - strand, within LRK53_RS01200 at 296.209 kb on - strand, within LRK53_RS01200 at 296.209 kb on - strand, within LRK53_RS01200 at 296.209 kb on - strand, within LRK53_RS01200 at 296.209 kb on - strand, within LRK53_RS01200 at 296.209 kb on - strand, within LRK53_RS01200 at 296.209 kb on - strand, within LRK53_RS01200 at 296.317 kb on + strand at 296.526 kb on + strand at 296.526 kb on + strand at 296.526 kb on + strand at 296.527 kb on - strand at 296.527 kb on - strand at 296.537 kb on + strand at 296.537 kb on + strand at 296.537 kb on + strand at 296.537 kb on + strand at 296.537 kb on + strand at 296.537 kb on + strand at 296.537 kb on + strand at 296.537 kb on + strand at 296.537 kb on + strand at 296.537 kb on + strand at 296.537 kb on + strand at 296.537 kb on + strand at 296.538 kb on - strand at 296.538 kb on - strand at 296.538 kb on - strand at 296.538 kb on - strand at 296.586 kb on + strand at 296.679 kb on + strand, within LRK53_RS01205 at 296.679 kb on + strand, within LRK53_RS01205 at 296.679 kb on + strand, within LRK53_RS01205 at 296.679 kb on + strand, within LRK53_RS01205 at 296.679 kb on + strand, within LRK53_RS01205 at 296.679 kb on + strand, within LRK53_RS01205 at 296.679 kb on + strand, within LRK53_RS01205 at 296.679 kb on + strand, within LRK53_RS01205 at 296.679 kb on + strand, within LRK53_RS01205 at 296.679 kb on + strand, within LRK53_RS01205 at 296.679 kb on + strand, within LRK53_RS01205 at 296.679 kb on + strand, within LRK53_RS01205 at 296.679 kb on + strand, within LRK53_RS01205 at 296.679 kb on + strand, within LRK53_RS01205 at 296.679 kb on + strand, within LRK53_RS01205 at 296.679 kb on + strand, within LRK53_RS01205 at 296.680 kb on - strand, within LRK53_RS01205 at 296.680 kb on - strand, within LRK53_RS01205 at 296.680 kb on - strand, within LRK53_RS01205 at 296.680 kb on - strand, within LRK53_RS01205 at 296.680 kb on - strand, within LRK53_RS01205 at 296.680 kb on - strand, within LRK53_RS01205 at 296.680 kb on - strand, within LRK53_RS01205 at 296.680 kb on - strand, within LRK53_RS01205 at 296.680 kb on - strand, within LRK53_RS01205 at 296.680 kb on - strand, within LRK53_RS01205 at 296.862 kb on + strand, within LRK53_RS01205 at 296.862 kb on + strand, within LRK53_RS01205 at 296.863 kb on - strand, within LRK53_RS01205 at 296.863 kb on - strand, within LRK53_RS01205 at 296.863 kb on - strand, within LRK53_RS01205 at 296.922 kb on + strand, within LRK53_RS01205 at 296.922 kb on + strand, within LRK53_RS01205 at 296.922 kb on + strand, within LRK53_RS01205 at 296.922 kb on + strand, within LRK53_RS01205 at 296.922 kb on + strand, within LRK53_RS01205 at 296.922 kb on + strand, within LRK53_RS01205 at 296.922 kb on + strand, within LRK53_RS01205 at 296.923 kb on - strand, within LRK53_RS01205 at 297.153 kb on + strand, within LRK53_RS01205 at 297.153 kb on + strand, within LRK53_RS01205 at 297.153 kb on + strand, within LRK53_RS01205 at 297.153 kb on + strand, within LRK53_RS01205 at 297.153 kb on + strand, within LRK53_RS01205 at 297.153 kb on + strand, within LRK53_RS01205 at 297.153 kb on + strand, within LRK53_RS01205 at 297.153 kb on + strand, within LRK53_RS01205 at 297.154 kb on - strand, within LRK53_RS01205 at 297.154 kb on - strand, within LRK53_RS01205 at 297.154 kb on - strand, within LRK53_RS01205 at 297.154 kb on - strand, within LRK53_RS01205 at 297.154 kb on - strand, within LRK53_RS01205 at 297.154 kb on - strand, within LRK53_RS01205 at 297.154 kb on - strand, within LRK53_RS01205 at 297.154 kb on - strand, within LRK53_RS01205 at 297.154 kb on - strand, within LRK53_RS01205 at 297.154 kb on - strand, within LRK53_RS01205 at 297.154 kb on - strand, within LRK53_RS01205 at 297.154 kb on - strand, within LRK53_RS01205 at 297.154 kb on - strand, within LRK53_RS01205
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 294,911 - +1.1 294,911 - +0.6 294,911 - -1.8 294,911 - -0.2 294,911 - -0.2 294,911 - +2.0 294,961 + -1.3 294,961 + -0.5 294,961 + -1.1 294,962 - +1.9 294,962 - +1.1 294,964 + +0.5 294,964 + +0.8 294,964 + +1.2 294,964 + -0.6 294,964 + -1.9 294,964 + -0.2 294,964 + +0.3 294,965 - +1.5 294,965 - -1.9 294,965 - -0.4 294,965 - -2.2 294,965 - -1.6 294,965 - +0.9 295,118 + LRK53_RS01190 0.66 -0.2 295,118 + LRK53_RS01190 0.66 -1.6 295,118 + LRK53_RS01190 0.66 +0.4 295,118 + LRK53_RS01190 0.66 -0.2 295,118 + LRK53_RS01190 0.66 -1.6 295,118 + LRK53_RS01190 0.66 -1.0 295,118 + LRK53_RS01190 0.66 -0.4 295,118 + LRK53_RS01190 0.66 -1.4 295,118 + LRK53_RS01190 0.66 -0.0 295,118 + LRK53_RS01190 0.66 -2.3 295,119 - LRK53_RS01190 0.66 +0.4 295,119 - LRK53_RS01190 0.66 -1.7 295,119 - LRK53_RS01190 0.66 -0.3 295,119 - LRK53_RS01190 0.66 -0.2 295,119 - LRK53_RS01190 0.66 +2.8 295,119 - LRK53_RS01190 0.66 -1.1 295,119 - LRK53_RS01190 0.66 -0.2 295,384 + LRK53_RS01195 0.30 +1.5 295,826 - -0.8 295,926 + +1.7 295,926 + +0.6 295,926 + -1.0 295,927 - -0.1 295,927 - -0.3 295,927 - -1.6 295,927 - -0.3 295,927 - -0.8 295,927 - -0.4 295,927 - +1.4 295,929 + -0.4 295,929 + +0.1 295,929 + -1.1 295,929 + +2.2 295,929 + -1.1 295,929 + -0.6 295,929 + -3.4 295,929 + -0.4 295,929 + -2.9 295,929 + +0.1 295,929 + -0.5 295,929 + +2.3 295,929 + +1.0 295,929 + -0.1 295,929 + +0.2 295,929 + +0.4 295,929 + +0.2 295,929 + -1.5 295,929 + +0.4 295,930 - -1.4 295,930 - -0.5 295,930 - -0.1 295,930 - +1.8 295,930 - -0.9 295,930 - +0.5 295,930 - -0.0 295,930 - +0.0 295,930 - +1.4 295,930 - +0.6 295,930 - +1.1 295,930 - -0.6 295,930 - -3.2 295,930 - +0.6 295,930 - -0.6 295,930 - -2.3 295,930 - +0.2 295,930 - +0.3 295,930 - -0.8 295,930 - -0.3 295,930 - -0.5 295,930 - -0.0 295,930 - -2.8 295,930 - -1.8 296,208 + LRK53_RS01200 0.85 -1.1 296,208 + LRK53_RS01200 0.85 +0.9 296,208 + LRK53_RS01200 0.85 -0.8 296,209 - LRK53_RS01200 0.86 +0.8 296,209 - LRK53_RS01200 0.86 +1.9 296,209 - LRK53_RS01200 0.86 +0.3 296,209 - LRK53_RS01200 0.86 +0.8 296,209 - LRK53_RS01200 0.86 -1.0 296,209 - LRK53_RS01200 0.86 -0.6 296,209 - LRK53_RS01200 0.86 +0.3 296,209 - LRK53_RS01200 0.86 -0.0 296,209 - LRK53_RS01200 0.86 +1.3 296,209 - LRK53_RS01200 0.86 -0.1 296,209 - LRK53_RS01200 0.86 -1.6 296,317 + -1.0 296,526 + +1.0 296,526 + -2.1 296,526 + +0.2 296,527 - -0.2 296,527 - -0.3 296,537 + -1.5 296,537 + -0.3 296,537 + -0.7 296,537 + -3.3 296,537 + +2.3 296,537 + +0.9 296,537 + +1.2 296,537 + -0.0 296,537 + -0.9 296,537 + -0.5 296,537 + +1.0 296,537 + -1.7 296,538 - -0.2 296,538 - +1.5 296,538 - +0.3 296,538 - -1.0 296,586 + -0.1 296,679 + LRK53_RS01205 0.14 +1.0 296,679 + LRK53_RS01205 0.14 +2.4 296,679 + LRK53_RS01205 0.14 +0.4 296,679 + LRK53_RS01205 0.14 -1.1 296,679 + LRK53_RS01205 0.14 -0.2 296,679 + LRK53_RS01205 0.14 +2.6 296,679 + LRK53_RS01205 0.14 -0.0 296,679 + LRK53_RS01205 0.14 -0.3 296,679 + LRK53_RS01205 0.14 -0.6 296,679 + LRK53_RS01205 0.14 -0.4 296,679 + LRK53_RS01205 0.14 -0.0 296,679 + LRK53_RS01205 0.14 +0.2 296,679 + LRK53_RS01205 0.14 +0.7 296,679 + LRK53_RS01205 0.14 +2.3 296,679 + LRK53_RS01205 0.14 -0.2 296,679 + LRK53_RS01205 0.14 +1.9 296,680 - LRK53_RS01205 0.14 -0.4 296,680 - LRK53_RS01205 0.14 -0.1 296,680 - LRK53_RS01205 0.14 -0.2 296,680 - LRK53_RS01205 0.14 +0.2 296,680 - LRK53_RS01205 0.14 -0.9 296,680 - LRK53_RS01205 0.14 +0.8 296,680 - LRK53_RS01205 0.14 -2.2 296,680 - LRK53_RS01205 0.14 -2.8 296,680 - LRK53_RS01205 0.14 +0.4 296,680 - LRK53_RS01205 0.14 -2.1 296,862 + LRK53_RS01205 0.22 -0.0 296,862 + LRK53_RS01205 0.22 -0.4 296,863 - LRK53_RS01205 0.22 +1.5 296,863 - LRK53_RS01205 0.22 -1.5 296,863 - LRK53_RS01205 0.22 -3.0 296,922 + LRK53_RS01205 0.25 +0.3 296,922 + LRK53_RS01205 0.25 -0.9 296,922 + LRK53_RS01205 0.25 -1.6 296,922 + LRK53_RS01205 0.25 +0.2 296,922 + LRK53_RS01205 0.25 +0.7 296,922 + LRK53_RS01205 0.25 +0.4 296,922 + LRK53_RS01205 0.25 -0.3 296,923 - LRK53_RS01205 0.25 +0.4 297,153 + LRK53_RS01205 0.35 -0.5 297,153 + LRK53_RS01205 0.35 +0.5 297,153 + LRK53_RS01205 0.35 +2.3 297,153 + LRK53_RS01205 0.35 -0.2 297,153 + LRK53_RS01205 0.35 -1.4 297,153 + LRK53_RS01205 0.35 +1.1 297,153 + LRK53_RS01205 0.35 +1.0 297,153 + LRK53_RS01205 0.35 -3.0 297,154 - LRK53_RS01205 0.35 -2.4 297,154 - LRK53_RS01205 0.35 +0.4 297,154 - LRK53_RS01205 0.35 -1.8 297,154 - LRK53_RS01205 0.35 -0.3 297,154 - LRK53_RS01205 0.35 -0.3 297,154 - LRK53_RS01205 0.35 +1.6 297,154 - LRK53_RS01205 0.35 -0.4 297,154 - LRK53_RS01205 0.35 +1.0 297,154 - LRK53_RS01205 0.35 +1.8 297,154 - LRK53_RS01205 0.35 -0.5 297,154 - LRK53_RS01205 0.35 -1.0 297,154 - LRK53_RS01205 0.35 -0.4 297,154 - LRK53_RS01205 0.35 -0.4
Or see this region's nucleotide sequence