Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00910 and LRK53_RS00915 overlap by 1 nucleotides LRK53_RS00915 and LRK53_RS00920 overlap by 4 nucleotides
LRK53_RS00910: LRK53_RS00910 - monovalent cation/H+ antiporter subunit A, at 230,272 to 233,166
_RS00910
LRK53_RS00915: LRK53_RS00915 - Na+/H+ antiporter subunit C, at 233,166 to 233,507
_RS00915
LRK53_RS00920: LRK53_RS00920 - monovalent cation/H+ antiporter subunit D, at 233,504 to 235,099
_RS00920
Position (kb) 233
234 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 232.417 kb on + strand, within LRK53_RS00910 at 232.417 kb on + strand, within LRK53_RS00910 at 232.417 kb on + strand, within LRK53_RS00910 at 232.417 kb on + strand, within LRK53_RS00910 at 232.417 kb on + strand, within LRK53_RS00910 at 232.751 kb on + strand, within LRK53_RS00910 at 232.752 kb on - strand, within LRK53_RS00910 at 232.752 kb on - strand, within LRK53_RS00910 at 232.852 kb on + strand, within LRK53_RS00910 at 232.852 kb on + strand, within LRK53_RS00910 at 232.852 kb on + strand, within LRK53_RS00910 at 232.852 kb on + strand, within LRK53_RS00910 at 232.852 kb on + strand, within LRK53_RS00910 at 232.852 kb on + strand, within LRK53_RS00910 at 232.852 kb on + strand, within LRK53_RS00910 at 232.852 kb on + strand, within LRK53_RS00910 at 232.853 kb on - strand, within LRK53_RS00910 at 232.853 kb on - strand, within LRK53_RS00910 at 232.853 kb on - strand, within LRK53_RS00910 at 232.853 kb on - strand, within LRK53_RS00910 at 232.853 kb on - strand, within LRK53_RS00910 at 232.853 kb on - strand, within LRK53_RS00910 at 233.197 kb on + strand at 233.198 kb on - strand at 233.274 kb on + strand, within LRK53_RS00915 at 233.275 kb on - strand, within LRK53_RS00915 at 233.275 kb on - strand, within LRK53_RS00915 at 233.364 kb on + strand, within LRK53_RS00915 at 233.687 kb on + strand, within LRK53_RS00920 at 233.937 kb on - strand, within LRK53_RS00920 at 233.990 kb on + strand, within LRK53_RS00920 at 233.990 kb on + strand, within LRK53_RS00920 at 233.990 kb on + strand, within LRK53_RS00920 at 233.990 kb on + strand, within LRK53_RS00920 at 233.990 kb on + strand, within LRK53_RS00920 at 233.990 kb on + strand, within LRK53_RS00920 at 233.990 kb on + strand, within LRK53_RS00920 at 233.990 kb on + strand, within LRK53_RS00920 at 233.990 kb on + strand, within LRK53_RS00920 at 233.991 kb on - strand, within LRK53_RS00920 at 233.991 kb on - strand, within LRK53_RS00920 at 233.991 kb on - strand, within LRK53_RS00920 at 234.209 kb on + strand, within LRK53_RS00920 at 234.209 kb on + strand, within LRK53_RS00920 at 234.209 kb on + strand, within LRK53_RS00920 at 234.209 kb on + strand, within LRK53_RS00920 at 234.210 kb on - strand, within LRK53_RS00920 at 234.210 kb on - strand, within LRK53_RS00920 at 234.210 kb on - strand, within LRK53_RS00920 at 234.210 kb on - strand, within LRK53_RS00920 at 234.210 kb on - strand, within LRK53_RS00920 at 234.210 kb on - strand, within LRK53_RS00920 at 234.269 kb on + strand, within LRK53_RS00920 at 234.269 kb on + strand, within LRK53_RS00920 at 234.270 kb on - strand, within LRK53_RS00920
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 232,417 + LRK53_RS00910 0.74 -1.5 232,417 + LRK53_RS00910 0.74 -1.0 232,417 + LRK53_RS00910 0.74 +0.5 232,417 + LRK53_RS00910 0.74 -1.3 232,417 + LRK53_RS00910 0.74 -0.9 232,751 + LRK53_RS00910 0.86 +0.5 232,752 - LRK53_RS00910 0.86 +3.4 232,752 - LRK53_RS00910 0.86 -0.7 232,852 + LRK53_RS00910 0.89 -0.7 232,852 + LRK53_RS00910 0.89 +1.8 232,852 + LRK53_RS00910 0.89 -0.2 232,852 + LRK53_RS00910 0.89 +0.0 232,852 + LRK53_RS00910 0.89 -1.1 232,852 + LRK53_RS00910 0.89 -1.0 232,852 + LRK53_RS00910 0.89 -0.2 232,852 + LRK53_RS00910 0.89 -0.4 232,853 - LRK53_RS00910 0.89 -0.3 232,853 - LRK53_RS00910 0.89 -0.7 232,853 - LRK53_RS00910 0.89 +2.4 232,853 - LRK53_RS00910 0.89 +0.7 232,853 - LRK53_RS00910 0.89 -0.6 232,853 - LRK53_RS00910 0.89 -0.8 233,197 + -0.7 233,198 - -1.4 233,274 + LRK53_RS00915 0.32 +0.5 233,275 - LRK53_RS00915 0.32 -0.7 233,275 - LRK53_RS00915 0.32 +0.6 233,364 + LRK53_RS00915 0.58 -1.1 233,687 + LRK53_RS00920 0.11 +0.9 233,937 - LRK53_RS00920 0.27 -0.1 233,990 + LRK53_RS00920 0.30 +0.6 233,990 + LRK53_RS00920 0.30 +0.3 233,990 + LRK53_RS00920 0.30 -0.1 233,990 + LRK53_RS00920 0.30 -0.5 233,990 + LRK53_RS00920 0.30 -0.4 233,990 + LRK53_RS00920 0.30 +0.1 233,990 + LRK53_RS00920 0.30 -1.2 233,990 + LRK53_RS00920 0.30 +0.4 233,990 + LRK53_RS00920 0.30 -0.5 233,991 - LRK53_RS00920 0.31 -1.5 233,991 - LRK53_RS00920 0.31 -0.5 233,991 - LRK53_RS00920 0.31 -2.9 234,209 + LRK53_RS00920 0.44 -0.7 234,209 + LRK53_RS00920 0.44 -0.1 234,209 + LRK53_RS00920 0.44 -0.1 234,209 + LRK53_RS00920 0.44 -0.1 234,210 - LRK53_RS00920 0.44 +0.6 234,210 - LRK53_RS00920 0.44 -1.0 234,210 - LRK53_RS00920 0.44 -1.3 234,210 - LRK53_RS00920 0.44 -0.7 234,210 - LRK53_RS00920 0.44 +1.9 234,210 - LRK53_RS00920 0.44 -0.9 234,269 + LRK53_RS00920 0.48 -1.5 234,269 + LRK53_RS00920 0.48 -2.1 234,270 - LRK53_RS00920 0.48 +0.9
Or see this region's nucleotide sequence