Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS01095 and LRK53_RS01100 are separated by 50 nucleotides LRK53_RS01100 and LRK53_RS01105 are separated by 73 nucleotides LRK53_RS01105 and LRK53_RS01110 are separated by 185 nucleotides
LRK53_RS01095: LRK53_RS01095 - lipid A biosynthesis acyltransferase, at 273,140 to 274,033
_RS01095
LRK53_RS01100: LRK53_RS01100 - pteridine reductase, at 274,084 to 274,830
_RS01100
LRK53_RS01105: LRK53_RS01105 - hypothetical protein, at 274,904 to 275,668
_RS01105
LRK53_RS01110: LRK53_RS01110 - TonB-dependent receptor, at 275,854 to 278,034
_RS01110
Position (kb) 274
275
276 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 273.965 kb on + strand at 273.965 kb on + strand at 273.965 kb on + strand at 273.966 kb on - strand at 273.966 kb on - strand at 273.966 kb on - strand at 273.966 kb on - strand at 273.966 kb on - strand at 273.976 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 274.014 kb on - strand at 274.136 kb on + strand at 274.136 kb on + strand at 274.136 kb on + strand at 274.136 kb on + strand at 274.136 kb on + strand at 274.361 kb on + strand, within LRK53_RS01100 at 274.361 kb on + strand, within LRK53_RS01100 at 274.361 kb on + strand, within LRK53_RS01100 at 274.361 kb on + strand, within LRK53_RS01100 at 274.361 kb on + strand, within LRK53_RS01100 at 274.361 kb on + strand, within LRK53_RS01100 at 274.361 kb on + strand, within LRK53_RS01100 at 274.361 kb on + strand, within LRK53_RS01100 at 274.361 kb on + strand, within LRK53_RS01100 at 274.361 kb on + strand, within LRK53_RS01100 at 274.361 kb on + strand, within LRK53_RS01100 at 274.362 kb on - strand, within LRK53_RS01100 at 274.362 kb on - strand, within LRK53_RS01100 at 274.362 kb on - strand, within LRK53_RS01100 at 274.362 kb on - strand, within LRK53_RS01100 at 274.362 kb on - strand, within LRK53_RS01100 at 274.362 kb on - strand, within LRK53_RS01100 at 274.362 kb on - strand, within LRK53_RS01100 at 274.362 kb on - strand, within LRK53_RS01100 at 274.362 kb on - strand, within LRK53_RS01100 at 274.394 kb on + strand, within LRK53_RS01100 at 274.394 kb on + strand, within LRK53_RS01100 at 274.394 kb on + strand, within LRK53_RS01100 at 274.395 kb on - strand, within LRK53_RS01100 at 274.395 kb on - strand, within LRK53_RS01100 at 274.580 kb on + strand, within LRK53_RS01100 at 274.580 kb on + strand, within LRK53_RS01100 at 274.581 kb on - strand, within LRK53_RS01100 at 274.581 kb on - strand, within LRK53_RS01100 at 274.591 kb on + strand, within LRK53_RS01100 at 274.591 kb on + strand, within LRK53_RS01100 at 274.591 kb on + strand, within LRK53_RS01100 at 274.591 kb on + strand, within LRK53_RS01100 at 274.591 kb on + strand, within LRK53_RS01100 at 274.592 kb on - strand, within LRK53_RS01100 at 274.592 kb on - strand, within LRK53_RS01100 at 274.592 kb on - strand, within LRK53_RS01100 at 274.592 kb on - strand, within LRK53_RS01100 at 274.592 kb on - strand, within LRK53_RS01100 at 274.592 kb on - strand, within LRK53_RS01100 at 274.719 kb on - strand, within LRK53_RS01100 at 274.719 kb on - strand, within LRK53_RS01100 at 275.127 kb on + strand, within LRK53_RS01105 at 275.127 kb on + strand, within LRK53_RS01105 at 275.127 kb on + strand, within LRK53_RS01105 at 275.127 kb on + strand, within LRK53_RS01105 at 275.127 kb on + strand, within LRK53_RS01105 at 275.128 kb on - strand, within LRK53_RS01105 at 275.128 kb on - strand, within LRK53_RS01105 at 275.130 kb on + strand, within LRK53_RS01105 at 275.130 kb on + strand, within LRK53_RS01105 at 275.130 kb on + strand, within LRK53_RS01105 at 275.130 kb on + strand, within LRK53_RS01105 at 275.131 kb on - strand, within LRK53_RS01105 at 275.131 kb on - strand, within LRK53_RS01105 at 275.131 kb on - strand, within LRK53_RS01105 at 275.131 kb on - strand, within LRK53_RS01105 at 275.136 kb on + strand, within LRK53_RS01105 at 275.136 kb on + strand, within LRK53_RS01105 at 275.136 kb on + strand, within LRK53_RS01105 at 275.137 kb on - strand, within LRK53_RS01105 at 275.137 kb on - strand, within LRK53_RS01105 at 275.137 kb on - strand, within LRK53_RS01105 at 275.231 kb on + strand, within LRK53_RS01105 at 275.250 kb on + strand, within LRK53_RS01105 at 275.250 kb on + strand, within LRK53_RS01105 at 275.250 kb on + strand, within LRK53_RS01105 at 275.251 kb on - strand, within LRK53_RS01105 at 275.251 kb on - strand, within LRK53_RS01105 at 275.251 kb on - strand, within LRK53_RS01105 at 275.251 kb on - strand, within LRK53_RS01105 at 275.251 kb on - strand, within LRK53_RS01105 at 275.251 kb on - strand, within LRK53_RS01105 at 275.251 kb on - strand, within LRK53_RS01105 at 275.718 kb on - strand at 275.718 kb on - strand at 275.799 kb on + strand at 275.800 kb on - strand at 275.800 kb on - strand at 275.806 kb on - strand at 275.807 kb on + strand at 275.808 kb on - strand at 275.834 kb on + strand at 275.834 kb on + strand at 275.834 kb on + strand at 275.834 kb on + strand at 275.834 kb on + strand at 275.834 kb on + strand at 275.834 kb on + strand at 275.834 kb on + strand at 275.834 kb on + strand at 275.834 kb on + strand at 275.834 kb on + strand at 275.834 kb on + strand at 275.834 kb on + strand at 275.835 kb on - strand at 275.835 kb on - strand at 275.835 kb on - strand at 275.835 kb on - strand at 275.835 kb on - strand at 275.835 kb on - strand at 275.835 kb on - strand at 275.835 kb on - strand at 275.835 kb on - strand at 275.898 kb on + strand at 275.898 kb on + strand at 275.898 kb on + strand at 275.899 kb on - strand at 275.899 kb on - strand at 275.899 kb on - strand at 276.094 kb on + strand, within LRK53_RS01110 at 276.094 kb on + strand, within LRK53_RS01110 at 276.094 kb on + strand, within LRK53_RS01110 at 276.094 kb on + strand, within LRK53_RS01110 at 276.095 kb on - strand, within LRK53_RS01110 at 276.095 kb on - strand, within LRK53_RS01110 at 276.095 kb on - strand, within LRK53_RS01110 at 276.095 kb on - strand, within LRK53_RS01110 at 276.095 kb on - strand, within LRK53_RS01110 at 276.095 kb on - strand, within LRK53_RS01110 at 276.095 kb on - strand, within LRK53_RS01110 at 276.095 kb on - strand, within LRK53_RS01110 at 276.095 kb on - strand, within LRK53_RS01110 at 276.193 kb on + strand, within LRK53_RS01110 at 276.193 kb on + strand, within LRK53_RS01110 at 276.193 kb on + strand, within LRK53_RS01110 at 276.193 kb on + strand, within LRK53_RS01110 at 276.235 kb on + strand, within LRK53_RS01110 at 276.236 kb on - strand, within LRK53_RS01110 at 276.346 kb on + strand, within LRK53_RS01110 at 276.347 kb on - strand, within LRK53_RS01110 at 276.347 kb on - strand, within LRK53_RS01110 at 276.347 kb on - strand, within LRK53_RS01110 at 276.439 kb on - strand, within LRK53_RS01110 at 276.511 kb on + strand, within LRK53_RS01110 at 276.511 kb on + strand, within LRK53_RS01110 at 276.511 kb on + strand, within LRK53_RS01110 at 276.511 kb on + strand, within LRK53_RS01110 at 276.511 kb on + strand, within LRK53_RS01110 at 276.511 kb on + strand, within LRK53_RS01110 at 276.511 kb on + strand, within LRK53_RS01110 at 276.511 kb on + strand, within LRK53_RS01110 at 276.511 kb on + strand, within LRK53_RS01110 at 276.512 kb on - strand, within LRK53_RS01110 at 276.512 kb on - strand, within LRK53_RS01110 at 276.512 kb on - strand, within LRK53_RS01110 at 276.512 kb on - strand, within LRK53_RS01110 at 276.512 kb on - strand, within LRK53_RS01110 at 276.512 kb on - strand, within LRK53_RS01110 at 276.512 kb on - strand, within LRK53_RS01110 at 276.512 kb on - strand, within LRK53_RS01110 at 276.512 kb on - strand, within LRK53_RS01110 at 276.512 kb on - strand, within LRK53_RS01110 at 276.512 kb on - strand, within LRK53_RS01110 at 276.512 kb on - strand, within LRK53_RS01110 at 276.607 kb on + strand, within LRK53_RS01110 at 276.608 kb on - strand, within LRK53_RS01110 at 276.608 kb on - strand, within LRK53_RS01110 at 276.664 kb on + strand, within LRK53_RS01110
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 273,965 + +1.4 273,965 + -2.0 273,965 + -1.2 273,966 - +0.9 273,966 - +2.8 273,966 - -0.0 273,966 - -1.0 273,966 - +1.5 273,976 + +1.0 273,977 + -1.3 273,977 + -0.3 273,977 + -0.6 273,977 + -0.2 273,977 + -0.6 273,977 + -1.2 273,977 + -1.0 273,977 + +0.8 273,977 + -1.0 273,977 + -0.7 273,977 + +0.4 273,977 + -3.4 273,977 + +0.8 273,977 + +0.5 273,977 + -0.9 273,977 + -0.8 273,977 + -2.3 273,977 + -2.1 273,977 + -2.5 273,977 + +0.7 273,977 + -0.8 273,977 + -0.2 273,977 + -1.3 273,977 + -0.9 273,977 + -1.4 273,977 + -1.2 273,977 + -0.6 273,977 + -0.9 273,977 + +1.3 273,977 + -0.6 273,977 + -0.0 273,978 - -1.1 273,978 - -0.6 273,978 - -2.4 273,978 - -1.1 273,978 - +0.8 273,978 - -2.1 273,978 - -0.0 273,978 - +0.6 273,978 - -0.4 273,978 - -0.4 273,978 - -1.3 273,978 - +1.2 273,978 - -0.0 273,978 - -1.7 273,978 - +0.7 273,978 - -2.3 273,978 - -0.6 273,978 - +1.7 273,978 - +1.5 273,978 - -0.0 273,978 - -0.4 273,978 - -1.5 273,978 - -0.3 273,978 - -0.6 274,014 - -0.2 274,136 + -0.7 274,136 + -0.7 274,136 + -1.2 274,136 + -0.9 274,136 + +1.3 274,361 + LRK53_RS01100 0.37 -2.0 274,361 + LRK53_RS01100 0.37 +0.4 274,361 + LRK53_RS01100 0.37 +0.7 274,361 + LRK53_RS01100 0.37 +1.1 274,361 + LRK53_RS01100 0.37 -0.7 274,361 + LRK53_RS01100 0.37 +0.9 274,361 + LRK53_RS01100 0.37 -1.0 274,361 + LRK53_RS01100 0.37 +0.8 274,361 + LRK53_RS01100 0.37 -1.0 274,361 + LRK53_RS01100 0.37 -0.7 274,361 + LRK53_RS01100 0.37 -0.8 274,362 - LRK53_RS01100 0.37 +0.2 274,362 - LRK53_RS01100 0.37 +0.0 274,362 - LRK53_RS01100 0.37 -0.8 274,362 - LRK53_RS01100 0.37 -0.2 274,362 - LRK53_RS01100 0.37 -1.3 274,362 - LRK53_RS01100 0.37 +0.3 274,362 - LRK53_RS01100 0.37 +0.2 274,362 - LRK53_RS01100 0.37 +0.3 274,362 - LRK53_RS01100 0.37 +1.3 274,394 + LRK53_RS01100 0.41 +1.4 274,394 + LRK53_RS01100 0.41 +1.6 274,394 + LRK53_RS01100 0.41 +0.3 274,395 - LRK53_RS01100 0.42 -1.6 274,395 - LRK53_RS01100 0.42 -0.0 274,580 + LRK53_RS01100 0.66 -1.3 274,580 + LRK53_RS01100 0.66 -0.2 274,581 - LRK53_RS01100 0.67 -0.4 274,581 - LRK53_RS01100 0.67 +1.0 274,591 + LRK53_RS01100 0.68 +0.4 274,591 + LRK53_RS01100 0.68 -1.1 274,591 + LRK53_RS01100 0.68 +0.5 274,591 + LRK53_RS01100 0.68 +0.1 274,591 + LRK53_RS01100 0.68 -1.1 274,592 - LRK53_RS01100 0.68 +0.2 274,592 - LRK53_RS01100 0.68 -0.5 274,592 - LRK53_RS01100 0.68 -0.2 274,592 - LRK53_RS01100 0.68 -0.4 274,592 - LRK53_RS01100 0.68 +0.6 274,592 - LRK53_RS01100 0.68 +1.5 274,719 - LRK53_RS01100 0.85 -0.6 274,719 - LRK53_RS01100 0.85 -0.0 275,127 + LRK53_RS01105 0.29 -0.4 275,127 + LRK53_RS01105 0.29 -1.6 275,127 + LRK53_RS01105 0.29 +1.4 275,127 + LRK53_RS01105 0.29 -0.0 275,127 + LRK53_RS01105 0.29 +3.0 275,128 - LRK53_RS01105 0.29 -1.4 275,128 - LRK53_RS01105 0.29 +1.8 275,130 + LRK53_RS01105 0.30 -0.5 275,130 + LRK53_RS01105 0.30 +0.4 275,130 + LRK53_RS01105 0.30 -0.5 275,130 + LRK53_RS01105 0.30 +0.2 275,131 - LRK53_RS01105 0.30 -0.1 275,131 - LRK53_RS01105 0.30 +0.8 275,131 - LRK53_RS01105 0.30 -0.6 275,131 - LRK53_RS01105 0.30 -0.0 275,136 + LRK53_RS01105 0.30 -0.5 275,136 + LRK53_RS01105 0.30 -0.7 275,136 + LRK53_RS01105 0.30 +0.5 275,137 - LRK53_RS01105 0.30 -1.0 275,137 - LRK53_RS01105 0.30 +0.8 275,137 - LRK53_RS01105 0.30 -2.2 275,231 + LRK53_RS01105 0.43 +0.6 275,250 + LRK53_RS01105 0.45 -0.8 275,250 + LRK53_RS01105 0.45 +1.3 275,250 + LRK53_RS01105 0.45 +0.0 275,251 - LRK53_RS01105 0.45 +0.7 275,251 - LRK53_RS01105 0.45 +0.1 275,251 - LRK53_RS01105 0.45 +0.4 275,251 - LRK53_RS01105 0.45 -0.0 275,251 - LRK53_RS01105 0.45 -0.2 275,251 - LRK53_RS01105 0.45 +1.2 275,251 - LRK53_RS01105 0.45 +1.1 275,718 - -1.1 275,718 - -0.9 275,799 + -1.3 275,800 - -1.1 275,800 - -0.6 275,806 - +0.3 275,807 + +1.0 275,808 - -0.8 275,834 + +2.3 275,834 + -0.7 275,834 + +0.2 275,834 + +0.2 275,834 + -2.3 275,834 + +0.2 275,834 + -0.6 275,834 + -0.6 275,834 + -0.9 275,834 + -0.3 275,834 + +2.5 275,834 + -0.4 275,834 + -0.1 275,835 - +0.2 275,835 - -0.3 275,835 - +0.2 275,835 - -0.6 275,835 - -0.3 275,835 - -0.2 275,835 - +0.2 275,835 - +3.6 275,835 - +0.0 275,898 + -1.1 275,898 + -1.1 275,898 + +1.5 275,899 - -2.1 275,899 - +0.5 275,899 - +0.4 276,094 + LRK53_RS01110 0.11 -0.2 276,094 + LRK53_RS01110 0.11 +0.2 276,094 + LRK53_RS01110 0.11 +0.4 276,094 + LRK53_RS01110 0.11 -1.6 276,095 - LRK53_RS01110 0.11 +0.0 276,095 - LRK53_RS01110 0.11 +0.4 276,095 - LRK53_RS01110 0.11 +0.9 276,095 - LRK53_RS01110 0.11 +1.1 276,095 - LRK53_RS01110 0.11 +2.2 276,095 - LRK53_RS01110 0.11 -2.8 276,095 - LRK53_RS01110 0.11 +0.6 276,095 - LRK53_RS01110 0.11 +2.2 276,095 - LRK53_RS01110 0.11 +0.7 276,193 + LRK53_RS01110 0.16 -0.7 276,193 + LRK53_RS01110 0.16 -1.0 276,193 + LRK53_RS01110 0.16 -1.0 276,193 + LRK53_RS01110 0.16 +0.7 276,235 + LRK53_RS01110 0.17 -0.1 276,236 - LRK53_RS01110 0.18 +0.7 276,346 + LRK53_RS01110 0.23 +0.1 276,347 - LRK53_RS01110 0.23 +1.2 276,347 - LRK53_RS01110 0.23 -0.3 276,347 - LRK53_RS01110 0.23 +0.7 276,439 - LRK53_RS01110 0.27 -2.5 276,511 + LRK53_RS01110 0.30 -0.7 276,511 + LRK53_RS01110 0.30 +0.4 276,511 + LRK53_RS01110 0.30 -0.0 276,511 + LRK53_RS01110 0.30 +0.5 276,511 + LRK53_RS01110 0.30 -1.0 276,511 + LRK53_RS01110 0.30 -1.3 276,511 + LRK53_RS01110 0.30 +2.4 276,511 + LRK53_RS01110 0.30 +0.1 276,511 + LRK53_RS01110 0.30 +0.7 276,512 - LRK53_RS01110 0.30 +2.6 276,512 - LRK53_RS01110 0.30 -0.8 276,512 - LRK53_RS01110 0.30 -0.6 276,512 - LRK53_RS01110 0.30 +1.0 276,512 - LRK53_RS01110 0.30 -0.4 276,512 - LRK53_RS01110 0.30 -0.9 276,512 - LRK53_RS01110 0.30 +1.4 276,512 - LRK53_RS01110 0.30 +0.5 276,512 - LRK53_RS01110 0.30 +0.8 276,512 - LRK53_RS01110 0.30 -1.8 276,512 - LRK53_RS01110 0.30 +0.4 276,512 - LRK53_RS01110 0.30 -0.6 276,607 + LRK53_RS01110 0.35 +2.4 276,608 - LRK53_RS01110 0.35 +0.1 276,608 - LRK53_RS01110 0.35 -1.4 276,664 + LRK53_RS01110 0.37 -1.8
Or see this region's nucleotide sequence