Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS01085 and LRK53_RS01090 are separated by 169 nucleotides LRK53_RS01090 and LRK53_RS01095 are separated by 105 nucleotides LRK53_RS01095 and LRK53_RS01100 are separated by 50 nucleotides LRK53_RS01100 and LRK53_RS01105 are separated by 73 nucleotides
LRK53_RS01085: LRK53_RS01085 - RNA polymerase sigma factor RpoD, at 270,550 to 272,424
_RS01085
LRK53_RS01090: LRK53_RS01090 - D-aminoacyl-tRNA deacylase, at 272,594 to 273,034
_RS01090
LRK53_RS01095: LRK53_RS01095 - lipid A biosynthesis acyltransferase, at 273,140 to 274,033
_RS01095
LRK53_RS01100: LRK53_RS01100 - pteridine reductase, at 274,084 to 274,830
_RS01100
LRK53_RS01105: LRK53_RS01105 - hypothetical protein, at 274,904 to 275,668
_RS01105
Position (kb) 273
274
275 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 272.462 kb on - strand at 272.650 kb on + strand, within LRK53_RS01090 at 272.650 kb on + strand, within LRK53_RS01090 at 272.650 kb on + strand, within LRK53_RS01090 at 272.651 kb on - strand, within LRK53_RS01090 at 272.651 kb on - strand, within LRK53_RS01090 at 272.651 kb on - strand, within LRK53_RS01090 at 272.651 kb on - strand, within LRK53_RS01090 at 272.651 kb on - strand, within LRK53_RS01090 at 272.651 kb on - strand, within LRK53_RS01090 at 272.651 kb on - strand, within LRK53_RS01090 at 272.651 kb on - strand, within LRK53_RS01090 at 273.011 kb on + strand at 273.011 kb on + strand at 273.011 kb on + strand at 273.011 kb on + strand at 273.011 kb on + strand at 273.011 kb on + strand at 273.011 kb on + strand at 273.011 kb on + strand at 273.012 kb on - strand at 273.012 kb on - strand at 273.012 kb on - strand at 273.092 kb on + strand at 273.092 kb on + strand at 273.092 kb on + strand at 273.092 kb on + strand at 273.092 kb on + strand at 273.093 kb on - strand at 273.093 kb on - strand at 273.093 kb on - strand at 273.093 kb on - strand at 273.127 kb on + strand at 273.127 kb on + strand at 273.128 kb on - strand at 273.128 kb on - strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.156 kb on - strand at 273.156 kb on - strand at 273.156 kb on - strand at 273.156 kb on - strand at 273.156 kb on - strand at 273.156 kb on - strand at 273.156 kb on - strand at 273.156 kb on - strand at 273.156 kb on - strand at 273.156 kb on - strand at 273.156 kb on - strand at 273.156 kb on - strand at 273.156 kb on - strand at 273.156 kb on - strand at 273.156 kb on - strand at 273.164 kb on + strand at 273.164 kb on + strand at 273.164 kb on + strand at 273.164 kb on + strand at 273.164 kb on + strand at 273.164 kb on + strand at 273.164 kb on + strand at 273.164 kb on + strand at 273.164 kb on + strand at 273.164 kb on + strand at 273.164 kb on + strand at 273.164 kb on + strand at 273.164 kb on + strand at 273.165 kb on - strand at 273.165 kb on - strand at 273.165 kb on - strand at 273.165 kb on - strand at 273.165 kb on - strand at 273.165 kb on - strand at 273.165 kb on - strand at 273.165 kb on - strand at 273.165 kb on - strand at 273.521 kb on + strand, within LRK53_RS01095 at 273.521 kb on + strand, within LRK53_RS01095 at 273.521 kb on + strand, within LRK53_RS01095 at 273.521 kb on + strand, within LRK53_RS01095 at 273.522 kb on - strand, within LRK53_RS01095 at 273.522 kb on - strand, within LRK53_RS01095 at 273.522 kb on - strand, within LRK53_RS01095 at 273.522 kb on - strand, within LRK53_RS01095 at 273.522 kb on - strand, within LRK53_RS01095 at 273.522 kb on - strand, within LRK53_RS01095 at 273.522 kb on - strand, within LRK53_RS01095 at 273.662 kb on + strand, within LRK53_RS01095 at 273.662 kb on + strand, within LRK53_RS01095 at 273.662 kb on + strand, within LRK53_RS01095 at 273.662 kb on + strand, within LRK53_RS01095 at 273.662 kb on + strand, within LRK53_RS01095 at 273.662 kb on + strand, within LRK53_RS01095 at 273.662 kb on + strand, within LRK53_RS01095 at 273.662 kb on + strand, within LRK53_RS01095 at 273.662 kb on + strand, within LRK53_RS01095 at 273.662 kb on + strand, within LRK53_RS01095 at 273.663 kb on - strand, within LRK53_RS01095 at 273.663 kb on - strand, within LRK53_RS01095 at 273.663 kb on - strand, within LRK53_RS01095 at 273.663 kb on - strand, within LRK53_RS01095 at 273.663 kb on - strand, within LRK53_RS01095 at 273.663 kb on - strand, within LRK53_RS01095 at 273.815 kb on + strand, within LRK53_RS01095 at 273.815 kb on + strand, within LRK53_RS01095 at 273.815 kb on + strand, within LRK53_RS01095 at 273.815 kb on + strand, within LRK53_RS01095 at 273.815 kb on + strand, within LRK53_RS01095 at 273.815 kb on + strand, within LRK53_RS01095 at 273.815 kb on + strand, within LRK53_RS01095 at 273.815 kb on + strand, within LRK53_RS01095 at 273.815 kb on + strand, within LRK53_RS01095 at 273.816 kb on - strand, within LRK53_RS01095 at 273.816 kb on - strand, within LRK53_RS01095 at 273.816 kb on - strand, within LRK53_RS01095 at 273.816 kb on - strand, within LRK53_RS01095 at 273.816 kb on - strand, within LRK53_RS01095 at 273.816 kb on - strand, within LRK53_RS01095 at 273.816 kb on - strand, within LRK53_RS01095 at 273.965 kb on + strand at 273.965 kb on + strand at 273.965 kb on + strand at 273.966 kb on - strand at 273.966 kb on - strand at 273.966 kb on - strand at 273.966 kb on - strand at 273.966 kb on - strand at 273.976 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 274.014 kb on - strand at 274.136 kb on + strand at 274.136 kb on + strand at 274.136 kb on + strand at 274.136 kb on + strand at 274.136 kb on + strand at 274.361 kb on + strand, within LRK53_RS01100 at 274.361 kb on + strand, within LRK53_RS01100 at 274.361 kb on + strand, within LRK53_RS01100 at 274.361 kb on + strand, within LRK53_RS01100 at 274.361 kb on + strand, within LRK53_RS01100 at 274.361 kb on + strand, within LRK53_RS01100 at 274.361 kb on + strand, within LRK53_RS01100 at 274.361 kb on + strand, within LRK53_RS01100 at 274.361 kb on + strand, within LRK53_RS01100 at 274.361 kb on + strand, within LRK53_RS01100 at 274.361 kb on + strand, within LRK53_RS01100 at 274.362 kb on - strand, within LRK53_RS01100 at 274.362 kb on - strand, within LRK53_RS01100 at 274.362 kb on - strand, within LRK53_RS01100 at 274.362 kb on - strand, within LRK53_RS01100 at 274.362 kb on - strand, within LRK53_RS01100 at 274.362 kb on - strand, within LRK53_RS01100 at 274.362 kb on - strand, within LRK53_RS01100 at 274.362 kb on - strand, within LRK53_RS01100 at 274.362 kb on - strand, within LRK53_RS01100 at 274.394 kb on + strand, within LRK53_RS01100 at 274.394 kb on + strand, within LRK53_RS01100 at 274.394 kb on + strand, within LRK53_RS01100 at 274.395 kb on - strand, within LRK53_RS01100 at 274.395 kb on - strand, within LRK53_RS01100 at 274.580 kb on + strand, within LRK53_RS01100 at 274.580 kb on + strand, within LRK53_RS01100 at 274.581 kb on - strand, within LRK53_RS01100 at 274.581 kb on - strand, within LRK53_RS01100 at 274.591 kb on + strand, within LRK53_RS01100 at 274.591 kb on + strand, within LRK53_RS01100 at 274.591 kb on + strand, within LRK53_RS01100 at 274.591 kb on + strand, within LRK53_RS01100 at 274.591 kb on + strand, within LRK53_RS01100 at 274.592 kb on - strand, within LRK53_RS01100 at 274.592 kb on - strand, within LRK53_RS01100 at 274.592 kb on - strand, within LRK53_RS01100 at 274.592 kb on - strand, within LRK53_RS01100 at 274.592 kb on - strand, within LRK53_RS01100 at 274.592 kb on - strand, within LRK53_RS01100 at 274.719 kb on - strand, within LRK53_RS01100 at 274.719 kb on - strand, within LRK53_RS01100
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 272,462 - -1.9 272,650 + LRK53_RS01090 0.13 -0.6 272,650 + LRK53_RS01090 0.13 -2.3 272,650 + LRK53_RS01090 0.13 +1.5 272,651 - LRK53_RS01090 0.13 -0.2 272,651 - LRK53_RS01090 0.13 +1.4 272,651 - LRK53_RS01090 0.13 +1.3 272,651 - LRK53_RS01090 0.13 +3.1 272,651 - LRK53_RS01090 0.13 -0.4 272,651 - LRK53_RS01090 0.13 +0.3 272,651 - LRK53_RS01090 0.13 -0.9 272,651 - LRK53_RS01090 0.13 -0.8 273,011 + +0.9 273,011 + +1.2 273,011 + +2.4 273,011 + -0.6 273,011 + -0.0 273,011 + +0.1 273,011 + -1.3 273,011 + -1.4 273,012 - +0.7 273,012 - -0.2 273,012 - +1.2 273,092 + -1.4 273,092 + +0.0 273,092 + +0.2 273,092 + -0.9 273,092 + -1.0 273,093 - +1.2 273,093 - -0.4 273,093 - -1.4 273,093 - -0.4 273,127 + +1.8 273,127 + -1.4 273,128 - -0.6 273,128 - -0.6 273,155 + +1.5 273,155 + -0.3 273,155 + +0.2 273,155 + -0.2 273,155 + -0.2 273,155 + -1.1 273,155 + +0.1 273,155 + -1.7 273,155 + +1.9 273,155 + -0.8 273,155 + +2.4 273,155 + -0.2 273,155 + -0.7 273,155 + -0.1 273,155 + +0.3 273,155 + -1.3 273,155 + -0.2 273,155 + +1.0 273,155 + -1.0 273,156 - -0.9 273,156 - -0.6 273,156 - -0.5 273,156 - -1.7 273,156 - -0.3 273,156 - -1.6 273,156 - +0.8 273,156 - +0.4 273,156 - +0.2 273,156 - -0.2 273,156 - -1.3 273,156 - -2.0 273,156 - -2.0 273,156 - -1.0 273,156 - -0.9 273,164 + -0.8 273,164 + +2.4 273,164 + -0.4 273,164 + -1.3 273,164 + -0.8 273,164 + -2.9 273,164 + -1.1 273,164 + +1.1 273,164 + -0.8 273,164 + +0.4 273,164 + +0.0 273,164 + -0.9 273,164 + -0.8 273,165 - +1.2 273,165 - -0.0 273,165 - +1.6 273,165 - +0.8 273,165 - -0.4 273,165 - +0.6 273,165 - -0.4 273,165 - +0.2 273,165 - +0.4 273,521 + LRK53_RS01095 0.43 -0.4 273,521 + LRK53_RS01095 0.43 +0.6 273,521 + LRK53_RS01095 0.43 +0.1 273,521 + LRK53_RS01095 0.43 -0.2 273,522 - LRK53_RS01095 0.43 -1.1 273,522 - LRK53_RS01095 0.43 +0.4 273,522 - LRK53_RS01095 0.43 +1.4 273,522 - LRK53_RS01095 0.43 -0.0 273,522 - LRK53_RS01095 0.43 -0.0 273,522 - LRK53_RS01095 0.43 +0.2 273,522 - LRK53_RS01095 0.43 -0.4 273,662 + LRK53_RS01095 0.58 -1.9 273,662 + LRK53_RS01095 0.58 -0.9 273,662 + LRK53_RS01095 0.58 +0.2 273,662 + LRK53_RS01095 0.58 -1.1 273,662 + LRK53_RS01095 0.58 -1.1 273,662 + LRK53_RS01095 0.58 +0.7 273,662 + LRK53_RS01095 0.58 -0.6 273,662 + LRK53_RS01095 0.58 -1.0 273,662 + LRK53_RS01095 0.58 -0.9 273,662 + LRK53_RS01095 0.58 -0.2 273,663 - LRK53_RS01095 0.59 -1.0 273,663 - LRK53_RS01095 0.59 -1.8 273,663 - LRK53_RS01095 0.59 -1.1 273,663 - LRK53_RS01095 0.59 -0.4 273,663 - LRK53_RS01095 0.59 -1.2 273,663 - LRK53_RS01095 0.59 -0.4 273,815 + LRK53_RS01095 0.76 -1.4 273,815 + LRK53_RS01095 0.76 -1.6 273,815 + LRK53_RS01095 0.76 -2.0 273,815 + LRK53_RS01095 0.76 -1.2 273,815 + LRK53_RS01095 0.76 +1.6 273,815 + LRK53_RS01095 0.76 -0.4 273,815 + LRK53_RS01095 0.76 +0.4 273,815 + LRK53_RS01095 0.76 -1.6 273,815 + LRK53_RS01095 0.76 +0.1 273,816 - LRK53_RS01095 0.76 +0.2 273,816 - LRK53_RS01095 0.76 +0.1 273,816 - LRK53_RS01095 0.76 +0.3 273,816 - LRK53_RS01095 0.76 -1.4 273,816 - LRK53_RS01095 0.76 +1.0 273,816 - LRK53_RS01095 0.76 -1.5 273,816 - LRK53_RS01095 0.76 -1.2 273,965 + +1.4 273,965 + -2.0 273,965 + -1.2 273,966 - +0.9 273,966 - +2.8 273,966 - -0.0 273,966 - -1.0 273,966 - +1.5 273,976 + +1.0 273,977 + -1.3 273,977 + -0.3 273,977 + -0.6 273,977 + -0.2 273,977 + -0.6 273,977 + -1.2 273,977 + -1.0 273,977 + +0.8 273,977 + -1.0 273,977 + -0.7 273,977 + +0.4 273,977 + -3.4 273,977 + +0.8 273,977 + +0.5 273,977 + -0.9 273,977 + -0.8 273,977 + -2.3 273,977 + -2.1 273,977 + -2.5 273,977 + +0.7 273,977 + -0.8 273,977 + -0.2 273,977 + -1.3 273,977 + -0.9 273,977 + -1.4 273,977 + -1.2 273,977 + -0.6 273,977 + -0.9 273,977 + +1.3 273,977 + -0.6 273,977 + -0.0 273,978 - -1.1 273,978 - -0.6 273,978 - -2.4 273,978 - -1.1 273,978 - +0.8 273,978 - -2.1 273,978 - -0.0 273,978 - +0.6 273,978 - -0.4 273,978 - -0.4 273,978 - -1.3 273,978 - +1.2 273,978 - -0.0 273,978 - -1.7 273,978 - +0.7 273,978 - -2.3 273,978 - -0.6 273,978 - +1.7 273,978 - +1.5 273,978 - -0.0 273,978 - -0.4 273,978 - -1.5 273,978 - -0.3 273,978 - -0.6 274,014 - -0.2 274,136 + -0.7 274,136 + -0.7 274,136 + -1.2 274,136 + -0.9 274,136 + +1.3 274,361 + LRK53_RS01100 0.37 -2.0 274,361 + LRK53_RS01100 0.37 +0.4 274,361 + LRK53_RS01100 0.37 +0.7 274,361 + LRK53_RS01100 0.37 +1.1 274,361 + LRK53_RS01100 0.37 -0.7 274,361 + LRK53_RS01100 0.37 +0.9 274,361 + LRK53_RS01100 0.37 -1.0 274,361 + LRK53_RS01100 0.37 +0.8 274,361 + LRK53_RS01100 0.37 -1.0 274,361 + LRK53_RS01100 0.37 -0.7 274,361 + LRK53_RS01100 0.37 -0.8 274,362 - LRK53_RS01100 0.37 +0.2 274,362 - LRK53_RS01100 0.37 +0.0 274,362 - LRK53_RS01100 0.37 -0.8 274,362 - LRK53_RS01100 0.37 -0.2 274,362 - LRK53_RS01100 0.37 -1.3 274,362 - LRK53_RS01100 0.37 +0.3 274,362 - LRK53_RS01100 0.37 +0.2 274,362 - LRK53_RS01100 0.37 +0.3 274,362 - LRK53_RS01100 0.37 +1.3 274,394 + LRK53_RS01100 0.41 +1.4 274,394 + LRK53_RS01100 0.41 +1.6 274,394 + LRK53_RS01100 0.41 +0.3 274,395 - LRK53_RS01100 0.42 -1.6 274,395 - LRK53_RS01100 0.42 -0.0 274,580 + LRK53_RS01100 0.66 -1.3 274,580 + LRK53_RS01100 0.66 -0.2 274,581 - LRK53_RS01100 0.67 -0.4 274,581 - LRK53_RS01100 0.67 +1.0 274,591 + LRK53_RS01100 0.68 +0.4 274,591 + LRK53_RS01100 0.68 -1.1 274,591 + LRK53_RS01100 0.68 +0.5 274,591 + LRK53_RS01100 0.68 +0.1 274,591 + LRK53_RS01100 0.68 -1.1 274,592 - LRK53_RS01100 0.68 +0.2 274,592 - LRK53_RS01100 0.68 -0.5 274,592 - LRK53_RS01100 0.68 -0.2 274,592 - LRK53_RS01100 0.68 -0.4 274,592 - LRK53_RS01100 0.68 +0.6 274,592 - LRK53_RS01100 0.68 +1.5 274,719 - LRK53_RS01100 0.85 -0.6 274,719 - LRK53_RS01100 0.85 -0.0
Or see this region's nucleotide sequence