Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS01155

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS01150 and LRK53_RS01155 overlap by 87 nucleotidesLRK53_RS01155 and LRK53_RS01160 overlap by 4 nucleotidesLRK53_RS01160 and LRK53_RS01165 are separated by 114 nucleotides LRK53_RS01150: LRK53_RS01150 - glycoside hydrolase family 17, at 288,216 to 289,814 _RS01150 LRK53_RS01155: LRK53_RS01155 - hypothetical protein, at 289,728 to 290,144 _RS01155 LRK53_RS01160: LRK53_RS01160 - endonuclease/exonuclease/phosphatase family protein, at 290,141 to 290,953 _RS01160 LRK53_RS01165: LRK53_RS01165 - thiol:disulfide interchange protein DsbA/DsbL, at 291,068 to 291,718 _RS01165 Position (kb) 289 290 291Strain fitness (log2 ratio) -2 -1 0 1 2 3at 288.750 kb on + strand, within LRK53_RS01150at 288.750 kb on + strand, within LRK53_RS01150at 288.750 kb on + strand, within LRK53_RS01150at 288.750 kb on + strand, within LRK53_RS01150at 288.750 kb on + strand, within LRK53_RS01150at 288.750 kb on + strand, within LRK53_RS01150at 288.750 kb on + strand, within LRK53_RS01150at 288.750 kb on + strand, within LRK53_RS01150at 288.750 kb on + strand, within LRK53_RS01150at 288.751 kb on - strand, within LRK53_RS01150at 288.751 kb on - strand, within LRK53_RS01150at 288.751 kb on - strand, within LRK53_RS01150at 288.751 kb on - strand, within LRK53_RS01150at 288.751 kb on - strand, within LRK53_RS01150at 288.751 kb on - strand, within LRK53_RS01150at 288.751 kb on - strand, within LRK53_RS01150at 288.751 kb on - strand, within LRK53_RS01150at 288.751 kb on - strand, within LRK53_RS01150at 288.751 kb on - strand, within LRK53_RS01150at 288.751 kb on - strand, within LRK53_RS01150at 288.751 kb on - strand, within LRK53_RS01150at 288.807 kb on + strand, within LRK53_RS01150at 288.807 kb on + strand, within LRK53_RS01150at 288.807 kb on + strand, within LRK53_RS01150at 288.807 kb on + strand, within LRK53_RS01150at 288.807 kb on + strand, within LRK53_RS01150at 288.807 kb on + strand, within LRK53_RS01150at 288.807 kb on + strand, within LRK53_RS01150at 288.807 kb on + strand, within LRK53_RS01150at 288.807 kb on + strand, within LRK53_RS01150at 288.808 kb on - strand, within LRK53_RS01150at 288.808 kb on - strand, within LRK53_RS01150at 288.808 kb on - strand, within LRK53_RS01150at 288.808 kb on - strand, within LRK53_RS01150at 288.832 kb on - strand, within LRK53_RS01150at 288.832 kb on - strand, within LRK53_RS01150at 288.868 kb on + strand, within LRK53_RS01150at 288.868 kb on + strand, within LRK53_RS01150at 288.869 kb on - strand, within LRK53_RS01150at 288.869 kb on - strand, within LRK53_RS01150at 288.869 kb on - strand, within LRK53_RS01150at 288.888 kb on + strand, within LRK53_RS01150at 288.888 kb on + strand, within LRK53_RS01150at 288.888 kb on + strand, within LRK53_RS01150at 288.889 kb on - strand, within LRK53_RS01150at 288.889 kb on - strand, within LRK53_RS01150at 288.889 kb on - strand, within LRK53_RS01150at 288.889 kb on - strand, within LRK53_RS01150at 289.005 kb on + strand, within LRK53_RS01150at 289.050 kb on + strand, within LRK53_RS01150at 289.050 kb on + strand, within LRK53_RS01150at 289.050 kb on + strand, within LRK53_RS01150at 289.050 kb on + strand, within LRK53_RS01150at 289.050 kb on + strand, within LRK53_RS01150at 289.050 kb on + strand, within LRK53_RS01150at 289.050 kb on + strand, within LRK53_RS01150at 289.050 kb on + strand, within LRK53_RS01150at 289.051 kb on - strand, within LRK53_RS01150at 289.051 kb on - strand, within LRK53_RS01150at 289.051 kb on - strand, within LRK53_RS01150at 289.051 kb on - strand, within LRK53_RS01150at 289.051 kb on - strand, within LRK53_RS01150at 289.051 kb on - strand, within LRK53_RS01150at 289.051 kb on - strand, within LRK53_RS01150at 289.051 kb on - strand, within LRK53_RS01150at 289.113 kb on + strand, within LRK53_RS01150at 289.344 kb on + strand, within LRK53_RS01150at 289.344 kb on + strand, within LRK53_RS01150at 289.344 kb on + strand, within LRK53_RS01150at 289.344 kb on + strand, within LRK53_RS01150at 289.344 kb on + strand, within LRK53_RS01150at 289.344 kb on + strand, within LRK53_RS01150at 289.345 kb on - strand, within LRK53_RS01150at 289.345 kb on - strand, within LRK53_RS01150at 289.345 kb on - strand, within LRK53_RS01150at 289.512 kb on + strand, within LRK53_RS01150at 289.512 kb on + strand, within LRK53_RS01150at 289.512 kb on + strand, within LRK53_RS01150at 289.512 kb on + strand, within LRK53_RS01150at 289.512 kb on + strand, within LRK53_RS01150at 289.513 kb on - strand, within LRK53_RS01150at 289.515 kb on + strand, within LRK53_RS01150at 289.515 kb on + strand, within LRK53_RS01150at 289.515 kb on + strand, within LRK53_RS01150at 289.729 kb on + strandat 289.729 kb on + strandat 289.729 kb on + strandat 289.729 kb on + strandat 289.730 kb on - strandat 289.730 kb on - strandat 289.812 kb on + strandat 289.812 kb on + strandat 289.812 kb on + strandat 289.812 kb on + strandat 289.812 kb on + strandat 289.812 kb on + strandat 289.812 kb on + strandat 289.812 kb on + strandat 289.812 kb on + strandat 289.813 kb on - strandat 289.813 kb on - strandat 289.813 kb on - strandat 289.813 kb on - strandat 289.813 kb on - strandat 289.813 kb on - strandat 289.813 kb on - strandat 289.813 kb on - strandat 289.813 kb on - strandat 289.813 kb on - strandat 289.855 kb on + strand, within LRK53_RS01155at 289.855 kb on + strand, within LRK53_RS01155at 289.856 kb on - strand, within LRK53_RS01155at 289.856 kb on - strand, within LRK53_RS01155at 289.856 kb on - strand, within LRK53_RS01155at 289.856 kb on - strand, within LRK53_RS01155at 289.856 kb on - strand, within LRK53_RS01155at 289.957 kb on + strand, within LRK53_RS01155at 289.957 kb on + strand, within LRK53_RS01155at 289.957 kb on + strand, within LRK53_RS01155at 289.958 kb on - strand, within LRK53_RS01155at 289.958 kb on - strand, within LRK53_RS01155at 289.958 kb on - strand, within LRK53_RS01155at 289.966 kb on + strand, within LRK53_RS01155at 289.966 kb on + strand, within LRK53_RS01155at 289.966 kb on + strand, within LRK53_RS01155at 289.966 kb on + strand, within LRK53_RS01155at 289.966 kb on + strand, within LRK53_RS01155at 289.967 kb on - strand, within LRK53_RS01155at 289.967 kb on - strand, within LRK53_RS01155at 290.578 kb on - strand, within LRK53_RS01160at 290.586 kb on - strand, within LRK53_RS01160at 290.586 kb on - strand, within LRK53_RS01160at 290.697 kb on + strand, within LRK53_RS01160at 290.697 kb on + strand, within LRK53_RS01160at 290.698 kb on - strand, within LRK53_RS01160at 290.698 kb on - strand, within LRK53_RS01160at 290.850 kb on + strand, within LRK53_RS01160at 290.850 kb on + strand, within LRK53_RS01160at 290.850 kb on + strand, within LRK53_RS01160at 290.850 kb on + strand, within LRK53_RS01160at 290.850 kb on + strand, within LRK53_RS01160at 290.850 kb on + strand, within LRK53_RS01160at 290.850 kb on + strand, within LRK53_RS01160at 290.850 kb on + strand, within LRK53_RS01160at 290.850 kb on + strand, within LRK53_RS01160at 290.850 kb on + strand, within LRK53_RS01160at 290.850 kb on + strand, within LRK53_RS01160at 290.850 kb on + strand, within LRK53_RS01160at 290.850 kb on + strand, within LRK53_RS01160at 290.850 kb on + strand, within LRK53_RS01160at 290.851 kb on - strand, within LRK53_RS01160at 290.851 kb on - strand, within LRK53_RS01160at 290.851 kb on - strand, within LRK53_RS01160at 290.851 kb on - strand, within LRK53_RS01160at 290.851 kb on - strand, within LRK53_RS01160at 290.851 kb on - strand, within LRK53_RS01160at 290.851 kb on - strand, within LRK53_RS01160at 290.851 kb on - strand, within LRK53_RS01160at 290.851 kb on - strand, within LRK53_RS01160at 290.851 kb on - strand, within LRK53_RS01160at 290.851 kb on - strand, within LRK53_RS01160at 290.859 kb on + strand, within LRK53_RS01160at 290.859 kb on + strand, within LRK53_RS01160at 290.859 kb on + strand, within LRK53_RS01160at 290.859 kb on + strand, within LRK53_RS01160at 290.859 kb on + strand, within LRK53_RS01160at 290.860 kb on - strand, within LRK53_RS01160at 290.860 kb on - strand, within LRK53_RS01160at 290.860 kb on - strand, within LRK53_RS01160at 290.964 kb on + strandat 290.964 kb on + strandat 290.964 kb on + strandat 290.964 kb on + strandat 290.964 kb on + strandat 290.964 kb on + strandat 290.964 kb on + strandat 290.964 kb on + strandat 290.964 kb on + strandat 290.964 kb on + strandat 290.965 kb on - strandat 290.965 kb on - strandat 290.965 kb on - strandat 290.965 kb on - strandat 290.965 kb on - strandat 290.965 kb on - strandat 290.965 kb on - strandat 290.965 kb on - strandat 290.965 kb on - strandat 290.965 kb on - strandat 290.965 kb on - strandat 290.965 kb on - strandat 290.965 kb on - strandat 290.965 kb on - strandat 290.965 kb on - strandat 290.965 kb on - strandat 290.965 kb on - strandat 290.965 kb on - strandat 290.991 kb on + strandat 290.991 kb on + strandat 290.991 kb on + strandat 290.991 kb on + strandat 290.991 kb on + strandat 290.991 kb on + strandat 290.992 kb on - strandat 290.992 kb on - strandat 290.992 kb on - strandat 290.992 kb on - strandat 290.992 kb on - strandat 290.992 kb on - strandat 290.992 kb on - strandat 290.992 kb on - strandat 290.992 kb on - strandat 290.992 kb on - strandat 290.992 kb on - strandat 290.992 kb on - strandat 291.069 kb on + strandat 291.069 kb on + strandat 291.069 kb on + strandat 291.069 kb on + strandat 291.069 kb on + strandat 291.069 kb on + strandat 291.069 kb on + strandat 291.069 kb on + strandat 291.069 kb on + strandat 291.069 kb on + strandat 291.069 kb on + strandat 291.069 kb on + strandat 291.069 kb on + strandat 291.069 kb on + strandat 291.069 kb on + strandat 291.069 kb on + strandat 291.069 kb on + strandat 291.069 kb on + strandat 291.069 kb on + strandat 291.070 kb on - strandat 291.070 kb on - strandat 291.070 kb on - strandat 291.070 kb on - strandat 291.070 kb on - strandat 291.070 kb on - strandat 291.070 kb on - strandat 291.070 kb on - strandat 291.070 kb on - strandat 291.070 kb on - strandat 291.070 kb on - strandat 291.070 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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288,750 + LRK53_RS01150 0.33 +1.1
288,750 + LRK53_RS01150 0.33 +0.1
288,750 + LRK53_RS01150 0.33 +1.8
288,750 + LRK53_RS01150 0.33 -0.2
288,750 + LRK53_RS01150 0.33 -1.0
288,750 + LRK53_RS01150 0.33 +0.8
288,750 + LRK53_RS01150 0.33 -1.1
288,750 + LRK53_RS01150 0.33 -0.6
288,750 + LRK53_RS01150 0.33 +2.0
288,751 - LRK53_RS01150 0.33 -2.5
288,751 - LRK53_RS01150 0.33 -0.6
288,751 - LRK53_RS01150 0.33 +1.1
288,751 - LRK53_RS01150 0.33 -0.9
288,751 - LRK53_RS01150 0.33 -0.4
288,751 - LRK53_RS01150 0.33 -2.6
288,751 - LRK53_RS01150 0.33 -0.6
288,751 - LRK53_RS01150 0.33 -0.8
288,751 - LRK53_RS01150 0.33 +0.4
288,751 - LRK53_RS01150 0.33 -0.6
288,751 - LRK53_RS01150 0.33 +1.5
288,751 - LRK53_RS01150 0.33 -1.1
288,807 + LRK53_RS01150 0.37 -0.1
288,807 + LRK53_RS01150 0.37 +0.0
288,807 + LRK53_RS01150 0.37 +0.2
288,807 + LRK53_RS01150 0.37 -0.3
288,807 + LRK53_RS01150 0.37 -0.9
288,807 + LRK53_RS01150 0.37 -1.3
288,807 + LRK53_RS01150 0.37 -0.2
288,807 + LRK53_RS01150 0.37 +3.4
288,807 + LRK53_RS01150 0.37 -0.6
288,808 - LRK53_RS01150 0.37 -0.1
288,808 - LRK53_RS01150 0.37 +0.3
288,808 - LRK53_RS01150 0.37 +1.1
288,808 - LRK53_RS01150 0.37 +0.8
288,832 - LRK53_RS01150 0.39 -1.7
288,832 - LRK53_RS01150 0.39 -0.9
288,868 + LRK53_RS01150 0.41 +0.8
288,868 + LRK53_RS01150 0.41 -1.9
288,869 - LRK53_RS01150 0.41 -1.6
288,869 - LRK53_RS01150 0.41 -1.4
288,869 - LRK53_RS01150 0.41 -0.3
288,888 + LRK53_RS01150 0.42 -1.2
288,888 + LRK53_RS01150 0.42 -1.8
288,888 + LRK53_RS01150 0.42 +0.4
288,889 - LRK53_RS01150 0.42 -0.0
288,889 - LRK53_RS01150 0.42 -1.0
288,889 - LRK53_RS01150 0.42 -1.3
288,889 - LRK53_RS01150 0.42 +0.3
289,005 + LRK53_RS01150 0.49 -0.2
289,050 + LRK53_RS01150 0.52 -1.4
289,050 + LRK53_RS01150 0.52 -1.2
289,050 + LRK53_RS01150 0.52 -0.1
289,050 + LRK53_RS01150 0.52 -0.7
289,050 + LRK53_RS01150 0.52 +2.4
289,050 + LRK53_RS01150 0.52 -1.5
289,050 + LRK53_RS01150 0.52 -2.1
289,050 + LRK53_RS01150 0.52 +0.5
289,051 - LRK53_RS01150 0.52 -0.8
289,051 - LRK53_RS01150 0.52 -1.9
289,051 - LRK53_RS01150 0.52 -0.9
289,051 - LRK53_RS01150 0.52 +1.1
289,051 - LRK53_RS01150 0.52 +0.3
289,051 - LRK53_RS01150 0.52 +0.3
289,051 - LRK53_RS01150 0.52 +1.4
289,051 - LRK53_RS01150 0.52 +0.5
289,113 + LRK53_RS01150 0.56 -1.2
289,344 + LRK53_RS01150 0.71 +2.8
289,344 + LRK53_RS01150 0.71 +0.4
289,344 + LRK53_RS01150 0.71 -1.6
289,344 + LRK53_RS01150 0.71 -0.4
289,344 + LRK53_RS01150 0.71 +0.0
289,344 + LRK53_RS01150 0.71 -0.2
289,345 - LRK53_RS01150 0.71 -0.1
289,345 - LRK53_RS01150 0.71 -0.5
289,345 - LRK53_RS01150 0.71 -1.2
289,512 + LRK53_RS01150 0.81 +0.1
289,512 + LRK53_RS01150 0.81 -0.1
289,512 + LRK53_RS01150 0.81 -0.7
289,512 + LRK53_RS01150 0.81 +0.8
289,512 + LRK53_RS01150 0.81 +0.2
289,513 - LRK53_RS01150 0.81 +0.9
289,515 + LRK53_RS01150 0.81 -1.2
289,515 + LRK53_RS01150 0.81 -1.8
289,515 + LRK53_RS01150 0.81 +0.2
289,729 + -1.1
289,729 + +0.4
289,729 + -0.9
289,729 + +1.2
289,730 - -0.3
289,730 - +0.1
289,812 + +2.1
289,812 + -0.2
289,812 + +0.6
289,812 + -0.8
289,812 + -1.0
289,812 + -0.6
289,812 + -0.0
289,812 + +0.4
289,812 + -1.0
289,813 - +1.9
289,813 - -1.2
289,813 - -0.1
289,813 - -0.5
289,813 - +0.8
289,813 - -1.6
289,813 - -0.7
289,813 - -0.9
289,813 - +1.0
289,813 - -2.2
289,855 + LRK53_RS01155 0.30 +0.4
289,855 + LRK53_RS01155 0.30 -0.1
289,856 - LRK53_RS01155 0.31 +0.5
289,856 - LRK53_RS01155 0.31 -0.6
289,856 - LRK53_RS01155 0.31 -0.1
289,856 - LRK53_RS01155 0.31 -0.0
289,856 - LRK53_RS01155 0.31 +1.9
289,957 + LRK53_RS01155 0.55 +1.2
289,957 + LRK53_RS01155 0.55 -1.9
289,957 + LRK53_RS01155 0.55 +0.1
289,958 - LRK53_RS01155 0.55 +1.1
289,958 - LRK53_RS01155 0.55 +0.7
289,958 - LRK53_RS01155 0.55 -0.0
289,966 + LRK53_RS01155 0.57 +2.3
289,966 + LRK53_RS01155 0.57 -0.6
289,966 + LRK53_RS01155 0.57 -2.3
289,966 + LRK53_RS01155 0.57 -0.5
289,966 + LRK53_RS01155 0.57 +1.4
289,967 - LRK53_RS01155 0.57 -1.1
289,967 - LRK53_RS01155 0.57 -1.5
290,578 - LRK53_RS01160 0.54 +0.7
290,586 - LRK53_RS01160 0.55 +0.3
290,586 - LRK53_RS01160 0.55 -0.4
290,697 + LRK53_RS01160 0.68 +1.4
290,697 + LRK53_RS01160 0.68 +0.8
290,698 - LRK53_RS01160 0.69 -0.6
290,698 - LRK53_RS01160 0.69 -1.3
290,850 + LRK53_RS01160 0.87 -1.0
290,850 + LRK53_RS01160 0.87 -1.1
290,850 + LRK53_RS01160 0.87 +1.2
290,850 + LRK53_RS01160 0.87 +0.1
290,850 + LRK53_RS01160 0.87 +0.1
290,850 + LRK53_RS01160 0.87 -0.6
290,850 + LRK53_RS01160 0.87 -1.6
290,850 + LRK53_RS01160 0.87 +0.3
290,850 + LRK53_RS01160 0.87 +0.8
290,850 + LRK53_RS01160 0.87 -0.5
290,850 + LRK53_RS01160 0.87 +1.2
290,850 + LRK53_RS01160 0.87 -0.9
290,850 + LRK53_RS01160 0.87 +0.7
290,850 + LRK53_RS01160 0.87 +0.4
290,851 - LRK53_RS01160 0.87 -0.6
290,851 - LRK53_RS01160 0.87 +0.2
290,851 - LRK53_RS01160 0.87 -0.1
290,851 - LRK53_RS01160 0.87 -0.1
290,851 - LRK53_RS01160 0.87 -0.1
290,851 - LRK53_RS01160 0.87 -0.7
290,851 - LRK53_RS01160 0.87 +1.2
290,851 - LRK53_RS01160 0.87 -1.2
290,851 - LRK53_RS01160 0.87 -0.6
290,851 - LRK53_RS01160 0.87 -0.2
290,851 - LRK53_RS01160 0.87 +1.5
290,859 + LRK53_RS01160 0.88 -1.6
290,859 + LRK53_RS01160 0.88 -1.4
290,859 + LRK53_RS01160 0.88 +1.0
290,859 + LRK53_RS01160 0.88 -2.5
290,859 + LRK53_RS01160 0.88 +0.2
290,860 - LRK53_RS01160 0.88 +1.4
290,860 - LRK53_RS01160 0.88 +1.3
290,860 - LRK53_RS01160 0.88 -0.3
290,964 + -0.0
290,964 + +0.2
290,964 + -1.1
290,964 + -0.5
290,964 + -0.7
290,964 + +1.2
290,964 + -0.3
290,964 + -1.3
290,964 + -0.2
290,964 + -0.6
290,965 - +0.2
290,965 - -0.1
290,965 - +0.5
290,965 - -1.1
290,965 - -1.2
290,965 - -1.3
290,965 - -0.7
290,965 - +0.3
290,965 - +0.1
290,965 - -0.0
290,965 - +0.1
290,965 - -0.9
290,965 - +0.3
290,965 - +1.4
290,965 - -1.5
290,965 - +1.8
290,965 - +1.3
290,965 - -0.1
290,991 + -0.4
290,991 + -0.2
290,991 + +0.7
290,991 + -2.5
290,991 + -0.2
290,991 + -2.1
290,992 - +0.4
290,992 - +0.5
290,992 - +1.2
290,992 - -0.3
290,992 - +0.2
290,992 - -1.6
290,992 - +0.1
290,992 - -0.1
290,992 - +0.2
290,992 - -0.4
290,992 - -2.3
290,992 - +0.3
291,069 + -0.8
291,069 + -0.9
291,069 + -1.2
291,069 + +1.5
291,069 + -1.4
291,069 + +0.2
291,069 + +0.4
291,069 + -0.4
291,069 + -0.1
291,069 + -1.0
291,069 + +1.5
291,069 + -1.0
291,069 + -2.7
291,069 + -0.5
291,069 + -0.2
291,069 + +0.6
291,069 + -0.0
291,069 + -0.8
291,069 + +1.2
291,070 - -0.1
291,070 - -2.6
291,070 - +0.4
291,070 - +1.7
291,070 - -0.0
291,070 - +1.1
291,070 - -0.0
291,070 - +0.1
291,070 - -0.9
291,070 - -0.7
291,070 - -0.1
291,070 - -0.0

Or see this region's nucleotide sequence