Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00560

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS00550 and LRK53_RS00555 are separated by 155 nucleotidesLRK53_RS00555 and LRK53_RS00560 are separated by 170 nucleotidesLRK53_RS00560 and LRK53_RS00565 are separated by 43 nucleotides LRK53_RS00550: LRK53_RS00550 - serine kinase, at 121,567 to 122,589 _RS00550 LRK53_RS00555: LRK53_RS00555 - peroxiredoxin, at 122,745 to 123,353 _RS00555 LRK53_RS00560: LRK53_RS00560 - ABC transporter ATP-binding protein/permease, at 123,524 to 125,290 _RS00560 LRK53_RS00565: LRK53_RS00565 - ATP-binding protein, at 125,334 to 126,344 _RS00565 Position (kb) 123 124 125 126Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 122.615 kb on - strandat 122.650 kb on + strandat 122.650 kb on + strandat 122.650 kb on + strandat 122.650 kb on + strandat 122.650 kb on + strandat 122.650 kb on + strandat 122.650 kb on + strandat 122.650 kb on + strandat 122.651 kb on - strandat 122.651 kb on - strandat 122.651 kb on - strandat 122.651 kb on - strandat 122.651 kb on - strandat 122.651 kb on - strandat 122.928 kb on + strand, within LRK53_RS00555at 122.928 kb on + strand, within LRK53_RS00555at 122.928 kb on + strand, within LRK53_RS00555at 122.928 kb on + strand, within LRK53_RS00555at 122.928 kb on + strand, within LRK53_RS00555at 122.928 kb on + strand, within LRK53_RS00555at 122.928 kb on + strand, within LRK53_RS00555at 122.928 kb on + strand, within LRK53_RS00555at 122.928 kb on + strand, within LRK53_RS00555at 122.928 kb on + strand, within LRK53_RS00555at 122.928 kb on + strand, within LRK53_RS00555at 122.928 kb on + strand, within LRK53_RS00555at 122.928 kb on + strand, within LRK53_RS00555at 122.928 kb on + strand, within LRK53_RS00555at 122.928 kb on + strand, within LRK53_RS00555at 122.928 kb on + strand, within LRK53_RS00555at 122.928 kb on + strand, within LRK53_RS00555at 122.928 kb on + strand, within LRK53_RS00555at 122.928 kb on + strand, within LRK53_RS00555at 122.928 kb on + strand, within LRK53_RS00555at 122.928 kb on + strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.929 kb on - strand, within LRK53_RS00555at 122.934 kb on + strand, within LRK53_RS00555at 123.081 kb on + strand, within LRK53_RS00555at 123.081 kb on + strand, within LRK53_RS00555at 123.081 kb on + strand, within LRK53_RS00555at 123.081 kb on + strand, within LRK53_RS00555at 123.081 kb on + strand, within LRK53_RS00555at 123.138 kb on + strand, within LRK53_RS00555at 123.138 kb on + strand, within LRK53_RS00555at 123.139 kb on - strand, within LRK53_RS00555at 123.139 kb on - strand, within LRK53_RS00555at 123.139 kb on - strand, within LRK53_RS00555at 123.139 kb on - strand, within LRK53_RS00555at 123.139 kb on - strand, within LRK53_RS00555at 123.626 kb on + strandat 123.626 kb on + strandat 123.627 kb on - strandat 123.627 kb on - strandat 123.627 kb on - strandat 123.627 kb on - strandat 123.627 kb on - strandat 123.627 kb on - strandat 123.627 kb on - strandat 123.961 kb on + strand, within LRK53_RS00560at 123.962 kb on - strand, within LRK53_RS00560at 123.962 kb on - strand, within LRK53_RS00560at 123.962 kb on - strand, within LRK53_RS00560at 124.109 kb on + strand, within LRK53_RS00560at 124.142 kb on + strand, within LRK53_RS00560at 124.142 kb on + strand, within LRK53_RS00560at 124.142 kb on + strand, within LRK53_RS00560at 124.142 kb on + strand, within LRK53_RS00560at 124.143 kb on - strand, within LRK53_RS00560at 124.143 kb on - strand, within LRK53_RS00560at 124.143 kb on - strand, within LRK53_RS00560at 124.244 kb on + strand, within LRK53_RS00560at 124.244 kb on + strand, within LRK53_RS00560at 124.244 kb on + strand, within LRK53_RS00560at 124.244 kb on + strand, within LRK53_RS00560at 124.244 kb on + strand, within LRK53_RS00560at 124.244 kb on + strand, within LRK53_RS00560at 124.245 kb on - strand, within LRK53_RS00560at 124.245 kb on - strand, within LRK53_RS00560at 124.245 kb on - strand, within LRK53_RS00560at 124.245 kb on - strand, within LRK53_RS00560at 124.245 kb on - strand, within LRK53_RS00560at 124.245 kb on - strand, within LRK53_RS00560at 124.436 kb on + strand, within LRK53_RS00560at 124.437 kb on - strand, within LRK53_RS00560at 124.437 kb on - strand, within LRK53_RS00560at 124.437 kb on - strand, within LRK53_RS00560at 124.437 kb on - strand, within LRK53_RS00560at 124.508 kb on + strand, within LRK53_RS00560at 124.508 kb on + strand, within LRK53_RS00560at 124.508 kb on + strand, within LRK53_RS00560at 124.508 kb on + strand, within LRK53_RS00560at 124.508 kb on + strand, within LRK53_RS00560at 124.508 kb on + strand, within LRK53_RS00560at 124.508 kb on + strand, within LRK53_RS00560at 124.508 kb on + strand, within LRK53_RS00560at 124.508 kb on + strand, within LRK53_RS00560at 124.509 kb on - strand, within LRK53_RS00560at 124.509 kb on - strand, within LRK53_RS00560at 124.509 kb on - strand, within LRK53_RS00560at 124.509 kb on - strand, within LRK53_RS00560at 124.509 kb on - strand, within LRK53_RS00560at 124.509 kb on - strand, within LRK53_RS00560at 124.509 kb on - strand, within LRK53_RS00560at 124.529 kb on + strand, within LRK53_RS00560at 124.529 kb on + strand, within LRK53_RS00560at 124.529 kb on + strand, within LRK53_RS00560at 124.529 kb on + strand, within LRK53_RS00560at 124.529 kb on + strand, within LRK53_RS00560at 124.529 kb on + strand, within LRK53_RS00560at 124.529 kb on + strand, within LRK53_RS00560at 124.529 kb on + strand, within LRK53_RS00560at 124.529 kb on + strand, within LRK53_RS00560at 124.530 kb on - strand, within LRK53_RS00560at 124.530 kb on - strand, within LRK53_RS00560at 124.530 kb on - strand, within LRK53_RS00560at 124.530 kb on - strand, within LRK53_RS00560at 124.530 kb on - strand, within LRK53_RS00560at 124.530 kb on - strand, within LRK53_RS00560at 124.530 kb on - strand, within LRK53_RS00560at 124.530 kb on - strand, within LRK53_RS00560at 124.530 kb on - strand, within LRK53_RS00560at 124.530 kb on - strand, within LRK53_RS00560at 124.530 kb on - strand, within LRK53_RS00560at 124.802 kb on + strand, within LRK53_RS00560at 124.803 kb on - strand, within LRK53_RS00560at 124.803 kb on - strand, within LRK53_RS00560at 124.803 kb on - strand, within LRK53_RS00560at 125.964 kb on + strand, within LRK53_RS00565at 125.964 kb on + strand, within LRK53_RS00565at 125.965 kb on - strand, within LRK53_RS00565at 125.965 kb on - strand, within LRK53_RS00565at 125.965 kb on - strand, within LRK53_RS00565at 125.965 kb on - strand, within LRK53_RS00565at 125.965 kb on - strand, within LRK53_RS00565at 125.965 kb on - strand, within LRK53_RS00565at 125.965 kb on - strand, within LRK53_RS00565

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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122,615 - -1.2
122,650 + -0.4
122,650 + +0.9
122,650 + +1.2
122,650 + +1.0
122,650 + -0.7
122,650 + -0.2
122,650 + -0.2
122,650 + -0.0
122,651 - +0.3
122,651 - -0.1
122,651 - +1.1
122,651 - -0.9
122,651 - -0.7
122,651 - -0.2
122,928 + LRK53_RS00555 0.30 -1.1
122,928 + LRK53_RS00555 0.30 -0.8
122,928 + LRK53_RS00555 0.30 +1.8
122,928 + LRK53_RS00555 0.30 -0.0
122,928 + LRK53_RS00555 0.30 +2.2
122,928 + LRK53_RS00555 0.30 -0.4
122,928 + LRK53_RS00555 0.30 +0.4
122,928 + LRK53_RS00555 0.30 -0.5
122,928 + LRK53_RS00555 0.30 -1.2
122,928 + LRK53_RS00555 0.30 -1.3
122,928 + LRK53_RS00555 0.30 +0.3
122,928 + LRK53_RS00555 0.30 +0.7
122,928 + LRK53_RS00555 0.30 +2.5
122,928 + LRK53_RS00555 0.30 -0.8
122,928 + LRK53_RS00555 0.30 -1.0
122,928 + LRK53_RS00555 0.30 -0.6
122,928 + LRK53_RS00555 0.30 -1.2
122,928 + LRK53_RS00555 0.30 -1.2
122,928 + LRK53_RS00555 0.30 +0.7
122,928 + LRK53_RS00555 0.30 +0.2
122,928 + LRK53_RS00555 0.30 -1.7
122,929 - LRK53_RS00555 0.30 -0.1
122,929 - LRK53_RS00555 0.30 -0.5
122,929 - LRK53_RS00555 0.30 +1.1
122,929 - LRK53_RS00555 0.30 -0.2
122,929 - LRK53_RS00555 0.30 -0.5
122,929 - LRK53_RS00555 0.30 -0.1
122,929 - LRK53_RS00555 0.30 -1.7
122,929 - LRK53_RS00555 0.30 +1.2
122,929 - LRK53_RS00555 0.30 +0.7
122,929 - LRK53_RS00555 0.30 -1.5
122,929 - LRK53_RS00555 0.30 -1.0
122,929 - LRK53_RS00555 0.30 -1.2
122,929 - LRK53_RS00555 0.30 +1.8
122,929 - LRK53_RS00555 0.30 -0.2
122,929 - LRK53_RS00555 0.30 -1.3
122,929 - LRK53_RS00555 0.30 -1.9
122,929 - LRK53_RS00555 0.30 +0.1
122,929 - LRK53_RS00555 0.30 -0.7
122,929 - LRK53_RS00555 0.30 +0.5
122,929 - LRK53_RS00555 0.30 -0.5
122,929 - LRK53_RS00555 0.30 +0.0
122,929 - LRK53_RS00555 0.30 -1.2
122,929 - LRK53_RS00555 0.30 -2.6
122,929 - LRK53_RS00555 0.30 +0.1
122,929 - LRK53_RS00555 0.30 -0.3
122,929 - LRK53_RS00555 0.30 -1.7
122,929 - LRK53_RS00555 0.30 +0.8
122,929 - LRK53_RS00555 0.30 -0.1
122,929 - LRK53_RS00555 0.30 -1.0
122,934 + LRK53_RS00555 0.31 -0.7
123,081 + LRK53_RS00555 0.55 -0.4
123,081 + LRK53_RS00555 0.55 +0.2
123,081 + LRK53_RS00555 0.55 +1.1
123,081 + LRK53_RS00555 0.55 -0.0
123,081 + LRK53_RS00555 0.55 -0.0
123,138 + LRK53_RS00555 0.65 -0.3
123,138 + LRK53_RS00555 0.65 -2.0
123,139 - LRK53_RS00555 0.65 -2.2
123,139 - LRK53_RS00555 0.65 -0.7
123,139 - LRK53_RS00555 0.65 -2.0
123,139 - LRK53_RS00555 0.65 +1.1
123,139 - LRK53_RS00555 0.65 -1.0
123,626 + +0.1
123,626 + +1.3
123,627 - -0.7
123,627 - +1.4
123,627 - +0.2
123,627 - +0.5
123,627 - -0.2
123,627 - -1.5
123,627 - +0.6
123,961 + LRK53_RS00560 0.25 +0.2
123,962 - LRK53_RS00560 0.25 +0.2
123,962 - LRK53_RS00560 0.25 -1.0
123,962 - LRK53_RS00560 0.25 -1.1
124,109 + LRK53_RS00560 0.33 +0.2
124,142 + LRK53_RS00560 0.35 +0.2
124,142 + LRK53_RS00560 0.35 +0.7
124,142 + LRK53_RS00560 0.35 -0.0
124,142 + LRK53_RS00560 0.35 -0.7
124,143 - LRK53_RS00560 0.35 -0.5
124,143 - LRK53_RS00560 0.35 -0.2
124,143 - LRK53_RS00560 0.35 -2.4
124,244 + LRK53_RS00560 0.41 -0.2
124,244 + LRK53_RS00560 0.41 -1.5
124,244 + LRK53_RS00560 0.41 +0.5
124,244 + LRK53_RS00560 0.41 -0.9
124,244 + LRK53_RS00560 0.41 -1.3
124,244 + LRK53_RS00560 0.41 -0.5
124,245 - LRK53_RS00560 0.41 -0.2
124,245 - LRK53_RS00560 0.41 -1.1
124,245 - LRK53_RS00560 0.41 +1.6
124,245 - LRK53_RS00560 0.41 -1.1
124,245 - LRK53_RS00560 0.41 -0.8
124,245 - LRK53_RS00560 0.41 +0.5
124,436 + LRK53_RS00560 0.52 -0.0
124,437 - LRK53_RS00560 0.52 -1.5
124,437 - LRK53_RS00560 0.52 -1.1
124,437 - LRK53_RS00560 0.52 -1.0
124,437 - LRK53_RS00560 0.52 -0.5
124,508 + LRK53_RS00560 0.56 -0.0
124,508 + LRK53_RS00560 0.56 -1.1
124,508 + LRK53_RS00560 0.56 +1.4
124,508 + LRK53_RS00560 0.56 -0.0
124,508 + LRK53_RS00560 0.56 -0.9
124,508 + LRK53_RS00560 0.56 -1.2
124,508 + LRK53_RS00560 0.56 -2.1
124,508 + LRK53_RS00560 0.56 -3.0
124,508 + LRK53_RS00560 0.56 -0.4
124,509 - LRK53_RS00560 0.56 -0.0
124,509 - LRK53_RS00560 0.56 -1.0
124,509 - LRK53_RS00560 0.56 -0.3
124,509 - LRK53_RS00560 0.56 +0.5
124,509 - LRK53_RS00560 0.56 +0.9
124,509 - LRK53_RS00560 0.56 -1.4
124,509 - LRK53_RS00560 0.56 -0.2
124,529 + LRK53_RS00560 0.57 +0.7
124,529 + LRK53_RS00560 0.57 -0.7
124,529 + LRK53_RS00560 0.57 -2.7
124,529 + LRK53_RS00560 0.57 +2.0
124,529 + LRK53_RS00560 0.57 -1.2
124,529 + LRK53_RS00560 0.57 +0.8
124,529 + LRK53_RS00560 0.57 -0.0
124,529 + LRK53_RS00560 0.57 -0.2
124,529 + LRK53_RS00560 0.57 -0.9
124,530 - LRK53_RS00560 0.57 -0.4
124,530 - LRK53_RS00560 0.57 +0.5
124,530 - LRK53_RS00560 0.57 -0.9
124,530 - LRK53_RS00560 0.57 -1.0
124,530 - LRK53_RS00560 0.57 +0.5
124,530 - LRK53_RS00560 0.57 -0.3
124,530 - LRK53_RS00560 0.57 -0.0
124,530 - LRK53_RS00560 0.57 +0.8
124,530 - LRK53_RS00560 0.57 -0.5
124,530 - LRK53_RS00560 0.57 -1.9
124,530 - LRK53_RS00560 0.57 +0.2
124,802 + LRK53_RS00560 0.72 +0.8
124,803 - LRK53_RS00560 0.72 -0.2
124,803 - LRK53_RS00560 0.72 +1.4
124,803 - LRK53_RS00560 0.72 -1.4
125,964 + LRK53_RS00565 0.62 -0.2
125,964 + LRK53_RS00565 0.62 -0.1
125,965 - LRK53_RS00565 0.62 -0.0
125,965 - LRK53_RS00565 0.62 -0.1
125,965 - LRK53_RS00565 0.62 +1.2
125,965 - LRK53_RS00565 0.62 -1.9
125,965 - LRK53_RS00565 0.62 -0.4
125,965 - LRK53_RS00565 0.62 -1.5
125,965 - LRK53_RS00565 0.62 -0.2

Or see this region's nucleotide sequence