Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS01150 and LRK53_RS01155 overlap by 87 nucleotides LRK53_RS01155 and LRK53_RS01160 overlap by 4 nucleotides LRK53_RS01160 and LRK53_RS01165 are separated by 114 nucleotides
LRK53_RS01150: LRK53_RS01150 - glycoside hydrolase family 17, at 288,216 to 289,814
_RS01150
LRK53_RS01155: LRK53_RS01155 - hypothetical protein, at 289,728 to 290,144
_RS01155
LRK53_RS01160: LRK53_RS01160 - endonuclease/exonuclease/phosphatase family protein, at 290,141 to 290,953
_RS01160
LRK53_RS01165: LRK53_RS01165 - thiol:disulfide interchange protein DsbA/DsbL, at 291,068 to 291,718
_RS01165
Position (kb) 289
290
291 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 288.750 kb on + strand, within LRK53_RS01150 at 288.750 kb on + strand, within LRK53_RS01150 at 288.750 kb on + strand, within LRK53_RS01150 at 288.750 kb on + strand, within LRK53_RS01150 at 288.750 kb on + strand, within LRK53_RS01150 at 288.750 kb on + strand, within LRK53_RS01150 at 288.750 kb on + strand, within LRK53_RS01150 at 288.750 kb on + strand, within LRK53_RS01150 at 288.750 kb on + strand, within LRK53_RS01150 at 288.751 kb on - strand, within LRK53_RS01150 at 288.751 kb on - strand, within LRK53_RS01150 at 288.751 kb on - strand, within LRK53_RS01150 at 288.751 kb on - strand, within LRK53_RS01150 at 288.751 kb on - strand, within LRK53_RS01150 at 288.751 kb on - strand, within LRK53_RS01150 at 288.751 kb on - strand, within LRK53_RS01150 at 288.751 kb on - strand, within LRK53_RS01150 at 288.751 kb on - strand, within LRK53_RS01150 at 288.751 kb on - strand, within LRK53_RS01150 at 288.751 kb on - strand, within LRK53_RS01150 at 288.751 kb on - strand, within LRK53_RS01150 at 288.807 kb on + strand, within LRK53_RS01150 at 288.807 kb on + strand, within LRK53_RS01150 at 288.807 kb on + strand, within LRK53_RS01150 at 288.807 kb on + strand, within LRK53_RS01150 at 288.807 kb on + strand, within LRK53_RS01150 at 288.807 kb on + strand, within LRK53_RS01150 at 288.807 kb on + strand, within LRK53_RS01150 at 288.807 kb on + strand, within LRK53_RS01150 at 288.807 kb on + strand, within LRK53_RS01150 at 288.808 kb on - strand, within LRK53_RS01150 at 288.808 kb on - strand, within LRK53_RS01150 at 288.808 kb on - strand, within LRK53_RS01150 at 288.808 kb on - strand, within LRK53_RS01150 at 288.832 kb on - strand, within LRK53_RS01150 at 288.832 kb on - strand, within LRK53_RS01150 at 288.868 kb on + strand, within LRK53_RS01150 at 288.868 kb on + strand, within LRK53_RS01150 at 288.869 kb on - strand, within LRK53_RS01150 at 288.869 kb on - strand, within LRK53_RS01150 at 288.869 kb on - strand, within LRK53_RS01150 at 288.888 kb on + strand, within LRK53_RS01150 at 288.888 kb on + strand, within LRK53_RS01150 at 288.888 kb on + strand, within LRK53_RS01150 at 288.889 kb on - strand, within LRK53_RS01150 at 288.889 kb on - strand, within LRK53_RS01150 at 288.889 kb on - strand, within LRK53_RS01150 at 288.889 kb on - strand, within LRK53_RS01150 at 289.005 kb on + strand, within LRK53_RS01150 at 289.050 kb on + strand, within LRK53_RS01150 at 289.050 kb on + strand, within LRK53_RS01150 at 289.050 kb on + strand, within LRK53_RS01150 at 289.050 kb on + strand, within LRK53_RS01150 at 289.050 kb on + strand, within LRK53_RS01150 at 289.050 kb on + strand, within LRK53_RS01150 at 289.050 kb on + strand, within LRK53_RS01150 at 289.050 kb on + strand, within LRK53_RS01150 at 289.051 kb on - strand, within LRK53_RS01150 at 289.051 kb on - strand, within LRK53_RS01150 at 289.051 kb on - strand, within LRK53_RS01150 at 289.051 kb on - strand, within LRK53_RS01150 at 289.051 kb on - strand, within LRK53_RS01150 at 289.051 kb on - strand, within LRK53_RS01150 at 289.051 kb on - strand, within LRK53_RS01150 at 289.051 kb on - strand, within LRK53_RS01150 at 289.113 kb on + strand, within LRK53_RS01150 at 289.344 kb on + strand, within LRK53_RS01150 at 289.344 kb on + strand, within LRK53_RS01150 at 289.344 kb on + strand, within LRK53_RS01150 at 289.344 kb on + strand, within LRK53_RS01150 at 289.344 kb on + strand, within LRK53_RS01150 at 289.344 kb on + strand, within LRK53_RS01150 at 289.345 kb on - strand, within LRK53_RS01150 at 289.345 kb on - strand, within LRK53_RS01150 at 289.345 kb on - strand, within LRK53_RS01150 at 289.512 kb on + strand, within LRK53_RS01150 at 289.512 kb on + strand, within LRK53_RS01150 at 289.512 kb on + strand, within LRK53_RS01150 at 289.512 kb on + strand, within LRK53_RS01150 at 289.512 kb on + strand, within LRK53_RS01150 at 289.513 kb on - strand, within LRK53_RS01150 at 289.515 kb on + strand, within LRK53_RS01150 at 289.515 kb on + strand, within LRK53_RS01150 at 289.515 kb on + strand, within LRK53_RS01150 at 289.729 kb on + strand at 289.729 kb on + strand at 289.729 kb on + strand at 289.729 kb on + strand at 289.730 kb on - strand at 289.730 kb on - strand at 289.812 kb on + strand at 289.812 kb on + strand at 289.812 kb on + strand at 289.812 kb on + strand at 289.812 kb on + strand at 289.812 kb on + strand at 289.812 kb on + strand at 289.812 kb on + strand at 289.812 kb on + strand at 289.813 kb on - strand at 289.813 kb on - strand at 289.813 kb on - strand at 289.813 kb on - strand at 289.813 kb on - strand at 289.813 kb on - strand at 289.813 kb on - strand at 289.813 kb on - strand at 289.813 kb on - strand at 289.813 kb on - strand at 289.855 kb on + strand, within LRK53_RS01155 at 289.855 kb on + strand, within LRK53_RS01155 at 289.856 kb on - strand, within LRK53_RS01155 at 289.856 kb on - strand, within LRK53_RS01155 at 289.856 kb on - strand, within LRK53_RS01155 at 289.856 kb on - strand, within LRK53_RS01155 at 289.856 kb on - strand, within LRK53_RS01155 at 289.957 kb on + strand, within LRK53_RS01155 at 289.957 kb on + strand, within LRK53_RS01155 at 289.957 kb on + strand, within LRK53_RS01155 at 289.958 kb on - strand, within LRK53_RS01155 at 289.958 kb on - strand, within LRK53_RS01155 at 289.958 kb on - strand, within LRK53_RS01155 at 289.966 kb on + strand, within LRK53_RS01155 at 289.966 kb on + strand, within LRK53_RS01155 at 289.966 kb on + strand, within LRK53_RS01155 at 289.966 kb on + strand, within LRK53_RS01155 at 289.966 kb on + strand, within LRK53_RS01155 at 289.967 kb on - strand, within LRK53_RS01155 at 289.967 kb on - strand, within LRK53_RS01155 at 290.578 kb on - strand, within LRK53_RS01160 at 290.586 kb on - strand, within LRK53_RS01160 at 290.586 kb on - strand, within LRK53_RS01160 at 290.697 kb on + strand, within LRK53_RS01160 at 290.697 kb on + strand, within LRK53_RS01160 at 290.698 kb on - strand, within LRK53_RS01160 at 290.698 kb on - strand, within LRK53_RS01160 at 290.850 kb on + strand, within LRK53_RS01160 at 290.850 kb on + strand, within LRK53_RS01160 at 290.850 kb on + strand, within LRK53_RS01160 at 290.850 kb on + strand, within LRK53_RS01160 at 290.850 kb on + strand, within LRK53_RS01160 at 290.850 kb on + strand, within LRK53_RS01160 at 290.850 kb on + strand, within LRK53_RS01160 at 290.850 kb on + strand, within LRK53_RS01160 at 290.850 kb on + strand, within LRK53_RS01160 at 290.850 kb on + strand, within LRK53_RS01160 at 290.850 kb on + strand, within LRK53_RS01160 at 290.850 kb on + strand, within LRK53_RS01160 at 290.850 kb on + strand, within LRK53_RS01160 at 290.850 kb on + strand, within LRK53_RS01160 at 290.851 kb on - strand, within LRK53_RS01160 at 290.851 kb on - strand, within LRK53_RS01160 at 290.851 kb on - strand, within LRK53_RS01160 at 290.851 kb on - strand, within LRK53_RS01160 at 290.851 kb on - strand, within LRK53_RS01160 at 290.851 kb on - strand, within LRK53_RS01160 at 290.851 kb on - strand, within LRK53_RS01160 at 290.851 kb on - strand, within LRK53_RS01160 at 290.851 kb on - strand, within LRK53_RS01160 at 290.851 kb on - strand, within LRK53_RS01160 at 290.851 kb on - strand, within LRK53_RS01160 at 290.859 kb on + strand, within LRK53_RS01160 at 290.859 kb on + strand, within LRK53_RS01160 at 290.859 kb on + strand, within LRK53_RS01160 at 290.859 kb on + strand, within LRK53_RS01160 at 290.859 kb on + strand, within LRK53_RS01160 at 290.860 kb on - strand, within LRK53_RS01160 at 290.860 kb on - strand, within LRK53_RS01160 at 290.860 kb on - strand, within LRK53_RS01160 at 290.964 kb on + strand at 290.964 kb on + strand at 290.964 kb on + strand at 290.964 kb on + strand at 290.964 kb on + strand at 290.964 kb on + strand at 290.964 kb on + strand at 290.964 kb on + strand at 290.964 kb on + strand at 290.964 kb on + strand at 290.965 kb on - strand at 290.965 kb on - strand at 290.965 kb on - strand at 290.965 kb on - strand at 290.965 kb on - strand at 290.965 kb on - strand at 290.965 kb on - strand at 290.965 kb on - strand at 290.965 kb on - strand at 290.965 kb on - strand at 290.965 kb on - strand at 290.965 kb on - strand at 290.965 kb on - strand at 290.965 kb on - strand at 290.965 kb on - strand at 290.965 kb on - strand at 290.965 kb on - strand at 290.965 kb on - strand at 290.991 kb on + strand at 290.991 kb on + strand at 290.991 kb on + strand at 290.991 kb on + strand at 290.991 kb on + strand at 290.991 kb on + strand at 290.992 kb on - strand at 290.992 kb on - strand at 290.992 kb on - strand at 290.992 kb on - strand at 290.992 kb on - strand at 290.992 kb on - strand at 290.992 kb on - strand at 290.992 kb on - strand at 290.992 kb on - strand at 290.992 kb on - strand at 290.992 kb on - strand at 290.992 kb on - strand at 291.069 kb on + strand at 291.069 kb on + strand at 291.069 kb on + strand at 291.069 kb on + strand at 291.069 kb on + strand at 291.069 kb on + strand at 291.069 kb on + strand at 291.069 kb on + strand at 291.069 kb on + strand at 291.069 kb on + strand at 291.069 kb on + strand at 291.069 kb on + strand at 291.069 kb on + strand at 291.069 kb on + strand at 291.069 kb on + strand at 291.069 kb on + strand at 291.069 kb on + strand at 291.069 kb on + strand at 291.069 kb on + strand at 291.070 kb on - strand at 291.070 kb on - strand at 291.070 kb on - strand at 291.070 kb on - strand at 291.070 kb on - strand at 291.070 kb on - strand at 291.070 kb on - strand at 291.070 kb on - strand at 291.070 kb on - strand at 291.070 kb on - strand at 291.070 kb on - strand at 291.070 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 288,750 + LRK53_RS01150 0.33 +1.1 288,750 + LRK53_RS01150 0.33 +0.1 288,750 + LRK53_RS01150 0.33 +1.8 288,750 + LRK53_RS01150 0.33 -0.2 288,750 + LRK53_RS01150 0.33 -1.0 288,750 + LRK53_RS01150 0.33 +0.8 288,750 + LRK53_RS01150 0.33 -1.1 288,750 + LRK53_RS01150 0.33 -0.6 288,750 + LRK53_RS01150 0.33 +2.0 288,751 - LRK53_RS01150 0.33 -2.5 288,751 - LRK53_RS01150 0.33 -0.6 288,751 - LRK53_RS01150 0.33 +1.1 288,751 - LRK53_RS01150 0.33 -0.9 288,751 - LRK53_RS01150 0.33 -0.4 288,751 - LRK53_RS01150 0.33 -2.6 288,751 - LRK53_RS01150 0.33 -0.6 288,751 - LRK53_RS01150 0.33 -0.8 288,751 - LRK53_RS01150 0.33 +0.4 288,751 - LRK53_RS01150 0.33 -0.6 288,751 - LRK53_RS01150 0.33 +1.5 288,751 - LRK53_RS01150 0.33 -1.1 288,807 + LRK53_RS01150 0.37 -0.1 288,807 + LRK53_RS01150 0.37 +0.0 288,807 + LRK53_RS01150 0.37 +0.2 288,807 + LRK53_RS01150 0.37 -0.3 288,807 + LRK53_RS01150 0.37 -0.9 288,807 + LRK53_RS01150 0.37 -1.3 288,807 + LRK53_RS01150 0.37 -0.2 288,807 + LRK53_RS01150 0.37 +3.4 288,807 + LRK53_RS01150 0.37 -0.6 288,808 - LRK53_RS01150 0.37 -0.1 288,808 - LRK53_RS01150 0.37 +0.3 288,808 - LRK53_RS01150 0.37 +1.1 288,808 - LRK53_RS01150 0.37 +0.8 288,832 - LRK53_RS01150 0.39 -1.7 288,832 - LRK53_RS01150 0.39 -0.9 288,868 + LRK53_RS01150 0.41 +0.8 288,868 + LRK53_RS01150 0.41 -1.9 288,869 - LRK53_RS01150 0.41 -1.6 288,869 - LRK53_RS01150 0.41 -1.4 288,869 - LRK53_RS01150 0.41 -0.3 288,888 + LRK53_RS01150 0.42 -1.2 288,888 + LRK53_RS01150 0.42 -1.8 288,888 + LRK53_RS01150 0.42 +0.4 288,889 - LRK53_RS01150 0.42 -0.0 288,889 - LRK53_RS01150 0.42 -1.0 288,889 - LRK53_RS01150 0.42 -1.3 288,889 - LRK53_RS01150 0.42 +0.3 289,005 + LRK53_RS01150 0.49 -0.2 289,050 + LRK53_RS01150 0.52 -1.4 289,050 + LRK53_RS01150 0.52 -1.2 289,050 + LRK53_RS01150 0.52 -0.1 289,050 + LRK53_RS01150 0.52 -0.7 289,050 + LRK53_RS01150 0.52 +2.4 289,050 + LRK53_RS01150 0.52 -1.5 289,050 + LRK53_RS01150 0.52 -2.1 289,050 + LRK53_RS01150 0.52 +0.5 289,051 - LRK53_RS01150 0.52 -0.8 289,051 - LRK53_RS01150 0.52 -1.9 289,051 - LRK53_RS01150 0.52 -0.9 289,051 - LRK53_RS01150 0.52 +1.1 289,051 - LRK53_RS01150 0.52 +0.3 289,051 - LRK53_RS01150 0.52 +0.3 289,051 - LRK53_RS01150 0.52 +1.4 289,051 - LRK53_RS01150 0.52 +0.5 289,113 + LRK53_RS01150 0.56 -1.2 289,344 + LRK53_RS01150 0.71 +2.8 289,344 + LRK53_RS01150 0.71 +0.4 289,344 + LRK53_RS01150 0.71 -1.6 289,344 + LRK53_RS01150 0.71 -0.4 289,344 + LRK53_RS01150 0.71 +0.0 289,344 + LRK53_RS01150 0.71 -0.2 289,345 - LRK53_RS01150 0.71 -0.1 289,345 - LRK53_RS01150 0.71 -0.5 289,345 - LRK53_RS01150 0.71 -1.2 289,512 + LRK53_RS01150 0.81 +0.1 289,512 + LRK53_RS01150 0.81 -0.1 289,512 + LRK53_RS01150 0.81 -0.7 289,512 + LRK53_RS01150 0.81 +0.8 289,512 + LRK53_RS01150 0.81 +0.2 289,513 - LRK53_RS01150 0.81 +0.9 289,515 + LRK53_RS01150 0.81 -1.2 289,515 + LRK53_RS01150 0.81 -1.8 289,515 + LRK53_RS01150 0.81 +0.2 289,729 + -1.1 289,729 + +0.4 289,729 + -0.9 289,729 + +1.2 289,730 - -0.3 289,730 - +0.1 289,812 + +2.1 289,812 + -0.2 289,812 + +0.6 289,812 + -0.8 289,812 + -1.0 289,812 + -0.6 289,812 + -0.0 289,812 + +0.4 289,812 + -1.0 289,813 - +1.9 289,813 - -1.2 289,813 - -0.1 289,813 - -0.5 289,813 - +0.8 289,813 - -1.6 289,813 - -0.7 289,813 - -0.9 289,813 - +1.0 289,813 - -2.2 289,855 + LRK53_RS01155 0.30 +0.4 289,855 + LRK53_RS01155 0.30 -0.1 289,856 - LRK53_RS01155 0.31 +0.5 289,856 - LRK53_RS01155 0.31 -0.6 289,856 - LRK53_RS01155 0.31 -0.1 289,856 - LRK53_RS01155 0.31 -0.0 289,856 - LRK53_RS01155 0.31 +1.9 289,957 + LRK53_RS01155 0.55 +1.2 289,957 + LRK53_RS01155 0.55 -1.9 289,957 + LRK53_RS01155 0.55 +0.1 289,958 - LRK53_RS01155 0.55 +1.1 289,958 - LRK53_RS01155 0.55 +0.7 289,958 - LRK53_RS01155 0.55 -0.0 289,966 + LRK53_RS01155 0.57 +2.3 289,966 + LRK53_RS01155 0.57 -0.6 289,966 + LRK53_RS01155 0.57 -2.3 289,966 + LRK53_RS01155 0.57 -0.5 289,966 + LRK53_RS01155 0.57 +1.4 289,967 - LRK53_RS01155 0.57 -1.1 289,967 - LRK53_RS01155 0.57 -1.5 290,578 - LRK53_RS01160 0.54 +0.7 290,586 - LRK53_RS01160 0.55 +0.3 290,586 - LRK53_RS01160 0.55 -0.4 290,697 + LRK53_RS01160 0.68 +1.4 290,697 + LRK53_RS01160 0.68 +0.8 290,698 - LRK53_RS01160 0.69 -0.6 290,698 - LRK53_RS01160 0.69 -1.3 290,850 + LRK53_RS01160 0.87 -1.0 290,850 + LRK53_RS01160 0.87 -1.1 290,850 + LRK53_RS01160 0.87 +1.2 290,850 + LRK53_RS01160 0.87 +0.1 290,850 + LRK53_RS01160 0.87 +0.1 290,850 + LRK53_RS01160 0.87 -0.6 290,850 + LRK53_RS01160 0.87 -1.6 290,850 + LRK53_RS01160 0.87 +0.3 290,850 + LRK53_RS01160 0.87 +0.8 290,850 + LRK53_RS01160 0.87 -0.5 290,850 + LRK53_RS01160 0.87 +1.2 290,850 + LRK53_RS01160 0.87 -0.9 290,850 + LRK53_RS01160 0.87 +0.7 290,850 + LRK53_RS01160 0.87 +0.4 290,851 - LRK53_RS01160 0.87 -0.6 290,851 - LRK53_RS01160 0.87 +0.2 290,851 - LRK53_RS01160 0.87 -0.1 290,851 - LRK53_RS01160 0.87 -0.1 290,851 - LRK53_RS01160 0.87 -0.1 290,851 - LRK53_RS01160 0.87 -0.7 290,851 - LRK53_RS01160 0.87 +1.2 290,851 - LRK53_RS01160 0.87 -1.2 290,851 - LRK53_RS01160 0.87 -0.6 290,851 - LRK53_RS01160 0.87 -0.2 290,851 - LRK53_RS01160 0.87 +1.5 290,859 + LRK53_RS01160 0.88 -1.6 290,859 + LRK53_RS01160 0.88 -1.4 290,859 + LRK53_RS01160 0.88 +1.0 290,859 + LRK53_RS01160 0.88 -2.5 290,859 + LRK53_RS01160 0.88 +0.2 290,860 - LRK53_RS01160 0.88 +1.4 290,860 - LRK53_RS01160 0.88 +1.3 290,860 - LRK53_RS01160 0.88 -0.3 290,964 + -0.0 290,964 + +0.2 290,964 + -1.1 290,964 + -0.5 290,964 + -0.7 290,964 + +1.2 290,964 + -0.3 290,964 + -1.3 290,964 + -0.2 290,964 + -0.6 290,965 - +0.2 290,965 - -0.1 290,965 - +0.5 290,965 - -1.1 290,965 - -1.2 290,965 - -1.3 290,965 - -0.7 290,965 - +0.3 290,965 - +0.1 290,965 - -0.0 290,965 - +0.1 290,965 - -0.9 290,965 - +0.3 290,965 - +1.4 290,965 - -1.5 290,965 - +1.8 290,965 - +1.3 290,965 - -0.1 290,991 + -0.4 290,991 + -0.2 290,991 + +0.7 290,991 + -2.5 290,991 + -0.2 290,991 + -2.1 290,992 - +0.4 290,992 - +0.5 290,992 - +1.2 290,992 - -0.3 290,992 - +0.2 290,992 - -1.6 290,992 - +0.1 290,992 - -0.1 290,992 - +0.2 290,992 - -0.4 290,992 - -2.3 290,992 - +0.3 291,069 + -0.8 291,069 + -0.9 291,069 + -1.2 291,069 + +1.5 291,069 + -1.4 291,069 + +0.2 291,069 + +0.4 291,069 + -0.4 291,069 + -0.1 291,069 + -1.0 291,069 + +1.5 291,069 + -1.0 291,069 + -2.7 291,069 + -0.5 291,069 + -0.2 291,069 + +0.6 291,069 + -0.0 291,069 + -0.8 291,069 + +1.2 291,070 - -0.1 291,070 - -2.6 291,070 - +0.4 291,070 - +1.7 291,070 - -0.0 291,070 - +1.1 291,070 - -0.0 291,070 - +0.1 291,070 - -0.9 291,070 - -0.7 291,070 - -0.1 291,070 - -0.0
Or see this region's nucleotide sequence