Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00720

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS00715 and LRK53_RS00720 are separated by 169 nucleotidesLRK53_RS00720 and LRK53_RS00725 are separated by 75 nucleotides LRK53_RS00715: LRK53_RS00715 - insulinase family protein, at 168,061 to 169,536 _RS00715 LRK53_RS00720: LRK53_RS00720 - acyloxyacyl hydrolase, at 169,706 to 170,227 _RS00720 LRK53_RS00725: LRK53_RS00725 - DHA2 family efflux MFS transporter permease subunit, at 170,303 to 171,829 _RS00725 Position (kb) 169 170 171Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 168.961 kb on + strand, within LRK53_RS00715at 168.961 kb on + strand, within LRK53_RS00715at 168.961 kb on + strand, within LRK53_RS00715at 168.962 kb on - strand, within LRK53_RS00715at 168.962 kb on - strand, within LRK53_RS00715at 168.962 kb on - strand, within LRK53_RS00715at 168.964 kb on + strand, within LRK53_RS00715at 168.964 kb on + strand, within LRK53_RS00715at 168.964 kb on + strand, within LRK53_RS00715at 168.964 kb on + strand, within LRK53_RS00715at 168.964 kb on + strand, within LRK53_RS00715at 168.964 kb on + strand, within LRK53_RS00715at 168.964 kb on + strand, within LRK53_RS00715at 168.964 kb on + strand, within LRK53_RS00715at 168.964 kb on + strand, within LRK53_RS00715at 168.964 kb on + strand, within LRK53_RS00715at 168.964 kb on + strand, within LRK53_RS00715at 168.964 kb on + strand, within LRK53_RS00715at 168.964 kb on + strand, within LRK53_RS00715at 168.964 kb on + strand, within LRK53_RS00715at 168.965 kb on - strand, within LRK53_RS00715at 168.965 kb on - strand, within LRK53_RS00715at 169.003 kb on + strand, within LRK53_RS00715at 169.003 kb on + strand, within LRK53_RS00715at 169.004 kb on - strand, within LRK53_RS00715at 169.052 kb on - strand, within LRK53_RS00715at 169.234 kb on + strand, within LRK53_RS00715at 169.294 kb on + strand, within LRK53_RS00715at 169.294 kb on + strand, within LRK53_RS00715at 169.295 kb on - strand, within LRK53_RS00715at 169.295 kb on - strand, within LRK53_RS00715at 169.295 kb on - strand, within LRK53_RS00715at 169.295 kb on - strand, within LRK53_RS00715at 169.324 kb on + strand, within LRK53_RS00715at 169.324 kb on + strand, within LRK53_RS00715at 169.324 kb on + strand, within LRK53_RS00715at 169.324 kb on + strand, within LRK53_RS00715at 169.324 kb on + strand, within LRK53_RS00715at 169.324 kb on + strand, within LRK53_RS00715at 169.324 kb on + strand, within LRK53_RS00715at 169.324 kb on + strand, within LRK53_RS00715at 169.324 kb on + strand, within LRK53_RS00715at 169.324 kb on + strand, within LRK53_RS00715at 169.324 kb on + strand, within LRK53_RS00715at 169.324 kb on + strand, within LRK53_RS00715at 169.324 kb on + strand, within LRK53_RS00715at 169.325 kb on - strand, within LRK53_RS00715at 169.325 kb on - strand, within LRK53_RS00715at 169.325 kb on - strand, within LRK53_RS00715at 169.325 kb on - strand, within LRK53_RS00715at 169.325 kb on - strand, within LRK53_RS00715at 169.325 kb on - strand, within LRK53_RS00715at 169.325 kb on - strand, within LRK53_RS00715at 169.325 kb on - strand, within LRK53_RS00715at 169.369 kb on + strand, within LRK53_RS00715at 169.369 kb on + strand, within LRK53_RS00715at 169.369 kb on + strand, within LRK53_RS00715at 169.369 kb on + strand, within LRK53_RS00715at 169.369 kb on + strand, within LRK53_RS00715at 169.370 kb on - strand, within LRK53_RS00715at 169.370 kb on - strand, within LRK53_RS00715at 169.370 kb on - strand, within LRK53_RS00715at 169.370 kb on - strand, within LRK53_RS00715at 169.534 kb on + strandat 169.534 kb on + strandat 169.534 kb on + strandat 169.535 kb on - strandat 169.655 kb on + strandat 169.658 kb on + strandat 169.658 kb on + strandat 169.658 kb on + strandat 169.658 kb on + strandat 169.659 kb on - strandat 169.659 kb on - strandat 169.659 kb on - strandat 169.670 kb on + strandat 169.817 kb on - strand, within LRK53_RS00720at 169.817 kb on - strand, within LRK53_RS00720at 169.817 kb on - strand, within LRK53_RS00720at 169.952 kb on + strand, within LRK53_RS00720at 169.952 kb on + strand, within LRK53_RS00720at 170.024 kb on + strand, within LRK53_RS00720at 170.025 kb on - strand, within LRK53_RS00720at 170.025 kb on - strand, within LRK53_RS00720at 170.093 kb on + strand, within LRK53_RS00720at 170.094 kb on - strand, within LRK53_RS00720at 170.428 kb on - strandat 170.428 kb on - strandat 170.428 kb on - strandat 170.428 kb on - strandat 170.428 kb on - strandat 170.523 kb on + strand, within LRK53_RS00725at 170.524 kb on - strand, within LRK53_RS00725at 170.524 kb on - strand, within LRK53_RS00725at 170.524 kb on - strand, within LRK53_RS00725at 170.524 kb on - strand, within LRK53_RS00725at 170.754 kb on + strand, within LRK53_RS00725at 170.754 kb on + strand, within LRK53_RS00725at 170.754 kb on + strand, within LRK53_RS00725at 170.754 kb on + strand, within LRK53_RS00725at 170.754 kb on + strand, within LRK53_RS00725at 170.754 kb on + strand, within LRK53_RS00725at 170.754 kb on + strand, within LRK53_RS00725at 170.754 kb on + strand, within LRK53_RS00725at 170.755 kb on - strand, within LRK53_RS00725at 170.755 kb on - strand, within LRK53_RS00725at 170.755 kb on - strand, within LRK53_RS00725at 170.755 kb on - strand, within LRK53_RS00725at 170.755 kb on - strand, within LRK53_RS00725at 170.755 kb on - strand, within LRK53_RS00725at 170.755 kb on - strand, within LRK53_RS00725at 170.755 kb on - strand, within LRK53_RS00725at 170.755 kb on - strand, within LRK53_RS00725at 170.856 kb on + strand, within LRK53_RS00725at 170.856 kb on + strand, within LRK53_RS00725at 170.856 kb on + strand, within LRK53_RS00725at 170.856 kb on + strand, within LRK53_RS00725at 170.856 kb on + strand, within LRK53_RS00725at 170.856 kb on + strand, within LRK53_RS00725at 170.856 kb on + strand, within LRK53_RS00725at 170.856 kb on + strand, within LRK53_RS00725at 170.856 kb on + strand, within LRK53_RS00725at 170.857 kb on - strand, within LRK53_RS00725at 170.857 kb on - strand, within LRK53_RS00725at 170.857 kb on - strand, within LRK53_RS00725at 170.857 kb on - strand, within LRK53_RS00725at 170.857 kb on - strand, within LRK53_RS00725at 170.857 kb on - strand, within LRK53_RS00725at 170.857 kb on - strand, within LRK53_RS00725at 170.857 kb on - strand, within LRK53_RS00725at 170.857 kb on - strand, within LRK53_RS00725at 170.857 kb on - strand, within LRK53_RS00725at 170.857 kb on - strand, within LRK53_RS00725at 170.934 kb on + strand, within LRK53_RS00725at 170.934 kb on + strand, within LRK53_RS00725at 170.934 kb on + strand, within LRK53_RS00725at 170.934 kb on + strand, within LRK53_RS00725at 170.935 kb on - strand, within LRK53_RS00725at 170.935 kb on - strand, within LRK53_RS00725at 170.994 kb on + strand, within LRK53_RS00725at 170.994 kb on + strand, within LRK53_RS00725at 170.994 kb on + strand, within LRK53_RS00725at 170.995 kb on - strand, within LRK53_RS00725at 170.995 kb on - strand, within LRK53_RS00725

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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168,961 + LRK53_RS00715 0.61 +1.6
168,961 + LRK53_RS00715 0.61 -1.4
168,961 + LRK53_RS00715 0.61 +0.2
168,962 - LRK53_RS00715 0.61 +0.3
168,962 - LRK53_RS00715 0.61 -3.2
168,962 - LRK53_RS00715 0.61 -0.8
168,964 + LRK53_RS00715 0.61 -1.7
168,964 + LRK53_RS00715 0.61 -0.0
168,964 + LRK53_RS00715 0.61 +1.0
168,964 + LRK53_RS00715 0.61 +1.4
168,964 + LRK53_RS00715 0.61 +0.2
168,964 + LRK53_RS00715 0.61 +0.6
168,964 + LRK53_RS00715 0.61 -1.2
168,964 + LRK53_RS00715 0.61 +0.4
168,964 + LRK53_RS00715 0.61 +1.0
168,964 + LRK53_RS00715 0.61 -1.5
168,964 + LRK53_RS00715 0.61 +1.5
168,964 + LRK53_RS00715 0.61 -2.1
168,964 + LRK53_RS00715 0.61 -1.6
168,964 + LRK53_RS00715 0.61 +0.5
168,965 - LRK53_RS00715 0.61 -1.0
168,965 - LRK53_RS00715 0.61 -1.0
169,003 + LRK53_RS00715 0.64 -1.4
169,003 + LRK53_RS00715 0.64 -1.7
169,004 - LRK53_RS00715 0.64 +0.5
169,052 - LRK53_RS00715 0.67 -0.2
169,234 + LRK53_RS00715 0.79 +0.8
169,294 + LRK53_RS00715 0.84 -1.0
169,294 + LRK53_RS00715 0.84 -2.6
169,295 - LRK53_RS00715 0.84 -2.7
169,295 - LRK53_RS00715 0.84 -1.1
169,295 - LRK53_RS00715 0.84 +0.1
169,295 - LRK53_RS00715 0.84 +0.1
169,324 + LRK53_RS00715 0.86 -0.7
169,324 + LRK53_RS00715 0.86 -1.8
169,324 + LRK53_RS00715 0.86 -0.0
169,324 + LRK53_RS00715 0.86 +1.4
169,324 + LRK53_RS00715 0.86 -0.8
169,324 + LRK53_RS00715 0.86 -2.1
169,324 + LRK53_RS00715 0.86 -0.3
169,324 + LRK53_RS00715 0.86 -1.4
169,324 + LRK53_RS00715 0.86 +0.5
169,324 + LRK53_RS00715 0.86 +0.3
169,324 + LRK53_RS00715 0.86 -1.0
169,324 + LRK53_RS00715 0.86 -0.6
169,324 + LRK53_RS00715 0.86 -1.0
169,325 - LRK53_RS00715 0.86 -1.7
169,325 - LRK53_RS00715 0.86 -1.0
169,325 - LRK53_RS00715 0.86 -0.0
169,325 - LRK53_RS00715 0.86 +1.1
169,325 - LRK53_RS00715 0.86 -0.5
169,325 - LRK53_RS00715 0.86 -0.0
169,325 - LRK53_RS00715 0.86 -2.5
169,325 - LRK53_RS00715 0.86 -1.5
169,369 + LRK53_RS00715 0.89 -2.7
169,369 + LRK53_RS00715 0.89 +0.2
169,369 + LRK53_RS00715 0.89 -0.3
169,369 + LRK53_RS00715 0.89 -0.8
169,369 + LRK53_RS00715 0.89 -0.2
169,370 - LRK53_RS00715 0.89 +0.6
169,370 - LRK53_RS00715 0.89 +2.1
169,370 - LRK53_RS00715 0.89 +0.2
169,370 - LRK53_RS00715 0.89 -0.4
169,534 + -1.8
169,534 + +0.8
169,534 + -0.1
169,535 - -0.5
169,655 + -0.5
169,658 + -0.1
169,658 + -0.9
169,658 + +0.1
169,658 + -2.3
169,659 - -1.0
169,659 - -1.3
169,659 - -2.0
169,670 + -1.1
169,817 - LRK53_RS00720 0.21 -2.5
169,817 - LRK53_RS00720 0.21 -1.8
169,817 - LRK53_RS00720 0.21 +1.6
169,952 + LRK53_RS00720 0.47 +0.8
169,952 + LRK53_RS00720 0.47 +0.9
170,024 + LRK53_RS00720 0.61 -0.0
170,025 - LRK53_RS00720 0.61 +0.0
170,025 - LRK53_RS00720 0.61 -1.0
170,093 + LRK53_RS00720 0.74 -0.5
170,094 - LRK53_RS00720 0.74 -0.2
170,428 - -1.4
170,428 - -1.3
170,428 - -1.6
170,428 - +0.5
170,428 - -0.4
170,523 + LRK53_RS00725 0.14 +1.1
170,524 - LRK53_RS00725 0.14 -0.6
170,524 - LRK53_RS00725 0.14 -0.0
170,524 - LRK53_RS00725 0.14 +1.8
170,524 - LRK53_RS00725 0.14 -0.7
170,754 + LRK53_RS00725 0.30 +0.3
170,754 + LRK53_RS00725 0.30 +1.6
170,754 + LRK53_RS00725 0.30 -2.7
170,754 + LRK53_RS00725 0.30 +1.5
170,754 + LRK53_RS00725 0.30 +1.6
170,754 + LRK53_RS00725 0.30 +2.4
170,754 + LRK53_RS00725 0.30 +0.6
170,754 + LRK53_RS00725 0.30 -0.3
170,755 - LRK53_RS00725 0.30 -0.4
170,755 - LRK53_RS00725 0.30 +0.1
170,755 - LRK53_RS00725 0.30 -0.1
170,755 - LRK53_RS00725 0.30 -0.3
170,755 - LRK53_RS00725 0.30 -2.4
170,755 - LRK53_RS00725 0.30 -0.5
170,755 - LRK53_RS00725 0.30 -1.2
170,755 - LRK53_RS00725 0.30 -1.4
170,755 - LRK53_RS00725 0.30 +1.0
170,856 + LRK53_RS00725 0.36 -1.3
170,856 + LRK53_RS00725 0.36 -0.8
170,856 + LRK53_RS00725 0.36 -1.6
170,856 + LRK53_RS00725 0.36 -0.8
170,856 + LRK53_RS00725 0.36 +0.8
170,856 + LRK53_RS00725 0.36 +0.7
170,856 + LRK53_RS00725 0.36 -0.8
170,856 + LRK53_RS00725 0.36 +0.7
170,856 + LRK53_RS00725 0.36 +0.0
170,857 - LRK53_RS00725 0.36 +1.2
170,857 - LRK53_RS00725 0.36 -1.4
170,857 - LRK53_RS00725 0.36 -0.7
170,857 - LRK53_RS00725 0.36 +0.8
170,857 - LRK53_RS00725 0.36 -0.2
170,857 - LRK53_RS00725 0.36 +1.0
170,857 - LRK53_RS00725 0.36 -1.0
170,857 - LRK53_RS00725 0.36 +1.3
170,857 - LRK53_RS00725 0.36 +2.4
170,857 - LRK53_RS00725 0.36 +0.5
170,857 - LRK53_RS00725 0.36 +0.5
170,934 + LRK53_RS00725 0.41 +1.1
170,934 + LRK53_RS00725 0.41 -2.6
170,934 + LRK53_RS00725 0.41 +0.5
170,934 + LRK53_RS00725 0.41 +0.3
170,935 - LRK53_RS00725 0.41 -0.8
170,935 - LRK53_RS00725 0.41 +2.1
170,994 + LRK53_RS00725 0.45 +0.3
170,994 + LRK53_RS00725 0.45 +1.9
170,994 + LRK53_RS00725 0.45 -1.4
170,995 - LRK53_RS00725 0.45 -0.8
170,995 - LRK53_RS00725 0.45 -0.9

Or see this region's nucleotide sequence